JAVA PROFILE 1.0.1, created Thu Feb 11 11:35:13 2010 Header for -agentlib:hprof (or -Xrunhprof) ASCII Output (JDK 5.0 JVMTI based) @(#)jvm.hprof.txt 1.5 06/01/28 Copyright (c) 2006 Sun Microsystems, Inc. All Rights Reserved. WARNING! This file format is under development, and is subject to change without notice. This file contains the following types of records: THREAD START THREAD END mark the lifetime of Java threads TRACE represents a Java stack trace. Each trace consists of a series of stack frames. Other records refer to TRACEs to identify (1) where object allocations have taken place, (2) the frames in which GC roots were found, and (3) frequently executed methods. HEAP DUMP is a complete snapshot of all live objects in the Java heap. Following distinctions are made: ROOT root set as determined by GC CLS classes OBJ instances ARR arrays SITES is a sorted list of allocation sites. This identifies the most heavily allocated object types, and the TRACE at which those allocations occurred. CPU SAMPLES is a statistical profile of program execution. The VM periodically samples all running threads, and assigns a quantum to active TRACEs in those threads. Entries in this record are TRACEs ranked by the percentage of total quanta they consumed; top-ranked TRACEs are typically hot spots in the program. CPU TIME is a profile of program execution obtained by measuring the time spent in individual methods (excluding the time spent in callees), as well as by counting the number of times each method is called. Entries in this record are TRACEs ranked by the percentage of total CPU time. The "count" field indicates the number of times each TRACE is invoked. MONITOR TIME is a profile of monitor contention obtained by measuring the time spent by a thread waiting to enter a monitor. Entries in this record are TRACEs ranked by the percentage of total monitor contention time and a brief description of the monitor. The "count" field indicates the number of times the monitor was contended at that TRACE. MONITOR DUMP is a complete snapshot of all the monitors and threads in the System. HEAP DUMP, SITES, CPU SAMPLES|TIME and MONITOR DUMP|TIME records are generated at program exit. They can also be obtained during program execution by typing Ctrl-\ (on Solaris) or by typing Ctrl-Break (on Win32). -------- THREAD START (obj=50000133, id = 200001, name="main", group="main") THREAD START (obj=50000133, id = 200006, name="Java2D Disposer", group="system") THREAD START (obj=50000133, id = 200007, name="AWT-Shutdown", group="main") THREAD START (obj=50000133, id = 200008, name="AWT-Windows", group="main") THREAD START (obj=50000133, id = 200009, name="Image Fetcher 0", group="main") THREAD START (obj=5000074b, id = 200010, name="AWT-EventQueue-0", group="main") THREAD START (obj=50000133, id = 200011, name="D3D Screen Updater", group="system") THREAD START (obj=50000af5, id = 200012, name="HSQLDB Server @51cfc277", group="main") THREAD END (id = 200009) THREAD START (obj=50000133, id = 200013, name="HSQLDB Timer @775978e7", group="main") THREAD START (obj=50000133, id = 200014, name="HSQLDB Connection @4863cc1", group="HSQLDB Connections @51cfc277") THREAD END (id = 200014) THREAD START (obj=50000133, id = 200015, name="pool-1-thread-1", group="main") THREAD START (obj=50000133, id = 200016, name="HSQLDB Connection @63654886", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200017, name="HSQLDB Connection @626664fc", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200018, name="HSQLDB Connection @66c0c6f6", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200019, name="HSQLDB Connection @26473f4c", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000af5, id = 200020, name="HSQLDB Server @d5c4ee6", group="main") THREAD START (obj=50000133, id = 200021, name="HSQLDB Connection @38d5b111", group="HSQLDB Connections @d5c4ee6") THREAD START (obj=50000133, id = 200022, name="Image Fetcher 0", group="main") THREAD START (obj=50000133, id = 200023, name="Image Fetcher 1", group="main") THREAD START (obj=50000af5, id = 200024, name="HSQLDB Server @59229fdf", group="main") THREAD END (id = 200022) THREAD END (id = 200023) THREAD START (obj=50000133, id = 200025, name="HSQLDB Connection @1700ffdb", group="HSQLDB Connections @59229fdf") THREAD START (obj=50000133, id = 200026, name="HSQLDB Connection @3ba8cacd", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200027, name="Image Fetcher 0", group="main") THREAD START (obj=50000133, id = 200028, name="Thread-4", group="main") THREAD START (obj=50000133, id = 200029, name="TimerQueue", group="system") THREAD END (id = 200028) THREAD START (obj=5000162d, id = 200030, name="Thread-5", group="main") THREAD END (id = 200030) THREAD END (id = 200001) THREAD START (obj=50000133, id = 200031, name="DestroyJavaVM", group="main") THREAD START (obj=50000133, id = 200032, name="Swing-Shell", group="system") THREAD START (obj=500016f1, id = 200033, name="Basic L&F File Loading Thread", group="main") THREAD END (id = 200033) THREAD START (obj=500016f1, id = 200034, name="Basic L&F File Loading Thread", group="main") THREAD END (id = 200034) THREAD START (obj=500016f1, id = 200035, name="Basic L&F File Loading Thread", group="main") THREAD END (id = 200035) THREAD START (obj=500016f1, id = 200036, name="Basic L&F File Loading Thread", group="main") THREAD END (id = 200036) THREAD END (id = 200027) THREAD START (obj=50000133, id = 200037, name="HSQLDB Connection @24c67c0f", group="HSQLDB Connections @51cfc277") THREAD END (id = 200037) THREAD START (obj=50000133, id = 200038, name="HSQLDB Connection @684ee543", group="HSQLDB Connections @51cfc277") THREAD END (id = 200038) THREAD START (obj=50000133, id = 200039, name="HSQLDB Connection @7747027a", group="HSQLDB Connections @51cfc277") THREAD END (id = 200039) THREAD START (obj=50000133, id = 200040, name="HSQLDB Connection @288fbf0e", group="HSQLDB Connections @51cfc277") THREAD END (id = 200040) THREAD START (obj=50000133, id = 200041, name="HSQLDB Connection @67177a6", group="HSQLDB Connections @51cfc277") THREAD END (id = 200041) THREAD START (obj=50000133, id = 200042, name="HSQLDB Connection @592e4ff9", group="HSQLDB Connections @51cfc277") THREAD END (id = 200042) THREAD START (obj=50000133, id = 200043, name="HSQLDB Connection @597ea32c", group="HSQLDB Connections @51cfc277") THREAD END (id = 200043) THREAD START (obj=50000133, id = 200044, name="HSQLDB Connection @3a7faad6", group="HSQLDB Connections @51cfc277") THREAD END (id = 200044) THREAD START (obj=50000133, id = 200045, name="HSQLDB Connection @9695ed7", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200046, name="HSQLDB Connection @74a5eac1", group="HSQLDB Connections @51cfc277") THREAD END (id = 200046) THREAD START (obj=50000133, id = 200047, name="HSQLDB Connection @4827a078", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200048, name="HSQLDB Connection @35b4e829", group="HSQLDB Connections @51cfc277") THREAD END (id = 200048) THREAD START (obj=50000133, id = 200049, name="HSQLDB Connection @2abe707a", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200050, name="HSQLDB Connection @768179c2", group="HSQLDB Connections @51cfc277") THREAD END (id = 200050) THREAD START (obj=50000133, id = 200051, name="HSQLDB Connection @14c7b5e7", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200052, name="HSQLDB Connection @354fed2", group="HSQLDB Connections @51cfc277") THREAD END (id = 200052) THREAD START (obj=50000133, id = 200053, name="HSQLDB Connection @5b519e2b", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200054, name="HSQLDB Connection @34313714", group="HSQLDB Connections @51cfc277") THREAD END (id = 200054) THREAD START (obj=50000133, id = 200055, name="HSQLDB Connection @6fbc18ca", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200056, name="HSQLDB Connection @353f9f30", group="HSQLDB Connections @51cfc277") THREAD END (id = 200056) THREAD START (obj=50000133, id = 200057, name="HSQLDB Connection @766c3bde", group="HSQLDB Connections @51cfc277") THREAD END (id = 200057) THREAD START (obj=50000133, id = 200058, name="HSQLDB Connection @78abd604", group="HSQLDB Connections @51cfc277") THREAD END (id = 200058) THREAD START (obj=50000133, id = 200059, name="HSQLDB Connection @4a65d816", group="HSQLDB Connections @51cfc277") THREAD END (id = 200059) THREAD START (obj=50000133, id = 200060, name="HSQLDB Connection @6261d064", group="HSQLDB Connections @51cfc277") THREAD END (id = 200060) THREAD START (obj=50000133, id = 200061, name="HSQLDB Connection @519e09e8", group="HSQLDB Connections @51cfc277") THREAD END (id = 200061) THREAD START (obj=50000133, id = 200062, name="HSQLDB Connection @6ed76e89", group="HSQLDB Connections @51cfc277") THREAD END (id = 200062) THREAD START (obj=50000133, id = 200063, name="HSQLDB Connection @2c39f3bb", group="HSQLDB Connections @51cfc277") THREAD END (id = 200063) THREAD START (obj=50000133, id = 200064, name="HSQLDB Connection @176150c", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200065, name="HSQLDB Connection @1fea8fc0", group="HSQLDB Connections @51cfc277") THREAD END (id = 200065) THREAD START (obj=50000133, id = 200066, name="HSQLDB Connection @76a0416a", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200067, name="HSQLDB Connection @16331538", group="HSQLDB Connections @51cfc277") THREAD END (id = 200067) THREAD START (obj=50000133, id = 200068, name="HSQLDB Connection @33805516", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200069, name="HSQLDB Connection @1a970e7c", group="HSQLDB Connections @51cfc277") THREAD END (id = 200069) THREAD START (obj=50000133, id = 200070, name="HSQLDB Connection @55136092", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200071, name="HSQLDB Connection @605bcd16", group="HSQLDB Connections @51cfc277") THREAD END (id = 200071) THREAD START (obj=50000133, id = 200072, name="HSQLDB Connection @64047668", group="HSQLDB Connections @51cfc277") THREAD END (id = 200072) THREAD START (obj=50000133, id = 200073, name="HSQLDB Connection @13afca88", group="HSQLDB Connections @51cfc277") THREAD END (id = 200073) THREAD START (obj=50000133, id = 200074, name="HSQLDB Connection @374d8c71", group="HSQLDB Connections @51cfc277") THREAD END (id = 200074) THREAD START (obj=50000133, id = 200075, name="HSQLDB Connection @3490b317", group="HSQLDB Connections @51cfc277") THREAD END (id = 200075) THREAD START (obj=50000133, id = 200076, name="HSQLDB Connection @7f62a9bf", group="HSQLDB Connections @51cfc277") THREAD END (id = 200076) THREAD START (obj=50000133, id = 200077, name="HSQLDB Connection @34dea091", group="HSQLDB Connections @51cfc277") THREAD END (id = 200077) THREAD START (obj=50000133, id = 200078, name="HSQLDB Connection @da27335", group="HSQLDB Connections @51cfc277") THREAD END (id = 200078) THREAD START (obj=50000133, id = 200079, name="HSQLDB Connection @1ba5cfae", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200080, name="HSQLDB Connection @215bfaa5", group="HSQLDB Connections @51cfc277") THREAD END (id = 200080) THREAD START (obj=50000133, id = 200081, name="HSQLDB Connection @70ccb7e0", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200082, name="HSQLDB Connection @6f6dc3c9", group="HSQLDB Connections @51cfc277") THREAD END (id = 200082) THREAD START (obj=50000133, id = 200083, name="HSQLDB Connection @31961976", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200084, name="HSQLDB Connection @7a2897ac", group="HSQLDB Connections @51cfc277") THREAD END (id = 200084) THREAD START (obj=50000133, id = 200085, name="HSQLDB Connection @5e681ff4", group="HSQLDB Connections @51cfc277") THREAD END (id = 200070) THREAD END (id = 200045) THREAD END (id = 200047) THREAD END (id = 200049) THREAD END (id = 200051) THREAD END (id = 200053) THREAD END (id = 200055) THREAD END (id = 200064) THREAD END (id = 200066) THREAD END (id = 200068) THREAD END (id = 200079) THREAD END (id = 200081) THREAD END (id = 200083) THREAD END (id = 200085) THREAD START (obj=50000133, id = 200086, name="HSQLDB Connection @64c182ee", group="HSQLDB Connections @51cfc277") THREAD END (id = 200086) THREAD START (obj=50000133, id = 200087, name="HSQLDB Connection @5cc145f9", group="HSQLDB Connections @51cfc277") THREAD END (id = 200087) THREAD START (obj=50000133, id = 200088, name="HSQLDB Connection @25ecaa1f", group="HSQLDB Connections @51cfc277") THREAD END (id = 200088) THREAD START (obj=50000133, id = 200089, name="HSQLDB Connection @b9f370", group="HSQLDB Connections @51cfc277") THREAD END (id = 200089) THREAD START (obj=50000133, id = 200090, name="HSQLDB Connection @4fee0216", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200091, name="HSQLDB Connection @2ab026a0", group="HSQLDB Connections @51cfc277") THREAD END (id = 200090) THREAD END (id = 200091) THREAD START (obj=50000133, id = 200092, name="HSQLDB Connection @656a08e5", group="HSQLDB Connections @51cfc277") THREAD END (id = 200092) THREAD START (obj=50000133, id = 200093, name="HSQLDB Connection @a10f000", group="HSQLDB Connections @51cfc277") THREAD END (id = 200093) THREAD START (obj=50000133, id = 200094, name="HSQLDB Connection @13695cf", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200095, name="HSQLDB Connection @13e3bb25", group="HSQLDB Connections @51cfc277") THREAD END (id = 200095) THREAD START (obj=50000133, id = 200096, name="HSQLDB Connection @6a809883", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200097, name="HSQLDB Connection @34ba89c5", group="HSQLDB Connections @51cfc277") THREAD END (id = 200097) THREAD START (obj=50000133, id = 200098, name="HSQLDB Connection @5d3704e9", group="HSQLDB Connections @51cfc277") THREAD END (id = 200098) THREAD END (id = 200094) THREAD END (id = 200096) THREAD START (obj=50000133, id = 200099, name="HSQLDB Connection @67c8f3da", group="HSQLDB Connections @51cfc277") THREAD END (id = 200099) THREAD START (obj=50000133, id = 200100, name="HSQLDB Connection @49ea903c", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200101, name="HSQLDB Connection @137a9034", group="HSQLDB Connections @51cfc277") THREAD END (id = 200101) THREAD START (obj=50000133, id = 200102, name="HSQLDB Connection @7fab0bc2", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200103, name="HSQLDB Connection @75a713db", group="HSQLDB Connections @51cfc277") THREAD END (id = 200103) THREAD START (obj=50000133, id = 200104, name="HSQLDB Connection @266a1b46", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200105, name="HSQLDB Connection @322c2f49", group="HSQLDB Connections @51cfc277") THREAD END (id = 200105) THREAD START (obj=50000133, id = 200106, name="HSQLDB Connection @757b7533", group="HSQLDB Connections @51cfc277") THREAD END (id = 200106) THREAD START (obj=50000133, id = 200107, name="HSQLDB Connection @572c4a12", group="HSQLDB Connections @51cfc277") THREAD END (id = 200107) THREAD START (obj=50000133, id = 200108, name="HSQLDB Connection @7b725d6d", group="HSQLDB Connections @51cfc277") THREAD END (id = 200108) THREAD START (obj=50000133, id = 200109, name="HSQLDB Connection @c7d6ff4", group="HSQLDB Connections @51cfc277") THREAD END (id = 200109) THREAD START (obj=50000133, id = 200110, name="HSQLDB Connection @67771b9b", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200111, name="HSQLDB Connection @5b02484e", group="HSQLDB Connections @51cfc277") THREAD END (id = 200110) THREAD END (id = 200111) THREAD START (obj=50000133, id = 200112, name="HSQLDB Connection @591c486a", group="HSQLDB Connections @51cfc277") THREAD END (id = 200112) THREAD START (obj=50000133, id = 200113, name="HSQLDB Connection @11c1cc4a", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200114, name="HSQLDB Connection @59127dc0", group="HSQLDB Connections @51cfc277") THREAD END (id = 200114) THREAD START (obj=50000133, id = 200115, name="HSQLDB Connection @5b888e9e", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200116, name="HSQLDB Connection @3ffc5306", group="HSQLDB Connections @51cfc277") THREAD END (id = 200116) THREAD START (obj=50000133, id = 200117, name="HSQLDB Connection @3fa980b", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200118, name="HSQLDB Connection @1070ed00", group="HSQLDB Connections @51cfc277") THREAD END (id = 200118) THREAD START (obj=50000133, id = 200119, name="HSQLDB Connection @7885bab4", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200120, name="HSQLDB Connection @3412d9bc", group="HSQLDB Connections @51cfc277") THREAD END (id = 200120) THREAD START (obj=50000133, id = 200121, name="HSQLDB Connection @71f31c64", group="HSQLDB Connections @51cfc277") THREAD END (id = 200121) THREAD START (obj=50000133, id = 200122, name="HSQLDB Connection @64e17c9c", group="HSQLDB Connections @51cfc277") THREAD END (id = 200122) THREAD START (obj=50000133, id = 200123, name="HSQLDB Connection @4d2a9eda", group="HSQLDB Connections @51cfc277") THREAD END (id = 200123) THREAD START (obj=50000133, id = 200124, name="HSQLDB Connection @369332f4", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200125, name="HSQLDB Connection @5159f99c", group="HSQLDB Connections @51cfc277") THREAD END (id = 200124) THREAD END (id = 200125) THREAD START (obj=50000133, id = 200126, name="HSQLDB Connection @91219a9", group="HSQLDB Connections @51cfc277") THREAD END (id = 200126) THREAD START (obj=50000133, id = 200127, name="HSQLDB Connection @183ee3a0", group="HSQLDB Connections @51cfc277") THREAD END (id = 200127) THREAD START (obj=50000133, id = 200128, name="HSQLDB Connection @17f067ff", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200129, name="HSQLDB Connection @5a07232e", group="HSQLDB Connections @51cfc277") THREAD END (id = 200129) THREAD START (obj=50000133, id = 200130, name="HSQLDB Connection @45984427", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200131, name="HSQLDB Connection @758a81d9", group="HSQLDB Connections @51cfc277") THREAD END (id = 200131) THREAD START (obj=50000133, id = 200132, name="HSQLDB Connection @3c956913", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200133, name="HSQLDB Connection @279ad355", group="HSQLDB Connections @51cfc277") THREAD END (id = 200133) THREAD START (obj=50000133, id = 200134, name="HSQLDB Connection @27ea3262", group="HSQLDB Connections @51cfc277") THREAD END (id = 200100) THREAD END (id = 200134) THREAD END (id = 200102) THREAD END (id = 200104) THREAD END (id = 200113) THREAD END (id = 200115) THREAD END (id = 200117) THREAD END (id = 200119) THREAD END (id = 200128) THREAD END (id = 200132) THREAD END (id = 200130) THREAD START (obj=50000133, id = 200135, name="HSQLDB Connection @7e374aac", group="HSQLDB Connections @51cfc277") THREAD END (id = 200135) THREAD START (obj=50000133, id = 200136, name="HSQLDB Connection @5c9f4521", group="HSQLDB Connections @51cfc277") THREAD END (id = 200136) THREAD START (obj=50000133, id = 200137, name="HSQLDB Connection @13f5483e", group="HSQLDB Connections @51cfc277") THREAD END (id = 200137) THREAD START (obj=50000133, id = 200138, name="HSQLDB Connection @22bb1eab", group="HSQLDB Connections @51cfc277") THREAD END (id = 200138) THREAD START (obj=50000133, id = 200139, name="HSQLDB Connection @432db58d", group="HSQLDB Connections @51cfc277") THREAD END (id = 200139) THREAD START (obj=50000133, id = 200140, name="HSQLDB Connection @3b46305", group="HSQLDB Connections @51cfc277") THREAD END (id = 200140) THREAD START (obj=50000133, id = 200141, name="HSQLDB Connection @71eb195f", group="HSQLDB Connections @51cfc277") THREAD END (id = 200141) THREAD START (obj=50000133, id = 200142, name="HSQLDB Connection @1e512082", group="HSQLDB Connections @51cfc277") THREAD END (id = 200142) THREAD START (obj=50000133, id = 200143, name="HSQLDB Connection @48723f80", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200144, name="HSQLDB Connection @46bf784b", group="HSQLDB Connections @51cfc277") THREAD END (id = 200144) THREAD START (obj=50000133, id = 200145, name="HSQLDB Connection @70317b12", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200146, name="HSQLDB Connection @6444e5b7", group="HSQLDB Connections @51cfc277") THREAD END (id = 200146) THREAD START (obj=50000133, id = 200147, name="HSQLDB Connection @6a523a4f", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200148, name="HSQLDB Connection @7dafbdd4", group="HSQLDB Connections @51cfc277") THREAD END (id = 200148) THREAD START (obj=50000133, id = 200149, name="HSQLDB Connection @2f06820e", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200150, name="HSQLDB Connection @5c7b1ff8", group="HSQLDB Connections @51cfc277") THREAD END (id = 200150) THREAD START (obj=50000133, id = 200151, name="HSQLDB Connection @3e01c61c", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200152, name="HSQLDB Connection @d7a0c96", group="HSQLDB Connections @51cfc277") THREAD END (id = 200152) THREAD START (obj=50000133, id = 200153, name="HSQLDB Connection @36525347", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200154, name="HSQLDB Connection @5eddb0e6", group="HSQLDB Connections @51cfc277") THREAD END (id = 200154) THREAD START (obj=50000133, id = 200155, name="HSQLDB Connection @58dde0b0", group="HSQLDB Connections @51cfc277") THREAD END (id = 200155) THREAD START (obj=50000133, id = 200156, name="HSQLDB Connection @47ffa2ec", group="HSQLDB Connections @51cfc277") THREAD END (id = 200156) THREAD START (obj=50000133, id = 200157, name="HSQLDB Connection @7642b4f1", group="HSQLDB Connections @51cfc277") THREAD END (id = 200157) THREAD START (obj=50000133, id = 200158, name="HSQLDB Connection @21c0070f", group="HSQLDB Connections @51cfc277") THREAD END (id = 200158) THREAD START (obj=50000133, id = 200159, name="HSQLDB Connection @7cd1be26", group="HSQLDB Connections @51cfc277") THREAD END (id = 200159) THREAD START (obj=50000133, id = 200160, name="HSQLDB Connection @58017a75", group="HSQLDB Connections @51cfc277") THREAD END (id = 200160) THREAD START (obj=50000133, id = 200161, name="HSQLDB Connection @43a9cdf9", group="HSQLDB Connections @51cfc277") THREAD END (id = 200161) THREAD START (obj=50000133, id = 200162, name="HSQLDB Connection @417256af", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200163, name="HSQLDB Connection @14b5b933", group="HSQLDB Connections @51cfc277") THREAD END (id = 200163) THREAD START (obj=50000133, id = 200164, name="HSQLDB Connection @2e644784", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200165, name="HSQLDB Connection @7577168a", group="HSQLDB Connections @51cfc277") THREAD END (id = 200165) THREAD START (obj=50000133, id = 200166, name="HSQLDB Connection @4a7eb2c3", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200167, name="HSQLDB Connection @672f7719", group="HSQLDB Connections @51cfc277") THREAD END (id = 200167) THREAD START (obj=50000133, id = 200168, name="HSQLDB Connection @11236a4b", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200169, name="HSQLDB Connection @7affa511", group="HSQLDB Connections @51cfc277") THREAD END (id = 200169) THREAD START (obj=50000133, id = 200170, name="HSQLDB Connection @41b192cc", group="HSQLDB Connections @51cfc277") THREAD END (id = 200170) THREAD START (obj=50000133, id = 200171, name="HSQLDB Connection @1f9df19b", group="HSQLDB Connections @51cfc277") THREAD END (id = 200171) THREAD START (obj=50000133, id = 200172, name="HSQLDB Connection @58e6c418", group="HSQLDB Connections @51cfc277") THREAD END (id = 200172) THREAD START (obj=50000133, id = 200173, name="HSQLDB Connection @716dadda", group="HSQLDB Connections @51cfc277") THREAD END (id = 200173) THREAD START (obj=50000133, id = 200174, name="HSQLDB Connection @4e94ac10", group="HSQLDB Connections @51cfc277") THREAD END (id = 200174) THREAD START (obj=50000133, id = 200175, name="HSQLDB Connection @3a70dd47", group="HSQLDB Connections @51cfc277") THREAD END (id = 200175) THREAD START (obj=50000133, id = 200176, name="HSQLDB Connection @76c511b", group="HSQLDB Connections @51cfc277") THREAD END (id = 200176) THREAD START (obj=50000133, id = 200177, name="HSQLDB Connection @3137c799", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200178, name="HSQLDB Connection @65f27299", group="HSQLDB Connections @51cfc277") THREAD END (id = 200178) THREAD START (obj=50000133, id = 200179, name="HSQLDB Connection @67e90fee", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200180, name="HSQLDB Connection @5ea2f68b", group="HSQLDB Connections @51cfc277") THREAD END (id = 200180) THREAD START (obj=50000133, id = 200181, name="HSQLDB Connection @5aa76583", group="HSQLDB Connections @51cfc277") THREAD START (obj=50000133, id = 200182, name="HSQLDB Connection @453db1eb", group="HSQLDB Connections @51cfc277") THREAD END (id = 200182) THREAD START (obj=50000133, id = 200183, name="HSQLDB Connection @28245558", group="HSQLDB Connections @51cfc277") THREAD END (id = 200145) THREAD END (id = 200177) THREAD END (id = 200143) THREAD END (id = 200147) THREAD END (id = 200149) THREAD END (id = 200151) THREAD END (id = 200153) THREAD END (id = 200162) THREAD END (id = 200164) THREAD END (id = 200166) THREAD END (id = 200168) THREAD END (id = 200179) THREAD END (id = 200181) THREAD END (id = 200183) THREAD START (obj=50000133, id = 200184, name="Batik CleanerThread", group="main") THREAD START (obj=50000133, id = 200185, name="Image Fetcher 0", group="main") THREAD START (obj=50001978, id = 200186, name="Thread-7", group="main") THREAD START (obj=50001978, id = 200187, name="Thread-8", group="main") THREAD START (obj=50001978, id = 200188, name="Thread-9", group="main") THREAD START (obj=50001978, id = 200189, name="Thread-10", group="main") THREAD START (obj=50001978, id = 200190, name="Thread-11", group="main") THREAD START (obj=50001978, id = 200191, name="Thread-12", group="main") THREAD START (obj=50001978, id = 200192, name="Thread-13", group="main") THREAD START (obj=50001978, id = 200193, name="Thread-14", group="main") THREAD START (obj=50000133, id = 200194, name="HSQLDB Connection @a90b3f7", group="HSQLDB Connections @59229fdf") THREAD START (obj=50000133, id = 200195, name="Thread-15", group="main") THREAD END (id = 200195) THREAD END (id = 200025) THREAD START (obj=50001d1c, id = 200196, name="Thread-16", group="main") THREAD END (id = 200191) THREAD START (obj=50001d1c, id = 200197, name="Thread-17", group="main") THREAD END (id = 200193) THREAD START (obj=50001d1c, id = 200199, name="Thread-19", group="main") THREAD END (id = 200189) THREAD START (obj=50001d1c, id = 200198, name="Thread-18", group="main") THREAD START (obj=50001d1c, id = 200200, name="Thread-20", group="main") THREAD END (id = 200187) THREAD START (obj=50001d1c, id = 200201, name="Thread-21", group="main") THREAD START (obj=50001d1c, id = 200202, name="Thread-23", group="main") THREAD END (id = 200192) THREAD END (id = 200188) THREAD START (obj=50001d1c, id = 200203, name="Thread-22", group="main") THREAD END (id = 200186) THREAD END (id = 200190) THREAD END (id = 200196) THREAD END (id = 200202) THREAD END (id = 200198) THREAD END (id = 200203) THREAD END (id = 200200) THREAD END (id = 200201) THREAD END (id = 200199) THREAD END (id = 200197) THREAD START (obj=5000074b, id = 200204, name="tpc09-plant-dynamics-woody", group="main") THREAD START (obj=50000133, id = 200205, name="HSQLDB Connection @304c61c2", group="HSQLDB Connections @59229fdf") THREAD END (id = 200185) THREAD START (obj=50000133, id = 200206, name="HSQLDB Connection @19b9c35", group="HSQLDB Connections @59229fdf") THREAD END (id = 200194) THREAD START (obj=50000133, id = 200207, name="HSQLDB Connection @30e8ea4f", group="HSQLDB Connections @51cfc277") THREAD START (obj=5000162d, id = 200208, name="Exec Stderr Gobbler-1", group="main") THREAD START (obj=5000162d, id = 200209, name="Exec Stdout Gobbler-0", group="main") THREAD END (id = 200208) THREAD END (id = 200209) THREAD START (obj=5000162d, id = 200210, name="Exec Stdout Gobbler-2", group="main") THREAD START (obj=5000162d, id = 200211, name="Exec Stderr Gobbler-3", group="main") THREAD END (id = 200211) THREAD END (id = 200210) THREAD START (obj=5000162d, id = 200212, name="Exec Stdout Gobbler-4", group="main") THREAD START (obj=5000162d, id = 200213, name="Exec Stderr Gobbler-5", group="main") THREAD END (id = 200213) THREAD END (id = 200212) THREAD START (obj=5000162d, id = 200214, name="Exec Stdout Gobbler-6", group="main") THREAD START (obj=5000162d, id = 200215, name="Exec Stderr Gobbler-7", group="main") THREAD END (id = 200214) THREAD END (id = 200215) THREAD START (obj=5000162d, id = 200216, name="Exec Stderr Gobbler-9", group="main") THREAD START (obj=5000162d, id = 200217, name="Exec Stdout Gobbler-8", group="main") THREAD END (id = 200216) THREAD START (obj=5000162d, id = 200218, name="Exec Stderr Gobbler-11", group="main") THREAD END (id = 200217) THREAD START (obj=5000162d, id = 200219, name="Exec Stdout Gobbler-10", group="main") THREAD END (id = 200218) THREAD END (id = 200219) THREAD START (obj=5000162d, id = 200220, name="Exec Stdout Gobbler-12", group="main") THREAD START (obj=5000162d, id = 200221, name="Exec Stderr Gobbler-13", group="main") THREAD END (id = 200220) THREAD END (id = 200221) THREAD START (obj=5000162d, id = 200222, name="Exec Stderr Gobbler-15", group="main") THREAD START (obj=5000162d, id = 200223, name="Exec Stdout Gobbler-14", group="main") THREAD END (id = 200223) THREAD END (id = 200222) THREAD START (obj=5000162d, id = 200224, name="Exec Stdout Gobbler-16", group="main") THREAD START (obj=5000162d, id = 200225, name="Exec Stderr Gobbler-17", group="main") THREAD END (id = 200225) THREAD END (id = 200224) THREAD START (obj=5000162d, id = 200226, name="Exec Stdout Gobbler-18", group="main") THREAD START (obj=5000162d, id = 200227, name="Exec Stderr Gobbler-19", group="main") THREAD END (id = 200226) THREAD END (id = 200227) THREAD START (obj=5000162d, id = 200228, name="Exec Stdout Gobbler-20", group="main") THREAD START (obj=5000162d, id = 200229, name="Exec Stderr Gobbler-21", group="main") THREAD END (id = 200228) THREAD END (id = 200229) THREAD START (obj=5000162d, id = 200230, name="Exec Stdout Gobbler-22", group="main") THREAD START (obj=5000162d, id = 200231, name="Exec Stderr Gobbler-23", group="main") THREAD END (id = 200230) THREAD END (id = 200231) THREAD START (obj=5000162d, id = 200232, name="Exec Stderr Gobbler-25", group="main") THREAD START (obj=5000162d, id = 200233, name="Exec Stdout Gobbler-24", group="main") THREAD END (id = 200233) THREAD END (id = 200232) THREAD START (obj=5000162d, id = 200234, name="Exec Stderr Gobbler-27", group="main") THREAD START (obj=5000162d, id = 200235, name="Exec Stdout Gobbler-26", group="main") THREAD END (id = 200234) THREAD END (id = 200235) THREAD START (obj=5000162d, id = 200236, name="Exec Stderr Gobbler-29", group="main") THREAD START (obj=5000162d, id = 200237, name="Exec Stdout Gobbler-28", group="main") THREAD END (id = 200237) THREAD END (id = 200236) THREAD START (obj=5000162d, id = 200238, name="Exec Stderr Gobbler-31", group="main") THREAD START (obj=5000162d, id = 200239, name="Exec Stdout Gobbler-30", group="main") THREAD END (id = 200239) THREAD END (id = 200238) THREAD START (obj=5000162d, id = 200240, name="Exec Stdout Gobbler-32", group="main") THREAD START (obj=5000162d, id = 200241, name="Exec Stderr Gobbler-33", group="main") THREAD END (id = 200241) THREAD END (id = 200240) THREAD START (obj=5000162d, id = 200242, name="Exec Stderr Gobbler-35", group="main") THREAD START (obj=5000162d, id = 200243, name="Exec Stdout Gobbler-34", group="main") THREAD END (id = 200243) THREAD END (id = 200242) THREAD START (obj=5000162d, id = 200245, name="Exec Stdout Gobbler-36", group="main") THREAD START (obj=5000162d, id = 200244, name="Exec Stderr Gobbler-37", group="main") THREAD END (id = 200245) THREAD END (id = 200244) THREAD START (obj=5000162d, id = 200246, name="Exec Stdout Gobbler-38", group="main") THREAD START (obj=5000162d, id = 200247, name="Exec Stderr Gobbler-39", group="main") THREAD END (id = 200246) THREAD END (id = 200247) THREAD START (obj=5000162d, id = 200248, name="Exec Stderr Gobbler-41", group="main") THREAD START (obj=5000162d, id = 200249, name="Exec Stdout Gobbler-40", group="main") THREAD END (id = 200248) THREAD END (id = 200249) THREAD START (obj=5000162d, id = 200250, name="Exec Stdout Gobbler-42", group="main") THREAD START (obj=5000162d, id = 200251, name="Exec Stderr Gobbler-43", group="main") THREAD END (id = 200250) THREAD END (id = 200251) THREAD START (obj=5000162d, id = 200252, name="Exec Stdout Gobbler-44", group="main") THREAD START (obj=5000162d, id = 200253, name="Exec Stderr Gobbler-45", group="main") THREAD END (id = 200252) THREAD END (id = 200253) THREAD START (obj=50000133, id = 200254, name="Image Fetcher 0", group="main") THREAD START (obj=50000133, id = 200255, name="SocketListener", group="main") THREAD START (obj=5000162d, id = 200256, name="Exec Stderr Gobbler-47", group="main") THREAD START (obj=5000162d, id = 200257, name="Exec Stdout Gobbler-46", group="main") THREAD END (id = 200257) THREAD END (id = 200256) THREAD START (obj=5000162d, id = 200258, name="Exec Stderr Gobbler-49", group="main") THREAD START (obj=5000162d, id = 200259, name="Exec Stdout Gobbler-48", group="main") THREAD END (id = 200259) THREAD END (id = 200258) THREAD START (obj=5000162d, id = 200260, name="Exec Stderr Gobbler-51", group="main") THREAD START (obj=5000162d, id = 200261, name="Exec Stdout Gobbler-50", group="main") THREAD END (id = 200261) THREAD END (id = 200260) THREAD START (obj=5000162d, id = 200262, name="Exec Stdout Gobbler-52", group="main") THREAD START (obj=5000162d, id = 200263, name="Exec Stderr Gobbler-53", group="main") THREAD END (id = 200262) THREAD END (id = 200263) THREAD START (obj=5000162d, id = 200264, name="Exec Stderr Gobbler-55", group="main") THREAD START (obj=5000162d, id = 200265, name="Exec Stdout Gobbler-54", group="main") THREAD END (id = 200254) THREAD END (id = 200265) THREAD END (id = 200264) THREAD START (obj=5000162d, id = 200266, name="Exec Stdout Gobbler-56", group="main") THREAD START (obj=5000162d, id = 200267, name="Exec Stderr Gobbler-57", group="main") THREAD END (id = 200267) THREAD END (id = 200266) THREAD START (obj=5000162d, id = 200268, name="Exec Stderr Gobbler-59", group="main") THREAD START (obj=5000162d, id = 200269, name="Exec Stdout Gobbler-58", group="main") THREAD END (id = 200269) THREAD END (id = 200268) THREAD START (obj=5000162d, id = 200270, name="Exec Stderr Gobbler-61", group="main") THREAD START (obj=5000162d, id = 200271, name="Exec Stdout Gobbler-60", group="main") THREAD END (id = 200271) THREAD END (id = 200270) THREAD START (obj=50000133, id = 200272, name="Image Fetcher 0", group="main") THREAD START (obj=5000162d, id = 200273, name="Exec Stderr Gobbler-63", group="main") THREAD START (obj=5000162d, id = 200274, name="Exec Stdout Gobbler-62", group="main") THREAD END (id = 200273) THREAD END (id = 200274) THREAD START (obj=5000162d, id = 200275, name="Exec Stderr Gobbler-65", group="main") THREAD START (obj=5000162d, id = 200276, name="Exec Stdout Gobbler-64", group="main") THREAD END (id = 200275) THREAD END (id = 200276) THREAD START (obj=5000162d, id = 200277, name="Exec Stdout Gobbler-66", group="main") THREAD START (obj=5000162d, id = 200278, name="Exec Stderr Gobbler-67", group="main") THREAD END (id = 200277) THREAD END (id = 200278) THREAD START (obj=5000162d, id = 200279, name="Exec Stderr Gobbler-69", group="main") THREAD START (obj=5000162d, id = 200280, name="Exec Stdout Gobbler-68", group="main") THREAD END (id = 200279) THREAD END (id = 200280) THREAD START (obj=5000162d, id = 200281, name="Exec Stderr Gobbler-71", group="main") THREAD START (obj=5000162d, id = 200282, name="Exec Stdout Gobbler-70", group="main") THREAD END (id = 200281) THREAD END (id = 200282) THREAD END (id = 200204) THREAD START (obj=50000133, id = 200283, name="pool-3-thread-1", group="main") THREAD END (id = 200272) THREAD END (id = 200283) THREAD START (obj=50000af5, id = 200284, name="Thread-24", group="main") THREAD END (id = 200284) THREAD START (obj=50000133, id = 200285, name="Thread-6", group="main") THREAD END (id = 200285) THREAD START (obj=50000133, id = 200286, name="Thread-1", group="system") THREAD END (id = 200032) THREAD START (obj=50000af5, id = 200287, name="Thread-0", group="main") THREAD END (id = 200287) THREAD START (obj=50000133, id = 200288, name="Thread-2", group="system") THREAD END (id = 200011) THREAD END (id = 200288) THREAD END (id = 200008) THREAD END (id = 200286) THREAD END (id = 200010) THREAD END (id = 200002) TRACE 302036: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.net.SocketInputStream.read(SocketInputStream.java:182) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 302008: java.net.PlainSocketImpl.socketAccept(PlainSocketImpl.java:Unknown line) java.net.PlainSocketImpl.accept(PlainSocketImpl.java:390) java.net.ServerSocket.implAccept(ServerSocket.java:453) java.net.ServerSocket.accept(ServerSocket.java:421) org.hsqldb.Server.run(:Unknown line) org.hsqldb.Server.access$000(:Unknown line) org.hsqldb.Server$ServerThread.run(:Unknown line) TRACE 300983: sun.awt.windows.WToolkit.eventLoop(WToolkit.java:Unknown line) sun.awt.windows.WToolkit.run(WToolkit.java:291) java.lang.Thread.run(Thread.java:619) TRACE 305916: java.io.FileInputStream.readBytes(FileInputStream.java:Unknown line) java.io.FileInputStream.read(FileInputStream.java:199) sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:264) sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:306) sun.nio.cs.StreamDecoder.read(StreamDecoder.java:158) java.io.InputStreamReader.read(InputStreamReader.java:167) org.ecoinformatics.seek.R.RExpression$_StreamReaderThread._read(RExpression.java:1587) org.ecoinformatics.seek.R.RExpression$_StreamReaderThread.run(RExpression.java:1559) TRACE 305919: java.lang.ProcessImpl.waitFor(ProcessImpl.java:Unknown line) org.ecoinformatics.seek.R.RExpression.fire(RExpression.java:918) ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469) ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188) ptolemy.actor.CompositeActor.fire(CompositeActor.java:458) ptolemy.actor.Manager.iterate(Manager.java:714) ptolemy.actor.Manager.execute(Manager.java:349) ptolemy.actor.Manager.run(Manager.java:1119) ptolemy.actor.Manager$3.run(Manager.java:1160) TRACE 301943: java.io.RandomAccessFile.length(RandomAccessFile.java:Unknown line) org.hsqldb.persist.ScaledRAFile.read(:Unknown line) org.hsqldb.persist.TextCache.readObject(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.persist.TextCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.TextTable.connect(:Unknown line) org.hsqldb.TextTable.openCache(:Unknown line) org.hsqldb.TextTable.setDataSource(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.processSet(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.executePart(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.execute(:Unknown line) org.hsqldb.Session.sqlExecuteDirectNoPreChecks(:Unknown line) org.hsqldb.scriptio.ScriptReaderText.readDDL(:Unknown line) org.hsqldb.scriptio.ScriptReaderBase.readAll(:Unknown line) org.hsqldb.persist.Log.processScript(:Unknown line) org.hsqldb.persist.Log.open(:Unknown line) org.hsqldb.persist.Logger.openLog(:Unknown line) org.hsqldb.Database.reopen(:Unknown line) org.hsqldb.Database.open(:Unknown line) TRACE 306041: java.net.PlainSocketImpl.socketAccept(PlainSocketImpl.java:Unknown line) java.net.PlainSocketImpl.accept(PlainSocketImpl.java:390) java.net.ServerSocket.implAccept(ServerSocket.java:453) java.net.ServerSocket.accept(ServerSocket.java:421) ij.SocketListener.run(SocketListener.java:31) java.lang.Thread.run(Thread.java:619) TRACE 305917: java.io.FileInputStream.readBytes(FileInputStream.java:Unknown line) java.io.FileInputStream.read(FileInputStream.java:199) java.io.BufferedInputStream.read1(BufferedInputStream.java:256) java.io.BufferedInputStream.read(BufferedInputStream.java:317) sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:264) sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:306) sun.nio.cs.StreamDecoder.read(StreamDecoder.java:158) java.io.InputStreamReader.read(InputStreamReader.java:167) org.ecoinformatics.seek.R.RExpression$_StreamReaderThread._read(RExpression.java:1587) org.ecoinformatics.seek.R.RExpression$_StreamReaderThread.run(RExpression.java:1559) TRACE 305918: java.io.FileOutputStream.writeBytes(FileOutputStream.java:Unknown line) java.io.FileOutputStream.write(FileOutputStream.java:260) java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:65) java.io.BufferedOutputStream.flush(BufferedOutputStream.java:123) sun.nio.cs.StreamEncoder.implFlush(StreamEncoder.java:278) sun.nio.cs.StreamEncoder.flush(StreamEncoder.java:122) java.io.OutputStreamWriter.flush(OutputStreamWriter.java:212) java.io.BufferedWriter.flush(BufferedWriter.java:236) org.ecoinformatics.seek.R.RExpression.fire(RExpression.java:902) ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469) ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188) ptolemy.actor.CompositeActor.fire(CompositeActor.java:458) ptolemy.actor.Manager.iterate(Manager.java:714) ptolemy.actor.Manager.execute(Manager.java:349) ptolemy.actor.Manager.run(Manager.java:1119) ptolemy.actor.Manager$3.run(Manager.java:1160) TRACE 302025: java.io.FileDescriptor.sync(FileDescriptor.java:Unknown line) org.hsqldb.lib.FileUtil$FileSync.sync(:Unknown line) org.hsqldb.scriptio.ScriptWriterBase.sync(:Unknown line) org.hsqldb.scriptio.ScriptWriterBase.run(:Unknown line) org.hsqldb.lib.HsqlTimer$TaskRunner.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 301921: java.nio.MappedByteBuffer.force0(MappedByteBuffer.java:Unknown line) java.nio.MappedByteBuffer.force(MappedByteBuffer.java:154) org.hsqldb.persist.ScaledRAFileNIO.(:Unknown line) org.hsqldb.persist.ScaledRAFileHybrid.newStore(:Unknown line) org.hsqldb.persist.ScaledRAFileHybrid.(:Unknown line) sun.reflect.NativeConstructorAccessorImpl.newInstance0(NativeConstructorAccessorImpl.java:Unknown line) sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) java.lang.reflect.Constructor.newInstance(Constructor.java:513) org.hsqldb.persist.ScaledRAFile.newScaledRAFile(:Unknown line) org.hsqldb.persist.DataFileCache.open(:Unknown line) org.hsqldb.persist.Log.getCache(:Unknown line) org.hsqldb.persist.Logger.getCache(:Unknown line) org.hsqldb.Table.(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.newTable(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.processCreateTable(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.processCreate(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.executePart(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.execute(:Unknown line) org.hsqldb.Session.sqlExecuteDirectNoPreChecks(:Unknown line) TRACE 305745: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecordingV7.regParameter(SQLRecordingV7.java:161) org.kepler.provenance.sql.SQLRecordingV8.regParameter(SQLRecordingV8.java:519) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1684) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1363) TRACE 305744: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecordingV7.regParameter(SQLRecordingV7.java:161) org.kepler.provenance.sql.SQLRecordingV8.regParameter(SQLRecordingV8.java:519) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1684) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1363) ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:940) TRACE 302016: java.io.FileDescriptor.sync(FileDescriptor.java:Unknown line) org.hsqldb.lib.FileUtil$FileSync.sync(:Unknown line) org.hsqldb.scriptio.ScriptWriterBase.sync(:Unknown line) org.hsqldb.persist.Log.synchLog(:Unknown line) org.hsqldb.persist.Log.setWriteDelay(:Unknown line) org.hsqldb.persist.Logger.setWriteDelay(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.processSet(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.executePart(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.execute(:Unknown line) org.hsqldb.Session.sqlExecuteDirectNoPreChecks(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305750: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecording.regPort(SQLRecording.java:314) org.kepler.provenance.sql.SQLRecordingV8.regPort(SQLRecordingV8.java:268) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1622) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1363) ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:940) TRACE 305717: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getRight(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305761: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecordingV7.regParameter(SQLRecordingV7.java:161) org.kepler.provenance.sql.SQLRecordingV8.regParameter(SQLRecordingV8.java:519) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1684) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) TRACE 302725: java.net.PlainSocketImpl.socketConnect(PlainSocketImpl.java:Unknown line) java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333) java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195) java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182) java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366) java.net.Socket.connect(Socket.java:525) java.net.Socket.connect(Socket.java:475) java.net.Socket.(Socket.java:372) java.net.Socket.(Socket.java:186) org.hsqldb.HsqlSocketFactory.createSocket(:Unknown line) org.hsqldb.HSQLClientConnection.openConnection(:Unknown line) org.hsqldb.HSQLClientConnection.initConnection(:Unknown line) org.hsqldb.HSQLClientConnection.(:Unknown line) org.hsqldb.jdbc.jdbcConnection.(:Unknown line) org.hsqldb.jdbcDriver.getConnection(:Unknown line) org.hsqldb.jdbcDriver.connect(:Unknown line) java.sql.DriverManager.getConnection(DriverManager.java:582) java.sql.DriverManager.getConnection(DriverManager.java:185) org.kepler.util.sql.HSQL._getConnection(HSQL.java:273) org.kepler.util.sql.HSQL._createCatalogIfNecessary(HSQL.java:122) TRACE 305764: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecording.regPort(SQLRecording.java:314) org.kepler.provenance.sql.SQLRecordingV8.regPort(SQLRecordingV8.java:268) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1622) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1363) TRACE 305715: org.hsqldb.Expression.compareValues(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.testCondition(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 300255: java.io.WinNTFileSystem.getBooleanAttributes(WinNTFileSystem.java:Unknown line) java.io.File.exists(File.java:733) sun.misc.URLClassPath$FileLoader.getResource(URLClassPath.java:995) sun.misc.URLClassPath.getResource(URLClassPath.java:168) java.net.URLClassLoader$1.run(URLClassLoader.java:192) java.security.AccessController.doPrivileged(AccessController.java:Unknown line) java.net.URLClassLoader.findClass(URLClassLoader.java:188) java.lang.ClassLoader.loadClass(ClassLoader.java:303) sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301) java.lang.ClassLoader.loadClass(ClassLoader.java:248) java.lang.ClassLoader.loadClassInternal(ClassLoader.java:316) java.lang.ClassLoader.defineClass1(ClassLoader.java:Unknown line) java.lang.ClassLoader.defineClass(ClassLoader.java:616) java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124) java.net.URLClassLoader.defineClass(URLClassLoader.java:260) java.net.URLClassLoader.access$000(URLClassLoader.java:56) java.net.URLClassLoader$1.run(URLClassLoader.java:195) java.security.AccessController.doPrivileged(AccessController.java:Unknown line) java.net.URLClassLoader.findClass(URLClassLoader.java:188) java.lang.ClassLoader.loadClass(ClassLoader.java:303) TRACE 301950: java.io.RandomAccessFile.length(RandomAccessFile.java:Unknown line) org.hsqldb.persist.ScaledRAFile.seek(:Unknown line) org.hsqldb.persist.TextCache.findNextUsedLinePos(:Unknown line) org.hsqldb.persist.TextCache.readObject(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.persist.TextCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.TextTable.connect(:Unknown line) org.hsqldb.TextTable.openCache(:Unknown line) org.hsqldb.TextTable.setDataSource(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.processSet(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.executePart(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.execute(:Unknown line) org.hsqldb.Session.sqlExecuteDirectNoPreChecks(:Unknown line) org.hsqldb.scriptio.ScriptReaderText.readDDL(:Unknown line) org.hsqldb.scriptio.ScriptReaderBase.readAll(:Unknown line) org.hsqldb.persist.Log.processScript(:Unknown line) org.hsqldb.persist.Log.open(:Unknown line) org.hsqldb.persist.Logger.openLog(:Unknown line) org.hsqldb.Database.reopen(:Unknown line) TRACE 305709: org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.testCondition(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 300614: java.io.WinNTFileSystem.getBooleanAttributes(WinNTFileSystem.java:Unknown line) java.io.File.exists(File.java:733) sun.misc.URLClassPath$FileLoader.getResource(URLClassPath.java:995) sun.misc.URLClassPath$FileLoader.findResource(URLClassPath.java:962) sun.misc.URLClassPath.findResource(URLClassPath.java:145) java.net.URLClassLoader$2.run(URLClassLoader.java:362) java.security.AccessController.doPrivileged(AccessController.java:Unknown line) java.net.URLClassLoader.findResource(URLClassLoader.java:359) java.lang.ClassLoader.getResource(ClassLoader.java:958) java.lang.ClassLoader.getResourceAsStream(ClassLoader.java:1148) java.lang.Class.getResourceAsStream(Class.java:2030) org.apache.tools.ant.taskdefs.Manifest.getDefaultManifest(Manifest.java:740) org.apache.tools.ant.taskdefs.Jar.createManifest(Jar.java:439) org.apache.tools.ant.taskdefs.Jar.getResourcesToAdd(Jar.java:717) org.apache.tools.ant.taskdefs.Zip.executeMain(Zip.java:463) org.apache.tools.ant.taskdefs.Zip.execute(Zip.java:416) org.kepler.build.MakeKars.makeKars(MakeKars.java:207) org.kepler.build.MakeKars.karSuite(MakeKars.java:97) org.kepler.build.MakeKars.run(MakeKars.java:74) org.kepler.Kepler.main(Kepler.java:154) TRACE 305694: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecordingV7.regParameter(SQLRecordingV7.java:161) org.kepler.provenance.sql.SQLRecordingV8.regParameter(SQLRecordingV8.java:519) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1684) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1363) ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:940) ptolemy.actor.Manager.initialize(Manager.java:608) TRACE 301778: java.net.PlainSocketImpl.socketConnect(PlainSocketImpl.java:Unknown line) java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333) java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195) java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182) java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366) java.net.Socket.connect(Socket.java:525) java.net.Socket.connect(Socket.java:475) java.net.Socket.(Socket.java:372) java.net.Socket.(Socket.java:186) org.hsqldb.HsqlSocketFactory.createSocket(:Unknown line) org.hsqldb.HSQLClientConnection.openConnection(:Unknown line) org.hsqldb.HSQLClientConnection.initConnection(:Unknown line) org.hsqldb.HSQLClientConnection.(:Unknown line) org.hsqldb.jdbc.jdbcConnection.(:Unknown line) org.hsqldb.jdbcDriver.getConnection(:Unknown line) org.hsqldb.jdbcDriver.connect(:Unknown line) java.sql.DriverManager.getConnection(DriverManager.java:582) java.sql.DriverManager.getConnection(DriverManager.java:185) org.kepler.util.sql.HSQL._getConnection(HSQL.java:273) org.kepler.util.sql.DatabaseFactory.getDBConnection(DatabaseFactory.java:124) TRACE 305722: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getLeft(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305691: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getRight(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 301953: java.io.RandomAccessFile.length(RandomAccessFile.java:Unknown line) org.hsqldb.persist.ScaledRAFile.seek(:Unknown line) org.hsqldb.persist.TextCache.readObject(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.persist.TextCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.TextTable.connect(:Unknown line) org.hsqldb.TextTable.openCache(:Unknown line) org.hsqldb.TextTable.setDataSource(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.processSet(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.executePart(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.execute(:Unknown line) org.hsqldb.Session.sqlExecuteDirectNoPreChecks(:Unknown line) org.hsqldb.scriptio.ScriptReaderText.readDDL(:Unknown line) org.hsqldb.scriptio.ScriptReaderBase.readAll(:Unknown line) org.hsqldb.persist.Log.processScript(:Unknown line) org.hsqldb.persist.Log.open(:Unknown line) org.hsqldb.persist.Logger.openLog(:Unknown line) org.hsqldb.Database.reopen(:Unknown line) org.hsqldb.Database.open(:Unknown line) TRACE 304641: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcStatement.fetchResult(:Unknown line) org.hsqldb.jdbc.jdbcStatement.execute(:Unknown line) org.kepler.util.sql.HSQL._getConnection(HSQL.java:326) org.kepler.util.sql.DatabaseFactory.getDBConnection(DatabaseFactory.java:124) org.ecoinformatics.seek.dataquery.DBTableExistenceChecker.isGivenStringExisted(DBTableExistenceChecker.java:110) org.ecoinformatics.seek.dataquery.DBTableExistenceChecker.isURLExisted(DBTableExistenceChecker.java:77) org.ecoinformatics.seek.dataquery.DBTableNameResolver.resolveTableName(DBTableNameResolver.java:81) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.createSchemaFromData(Eml200DataSource.java:1189) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.complete(Eml200DataSource.java:1485) org.kepler.objectmanager.cache.DataCacheObject.notifyOne(DataCacheObject.java:327) org.kepler.objectmanager.cache.DataCacheObject.addListener(DataCacheObject.java:279) org.kepler.objectmanager.cache.DataCacheManager.getCacheItemInternal(DataCacheManager.java:204) TRACE 305743: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecording._regActorDirector(SQLRecording.java:1520) org.kepler.provenance.sql.SQLRecording.regActor(SQLRecording.java:140) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1597) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1363) ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:940) ptolemy.actor.Manager.initialize(Manager.java:608) TRACE 305773: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecording.regPort(SQLRecording.java:314) org.kepler.provenance.sql.SQLRecordingV8.regPort(SQLRecordingV8.java:268) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1622) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) TRACE 305695: org.hsqldb.Expression.compareValues(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.testCondition(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305725: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getParent(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305721: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getRight(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 301955: java.io.RandomAccessFile.length(RandomAccessFile.java:Unknown line) org.hsqldb.persist.ScaledRAFile.read(:Unknown line) org.hsqldb.persist.TextCache.findNextUsedLinePos(:Unknown line) org.hsqldb.persist.TextCache.readObject(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.persist.TextCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.TextTable.connect(:Unknown line) org.hsqldb.TextTable.openCache(:Unknown line) org.hsqldb.TextTable.setDataSource(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.processSet(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.executePart(:Unknown line) org.hsqldb.DatabaseCommandInterpreter.execute(:Unknown line) org.hsqldb.Session.sqlExecuteDirectNoPreChecks(:Unknown line) org.hsqldb.scriptio.ScriptReaderText.readDDL(:Unknown line) org.hsqldb.scriptio.ScriptReaderBase.readAll(:Unknown line) org.hsqldb.persist.Log.processScript(:Unknown line) org.hsqldb.persist.Log.open(:Unknown line) org.hsqldb.persist.Logger.openLog(:Unknown line) org.hsqldb.Database.reopen(:Unknown line) TRACE 305705: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getParent(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305718: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getLeft(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305760: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecording._regActorDirector(SQLRecording.java:1520) org.kepler.provenance.sql.SQLRecording.regActor(SQLRecording.java:140) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1597) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1363) ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:940) TRACE 305775: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecordingV7.regParameter(SQLRecordingV7.java:161) org.kepler.provenance.sql.SQLRecordingV8.regParameter(SQLRecordingV8.java:519) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1684) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) TRACE 305965: java.io.FileOutputStream.writeBytes(FileOutputStream.java:Unknown line) java.io.FileOutputStream.write(FileOutputStream.java:260) java.io.BufferedOutputStream.write(BufferedOutputStream.java:105) sun.nio.cs.StreamEncoder.writeBytes(StreamEncoder.java:202) sun.nio.cs.StreamEncoder.implWrite(StreamEncoder.java:263) sun.nio.cs.StreamEncoder.write(StreamEncoder.java:106) java.io.OutputStreamWriter.write(OutputStreamWriter.java:190) java.io.BufferedWriter.flushBuffer(BufferedWriter.java:111) java.io.BufferedWriter.flush(BufferedWriter.java:235) org.ecoinformatics.seek.R.RExpression.fire(RExpression.java:902) ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469) ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188) ptolemy.actor.CompositeActor.fire(CompositeActor.java:458) ptolemy.actor.Manager.iterate(Manager.java:714) ptolemy.actor.Manager.execute(Manager.java:349) ptolemy.actor.Manager.run(Manager.java:1119) ptolemy.actor.Manager$3.run(Manager.java:1160) TRACE 305690: org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.testCondition(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305749: org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305454: org.apache.batik.dom.svg.SVGDOMImplementation.createCSSEngine(:Unknown line) org.apache.batik.dom.ExtensibleDOMImplementation.createCSSEngine(:Unknown line) org.apache.batik.bridge.BridgeContext.initializeDocument(:Unknown line) org.apache.batik.bridge.GVTBuilder.build(:Unknown line) org.apache.batik.swing.svg.GVTTreeBuilder.run(:Unknown line) TRACE 302271: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcStatement.fetchResult(:Unknown line) org.hsqldb.jdbc.jdbcStatement.executeQuery(:Unknown line) org.kepler.objectmanager.library.LibItem.populateAttributes(LibItem.java:193) org.kepler.objectmanager.library.LibItem.populate(LibItem.java:175) org.kepler.objectmanager.library.LibIndex.getItemsOfType(LibIndex.java:824) org.kepler.objectmanager.library.LibIndex.getItems(LibIndex.java:763) org.kepler.objectmanager.library.LibraryGenerator.generate(LibraryGenerator.java:87) org.kepler.objectmanager.library.LibraryManager.buildLibrary(LibraryManager.java:363) org.kepler.moml.KARLibraryBuilder.buildLibrary(KARLibraryBuilder.java:78) ptolemy.actor.gui.UserActorLibrary.openLibrary(UserActorLibrary.java:202) ptolemy.actor.gui.UserActorLibrary.openUserLibrary(UserActorLibrary.java:140) ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:330) TRACE 302000: java.util.zip.Deflater.deflateBytes(Deflater.java:Unknown line) java.util.zip.Deflater.deflate(Deflater.java:290) java.util.zip.DeflaterOutputStream.deflate(DeflaterOutputStream.java:159) java.util.zip.DeflaterOutputStream.write(DeflaterOutputStream.java:118) org.hsqldb.lib.ZipUnzipFile.compressFile(:Unknown line) org.hsqldb.persist.Log.backupData(:Unknown line) org.hsqldb.persist.Log.close(:Unknown line) org.hsqldb.persist.Log.open(:Unknown line) org.hsqldb.persist.Logger.openLog(:Unknown line) org.hsqldb.Database.reopen(:Unknown line) org.hsqldb.Database.open(:Unknown line) org.hsqldb.DatabaseManager.getDatabase(:Unknown line) org.hsqldb.DatabaseManager.getDatabase(:Unknown line) org.hsqldb.Server.openDatabases(:Unknown line) org.hsqldb.Server.run(:Unknown line) org.hsqldb.Server.access$000(:Unknown line) org.hsqldb.Server$ServerThread.run(:Unknown line) TRACE 303268: org.hsqldb.lib.HsqlTimer$TaskQueue.park(:Unknown line) org.hsqldb.lib.HsqlTimer.nextTask(:Unknown line) org.hsqldb.lib.HsqlTimer$TaskRunner.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 302251: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcStatement.fetchResult(:Unknown line) org.hsqldb.jdbc.jdbcStatement.executeQuery(:Unknown line) org.kepler.objectmanager.library.LibItem.populate(LibItem.java:135) org.kepler.objectmanager.library.LibIndex.getItemsOfType(LibIndex.java:824) org.kepler.objectmanager.library.LibIndex.getItems(LibIndex.java:763) org.kepler.objectmanager.library.LibraryGenerator.generate(LibraryGenerator.java:87) org.kepler.objectmanager.library.LibraryManager.buildLibrary(LibraryManager.java:363) org.kepler.moml.KARLibraryBuilder.buildLibrary(KARLibraryBuilder.java:78) ptolemy.actor.gui.UserActorLibrary.openLibrary(UserActorLibrary.java:202) ptolemy.actor.gui.UserActorLibrary.openUserLibrary(UserActorLibrary.java:140) ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:330) ptolemy.vergil.VergilApplication._createEmptyConfiguration(VergilApplication.java:347) TRACE 305688: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecordingV7.regParameter(SQLRecordingV7.java:161) org.kepler.provenance.sql.SQLRecordingV8.regParameter(SQLRecordingV8.java:519) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1684) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1363) ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:940) ptolemy.actor.Manager.initialize(Manager.java:608) ptolemy.actor.Manager.execute(Manager.java:338) TRACE 305720: org.hsqldb.Expression.compareValues(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.testCondition(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305693: org.hsqldb.store.BaseHashMap.getLookup(:Unknown line) org.hsqldb.store.ObjectCacheHashMap.get(:Unknown line) org.hsqldb.persist.Cache.get(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getRight(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) TRACE 305711: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getLeft(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 302328: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcStatement.fetchResult(:Unknown line) org.hsqldb.jdbc.jdbcStatement.executeQuery(:Unknown line) org.kepler.objectmanager.library.LibItem.populateLsids(LibItem.java:220) org.kepler.objectmanager.library.LibItem.populate(LibItem.java:176) org.kepler.objectmanager.library.LibIndex.getItemsOfType(LibIndex.java:824) org.kepler.objectmanager.library.LibIndex.getItems(LibIndex.java:763) org.kepler.objectmanager.library.LibraryGenerator.generate(LibraryGenerator.java:87) org.kepler.objectmanager.library.LibraryManager.buildLibrary(LibraryManager.java:363) org.kepler.moml.KARLibraryBuilder.buildLibrary(KARLibraryBuilder.java:78) ptolemy.actor.gui.UserActorLibrary.openLibrary(UserActorLibrary.java:202) ptolemy.actor.gui.UserActorLibrary.openUserLibrary(UserActorLibrary.java:140) ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:330) TRACE 305704: org.hsqldb.store.BaseHashMap.getLookup(:Unknown line) org.hsqldb.store.ObjectCacheHashMap.get(:Unknown line) org.hsqldb.persist.Cache.get(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getRight(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) TRACE 305772: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecording._regActorDirector(SQLRecording.java:1520) org.kepler.provenance.sql.SQLRecording.regActor(SQLRecording.java:140) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1597) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1363) TRACE 306145: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLQueryV8.getEntityId(SQLQueryV8.java:1642) org.kepler.reporting.rio.DynamicReportItem.generateValues(DynamicReportItem.java:220) org.kepler.reporting.rio.ReportAssembler.populateReport(ReportAssembler.java:88) org.kepler.reporting.rio.ReportAssembler.populateReportWithLatest(ReportAssembler.java:68) org.kepler.module.reporting.ReportingListener.writeFiles(ReportingListener.java:142) org.kepler.module.reporting.ReportingListener.wrapup(ReportingListener.java:247) org.kepler.provenance.ProvenanceRecorder.wrapup(ProvenanceRecorder.java:572) ptolemy.actor.CompositeActor.wrapup(CompositeActor.java:1930) ptolemy.actor.Manager.wrapup(Manager.java:1324) ptolemy.actor.Manager.execute(Manager.java:382) ptolemy.actor.Manager.run(Manager.java:1119) TRACE 305942: java.io.WinNTFileSystem.getBooleanAttributes(WinNTFileSystem.java:Unknown line) java.io.File.isDirectory(File.java:754) org.ecoinformatics.seek.R.RExpression._findFile(RExpression.java:1477) org.ecoinformatics.seek.R.RExpression._findFile(RExpression.java:1483) org.ecoinformatics.seek.R.RExpression._findFile(RExpression.java:1483) org.ecoinformatics.seek.R.RExpression._checkRLocation(RExpression.java:1397) org.ecoinformatics.seek.R.RExpression._exec(RExpression.java:1339) org.ecoinformatics.seek.R.RExpression.fire(RExpression.java:887) ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469) ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188) ptolemy.actor.CompositeActor.fire(CompositeActor.java:458) ptolemy.actor.Manager.iterate(Manager.java:714) ptolemy.actor.Manager.execute(Manager.java:349) ptolemy.actor.Manager.run(Manager.java:1119) ptolemy.actor.Manager$3.run(Manager.java:1160) TRACE 305702: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getRight(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305703: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getParent(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305708: org.hsqldb.store.BaseHashMap.getLookup(:Unknown line) org.hsqldb.store.ObjectCacheHashMap.get(:Unknown line) org.hsqldb.persist.Cache.get(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getParent(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) TRACE 305712: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getLeft(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305696: org.hsqldb.store.BaseHashMap.getLookup(:Unknown line) org.hsqldb.store.ObjectCacheHashMap.get(:Unknown line) org.hsqldb.persist.Cache.get(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getParent(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) TRACE 305724: org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.testCondition(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305742: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecording.regPort(SQLRecording.java:314) org.kepler.provenance.sql.SQLRecordingV8.regPort(SQLRecordingV8.java:268) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1622) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1363) ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:940) ptolemy.actor.Manager.initialize(Manager.java:608) TRACE 305706: org.hsqldb.store.BaseHashMap.getLookup(:Unknown line) org.hsqldb.store.ObjectCacheHashMap.get(:Unknown line) org.hsqldb.persist.Cache.get(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getRight(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) TRACE 304655: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcStatement.fetchResult(:Unknown line) org.hsqldb.jdbc.jdbcStatement.execute(:Unknown line) org.kepler.util.sql.HSQL._getConnection(HSQL.java:326) org.kepler.util.sql.DatabaseFactory.getDBConnection(DatabaseFactory.java:124) org.ecoinformatics.seek.dataquery.DBTableExistenceChecker.isGivenStringExisted(DBTableExistenceChecker.java:110) org.ecoinformatics.seek.dataquery.DBTableExistenceChecker.isURLExisted(DBTableExistenceChecker.java:77) org.ecoinformatics.seek.dataquery.DBTablesGenerator.generateDBTextTable(DBTablesGenerator.java:392) org.ecoinformatics.seek.dataquery.DBTablesGenerator.generateTables(DBTablesGenerator.java:239) org.ecoinformatics.seek.dataquery.DBTablesGenerator.run(DBTablesGenerator.java:205) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.createSchemaFromData(Eml200DataSource.java:1205) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.complete(Eml200DataSource.java:1485) org.kepler.objectmanager.cache.DataCacheObject.notifyOne(DataCacheObject.java:327) TRACE 305716: org.hsqldb.store.BaseHashMap.getLookup(:Unknown line) org.hsqldb.store.ObjectCacheHashMap.get(:Unknown line) org.hsqldb.persist.Cache.get(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getLeft(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) TRACE 305251: java.io.WinNTFileSystem.getBooleanAttributes(WinNTFileSystem.java:Unknown line) java.io.File.exists(File.java:733) sun.misc.URLClassPath$FileLoader.getResource(URLClassPath.java:995) sun.misc.URLClassPath$FileLoader.findResource(URLClassPath.java:962) sun.misc.URLClassPath.findResource(URLClassPath.java:145) java.net.URLClassLoader$2.run(URLClassLoader.java:362) java.security.AccessController.doPrivileged(AccessController.java:Unknown line) java.net.URLClassLoader.findResource(URLClassLoader.java:359) java.lang.ClassLoader.getResource(ClassLoader.java:958) java.lang.ClassLoader.getResourceAsStream(ClassLoader.java:1148) org.apache.xml.dtm.SecuritySupport12$6.run(SecuritySupport12.java:119) java.security.AccessController.doPrivileged(AccessController.java:Unknown line) org.apache.xml.dtm.SecuritySupport12.getResourceAsStream(SecuritySupport12.java:112) org.apache.xml.dtm.ObjectFactory.findJarServiceProviderName(ObjectFactory.java:542) org.apache.xml.dtm.ObjectFactory.lookUpFactoryClassName(ObjectFactory.java:373) org.apache.xml.dtm.ObjectFactory.lookUpFactoryClass(ObjectFactory.java:206) org.apache.xml.dtm.ObjectFactory.createObject(ObjectFactory.java:131) org.apache.xml.dtm.ObjectFactory.createObject(ObjectFactory.java:101) org.apache.xml.dtm.DTMManager.newInstance(DTMManager.java:135) org.apache.xpath.XPathContext.(XPathContext.java:100) TRACE 303638: java.io.FileOutputStream.close0(FileOutputStream.java:Unknown line) java.io.FileOutputStream.close(FileOutputStream.java:279) org.hsqldb.lib.ZipUnzipFile.decompressFile(:Unknown line) org.hsqldb.persist.Log.restoreBackup(:Unknown line) org.hsqldb.persist.Log.open(:Unknown line) org.hsqldb.persist.Logger.openLog(:Unknown line) org.hsqldb.Database.reopen(:Unknown line) org.hsqldb.Database.open(:Unknown line) org.hsqldb.DatabaseManager.getDatabase(:Unknown line) org.hsqldb.DatabaseManager.getDatabase(:Unknown line) org.hsqldb.Server.openDatabases(:Unknown line) org.hsqldb.Server.run(:Unknown line) org.hsqldb.Server.access$000(:Unknown line) org.hsqldb.Server$ServerThread.run(:Unknown line) TRACE 305710: org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 303654: java.lang.Object.wait(Object.java:Unknown line) org.hsqldb.lib.HsqlTimer$TaskQueue.park(:Unknown line) org.hsqldb.lib.HsqlTimer.nextTask(:Unknown line) org.hsqldb.lib.HsqlTimer$TaskRunner.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 304658: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcStatement.fetchResult(:Unknown line) org.hsqldb.jdbc.jdbcStatement.execute(:Unknown line) org.kepler.util.sql.HSQL._getConnection(HSQL.java:326) org.kepler.util.sql.DatabaseFactory.getDBConnection(DatabaseFactory.java:124) org.ecoinformatics.seek.dataquery.DBTableExistenceChecker.getTableName(DBTableExistenceChecker.java:208) org.ecoinformatics.seek.dataquery.DBTableNameResolver.resolveTableName(DBTableNameResolver.java:83) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.createSchemaFromData(Eml200DataSource.java:1189) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.complete(Eml200DataSource.java:1485) org.kepler.objectmanager.cache.DataCacheObject.notifyOne(DataCacheObject.java:327) org.kepler.objectmanager.cache.DataCacheObject.addListener(DataCacheObject.java:279) org.kepler.objectmanager.cache.DataCacheManager.getCacheItemInternal(DataCacheManager.java:204) org.kepler.objectmanager.cache.DataCacheManager.getCacheItem(DataCacheManager.java:169) TRACE 305723: org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.testCondition(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305707: org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getParent(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 301892: java.util.zip.Inflater.inflateBytes(Inflater.java:Unknown line) java.util.zip.Inflater.inflate(Inflater.java:223) java.util.zip.InflaterInputStream.read(InflaterInputStream.java:135) org.hsqldb.lib.ZipUnzipFile.decompressFile(:Unknown line) org.hsqldb.persist.Log.restoreBackup(:Unknown line) org.hsqldb.persist.Log.open(:Unknown line) org.hsqldb.persist.Logger.openLog(:Unknown line) org.hsqldb.Database.reopen(:Unknown line) org.hsqldb.Database.open(:Unknown line) org.hsqldb.DatabaseManager.getDatabase(:Unknown line) org.hsqldb.DatabaseManager.getDatabase(:Unknown line) org.hsqldb.Server.openDatabases(:Unknown line) org.hsqldb.Server.run(:Unknown line) org.hsqldb.Server.access$000(:Unknown line) org.hsqldb.Server$ServerThread.run(:Unknown line) TRACE 300219: java.lang.ClassLoader.defineClass1(ClassLoader.java:Unknown line) java.lang.ClassLoader.defineClass(ClassLoader.java:616) java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124) java.net.URLClassLoader.defineClass(URLClassLoader.java:260) java.net.URLClassLoader.access$000(URLClassLoader.java:56) java.net.URLClassLoader$1.run(URLClassLoader.java:195) java.security.AccessController.doPrivileged(AccessController.java:Unknown line) java.net.URLClassLoader.findClass(URLClassLoader.java:188) java.lang.ClassLoader.loadClass(ClassLoader.java:303) sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301) java.lang.ClassLoader.loadClass(ClassLoader.java:248) java.lang.ClassLoader.loadClassInternal(ClassLoader.java:316) java.lang.ClassLoader.defineClass1(ClassLoader.java:Unknown line) java.lang.ClassLoader.defineClass(ClassLoader.java:616) java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124) java.net.URLClassLoader.defineClass(URLClassLoader.java:260) java.net.URLClassLoader.access$000(URLClassLoader.java:56) java.net.URLClassLoader$1.run(URLClassLoader.java:195) java.security.AccessController.doPrivileged(AccessController.java:Unknown line) java.net.URLClassLoader.findClass(URLClassLoader.java:188) TRACE 303262: java.io.WinNTFileSystem.getBooleanAttributes(WinNTFileSystem.java:Unknown line) java.io.File.exists(File.java:733) sun.misc.URLClassPath$FileLoader.getResource(URLClassPath.java:995) sun.misc.URLClassPath.getResource(URLClassPath.java:168) java.net.URLClassLoader$1.run(URLClassLoader.java:192) java.security.AccessController.doPrivileged(AccessController.java:Unknown line) java.net.URLClassLoader.findClass(URLClassLoader.java:188) java.lang.ClassLoader.loadClass(ClassLoader.java:303) sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301) java.lang.ClassLoader.loadClass(ClassLoader.java:248) java.lang.ClassLoader.loadClassInternal(ClassLoader.java:316) org.semanticweb.owl.apibinding.OWLManager.createOWLOntologyManager(OWLManager.java:74) org.kepler.sms.OntologyCatalog.(OntologyCatalog.java:71) org.kepler.gui.ComponentLibraryTab.initOntSelectBox(ComponentLibraryTab.java:235) org.kepler.gui.ComponentLibraryTab.initializeTab(ComponentLibraryTab.java:176) org.kepler.gui.TabPaneFactory.createTabPaneTabs(TabPaneFactory.java:110) org.kepler.gui.TabManager.initializeTabs(TabManager.java:80) org.kepler.gui.KeplerGraphFrame._initBasicGraphFrame(KeplerGraphFrame.java:362) ptolemy.vergil.basic.BasicGraphFrame.(BasicGraphFrame.java:223) ptolemy.vergil.basic.ExtendedGraphFrame.(ExtendedGraphFrame.java:95) TRACE 304651: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcStatement.fetchResult(:Unknown line) org.hsqldb.jdbc.jdbcStatement.execute(:Unknown line) org.kepler.util.sql.HSQL._getConnection(HSQL.java:326) org.kepler.util.sql.DatabaseFactory.getDBConnection(DatabaseFactory.java:124) org.ecoinformatics.seek.dataquery.DBTablesGenerator.excuteSQLCommand(DBTablesGenerator.java:558) org.ecoinformatics.seek.dataquery.DBTablesGenerator.cleanUpRecord(DBTablesGenerator.java:529) org.ecoinformatics.seek.dataquery.DBTablesGenerator.generateDBTextTable(DBTablesGenerator.java:511) org.ecoinformatics.seek.dataquery.DBTablesGenerator.generateTables(DBTablesGenerator.java:239) org.ecoinformatics.seek.dataquery.DBTablesGenerator.run(DBTablesGenerator.java:205) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.createSchemaFromData(Eml200DataSource.java:1205) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.complete(Eml200DataSource.java:1485) org.kepler.objectmanager.cache.DataCacheObject.notifyOne(DataCacheObject.java:327) TRACE 303328: java.io.WinNTFileSystem.getBooleanAttributes(WinNTFileSystem.java:Unknown line) java.io.File.exists(File.java:733) sun.misc.URLClassPath$FileLoader.getResource(URLClassPath.java:995) sun.misc.URLClassPath.getResource(URLClassPath.java:168) java.net.URLClassLoader$1.run(URLClassLoader.java:192) java.security.AccessController.doPrivileged(AccessController.java:Unknown line) java.net.URLClassLoader.findClass(URLClassLoader.java:188) java.lang.ClassLoader.loadClass(ClassLoader.java:303) sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301) java.lang.ClassLoader.loadClass(ClassLoader.java:248) java.lang.ClassLoader.loadClassInternal(ClassLoader.java:316) org.coode.owl.rdfxml.parser.RDFXMLParser.parse(RDFXMLParser.java:74) uk.ac.manchester.cs.owl.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:154) uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:380) uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:349) org.kepler.sms.NamedOntModel.initialize(NamedOntModel.java:168) org.kepler.sms.OntologyCatalog.initialize(OntologyCatalog.java:475) org.kepler.sms.OntologyCatalog.initialize(OntologyCatalog.java:450) org.kepler.sms.OntologyCatalog.(OntologyCatalog.java:101) org.kepler.sms.OntologyCatalog.instance(OntologyCatalog.java:119) TRACE 301985: java.io.FileDescriptor.sync(FileDescriptor.java:Unknown line) org.hsqldb.lib.FileUtil$FileSync.sync(:Unknown line) org.hsqldb.scriptio.ScriptWriterBase.close(:Unknown line) org.hsqldb.persist.Log.writeScript(:Unknown line) org.hsqldb.persist.Log.close(:Unknown line) org.hsqldb.persist.Log.open(:Unknown line) org.hsqldb.persist.Logger.openLog(:Unknown line) org.hsqldb.Database.reopen(:Unknown line) org.hsqldb.Database.open(:Unknown line) org.hsqldb.DatabaseManager.getDatabase(:Unknown line) org.hsqldb.DatabaseManager.getDatabase(:Unknown line) org.hsqldb.Server.openDatabases(:Unknown line) org.hsqldb.Server.run(:Unknown line) org.hsqldb.Server.access$000(:Unknown line) org.hsqldb.Server$ServerThread.run(:Unknown line) TRACE 305735: org.hsqldb.store.BaseHashMap.getLookup(:Unknown line) org.hsqldb.store.ObjectCacheHashMap.get(:Unknown line) org.hsqldb.persist.Cache.get(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getRight(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) TRACE 305770: org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.testCondition(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305759: org.hsqldb.store.BaseHashMap.getLookup(:Unknown line) org.hsqldb.store.ObjectCacheHashMap.get(:Unknown line) org.hsqldb.persist.Cache.get(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getParent(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) TRACE 305767: org.hsqldb.store.BaseHashMap.getLookup(:Unknown line) org.hsqldb.store.ObjectCacheHashMap.get(:Unknown line) org.hsqldb.persist.Cache.get(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getParent(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) TRACE 304656: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcStatement.fetchResult(:Unknown line) org.hsqldb.jdbc.jdbcStatement.execute(:Unknown line) org.kepler.util.sql.HSQL._getConnection(HSQL.java:326) org.kepler.util.sql.DatabaseFactory.getDBConnection(DatabaseFactory.java:124) org.ecoinformatics.seek.dataquery.DBTableExistenceChecker.getTableName(DBTableExistenceChecker.java:208) org.ecoinformatics.seek.dataquery.DBTablesGenerator.generateDBTextTable(DBTablesGenerator.java:394) org.ecoinformatics.seek.dataquery.DBTablesGenerator.generateTables(DBTablesGenerator.java:239) org.ecoinformatics.seek.dataquery.DBTablesGenerator.run(DBTablesGenerator.java:205) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.createSchemaFromData(Eml200DataSource.java:1205) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.complete(Eml200DataSource.java:1485) org.kepler.objectmanager.cache.DataCacheObject.notifyOne(DataCacheObject.java:327) org.kepler.objectmanager.cache.DataCacheObject.addListener(DataCacheObject.java:279) TRACE 303633: org.hsqldb.lib.HsqlTimer.nextTask(:Unknown line) org.hsqldb.lib.HsqlTimer$TaskRunner.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305757: org.hsqldb.Expression.compareValues(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.test(:Unknown line) org.hsqldb.Expression.testCondition(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 304650: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcStatement.fetchResult(:Unknown line) org.hsqldb.jdbc.jdbcStatement.execute(:Unknown line) org.kepler.util.sql.HSQL._getConnection(HSQL.java:326) org.kepler.util.sql.DatabaseFactory.getDBConnection(DatabaseFactory.java:124) org.ecoinformatics.seek.dataquery.DBTablesGenerator.excuteSQLCommand(DBTablesGenerator.java:558) org.ecoinformatics.seek.dataquery.DBTablesGenerator.generateDBTextTable(DBTablesGenerator.java:489) org.ecoinformatics.seek.dataquery.DBTablesGenerator.generateTables(DBTablesGenerator.java:239) org.ecoinformatics.seek.dataquery.DBTablesGenerator.run(DBTablesGenerator.java:205) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.createSchemaFromData(Eml200DataSource.java:1205) org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.complete(Eml200DataSource.java:1485) org.kepler.objectmanager.cache.DataCacheObject.notifyOne(DataCacheObject.java:327) org.kepler.objectmanager.cache.DataCacheObject.addListener(DataCacheObject.java:279) TRACE 305714: org.hsqldb.store.BaseHashMap.getLookup(:Unknown line) org.hsqldb.store.ObjectCacheHashMap.get(:Unknown line) org.hsqldb.persist.Cache.get(:Unknown line) org.hsqldb.persist.DataFileCache.get(:Unknown line) org.hsqldb.Table$RowStore.get(:Unknown line) org.hsqldb.Table.getRow(:Unknown line) org.hsqldb.DiskNode.findNode(:Unknown line) org.hsqldb.DiskNode.getLeft(:Unknown line) org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.next(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) TRACE 305768: org.hsqldb.Index.next(:Unknown line) org.hsqldb.Index$IndexRowIterator.next(:Unknown line) org.hsqldb.TableFilter.findFirst(:Unknown line) org.hsqldb.Select.buildResult(:Unknown line) org.hsqldb.Select.getSingleResult(:Unknown line) org.hsqldb.Select.getResult(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeSelectStatement(:Unknown line) org.hsqldb.CompiledStatementExecutor.executeImpl(:Unknown line) org.hsqldb.CompiledStatementExecutor.execute(:Unknown line) org.hsqldb.Session.sqlExecuteCompiledNoPreChecks(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.sqlExecute(:Unknown line) org.hsqldb.Session.execute(:Unknown line) org.hsqldb.ServerConnection.run(:Unknown line) java.lang.Thread.run(Thread.java:619) TRACE 305776: java.net.SocketInputStream.socketRead0(SocketInputStream.java:Unknown line) java.net.SocketInputStream.read(SocketInputStream.java:129) java.io.BufferedInputStream.fill(BufferedInputStream.java:218) java.io.BufferedInputStream.read(BufferedInputStream.java:237) java.io.DataInputStream.readInt(DataInputStream.java:370) org.hsqldb.Result.read(:Unknown line) org.hsqldb.HSQLClientConnection.read(:Unknown line) org.hsqldb.HSQLClientConnection.execute(:Unknown line) org.hsqldb.jdbc.jdbcPreparedStatement.executeQuery(:Unknown line) org.kepler.provenance.sql.SQLRecording._checkEntity(SQLRecording.java:1361) org.kepler.provenance.sql.SQLRecordingV7.regParameter(SQLRecordingV7.java:156) org.kepler.provenance.sql.SQLRecordingV8.regParameter(SQLRecordingV8.java:519) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1684) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder.recordContainerContents(ProvenanceRecorder.java:1778) org.kepler.provenance.ProvenanceRecorder._recordWorkflowContents(ProvenanceRecorder.java:2051) org.kepler.provenance.ProvenanceRecorder.preinitialize(ProvenanceRecorder.java:452) CPU SAMPLES BEGIN (total = 141111) Thu Feb 11 11:38:09 2010 rank self accum count trace method 1 55.37% 55.37% 78137 302036 java.net.SocketInputStream.socketRead0 2 19.87% 75.25% 28044 302008 java.net.PlainSocketImpl.socketAccept 3 8.98% 84.23% 12671 300983 sun.awt.windows.WToolkit.eventLoop 4 2.73% 86.96% 3854 305916 java.io.FileInputStream.readBytes 5 1.60% 88.55% 2253 305919 java.lang.ProcessImpl.waitFor 6 1.49% 90.04% 2100 301943 java.io.RandomAccessFile.length 7 1.40% 91.44% 1978 306041 java.net.PlainSocketImpl.socketAccept 8 1.16% 92.60% 1636 305917 java.io.FileInputStream.readBytes 9 1.11% 93.71% 1569 305918 java.io.FileOutputStream.writeBytes 10 0.37% 94.09% 528 302025 java.io.FileDescriptor.sync 11 0.31% 94.40% 439 301921 java.nio.MappedByteBuffer.force0 12 0.25% 94.65% 358 305745 java.net.SocketInputStream.socketRead0 13 0.18% 94.84% 256 305744 java.net.SocketInputStream.socketRead0 14 0.16% 94.99% 220 302016 java.io.FileDescriptor.sync 15 0.14% 95.14% 204 305750 java.net.SocketInputStream.socketRead0 16 0.14% 95.27% 192 305717 org.hsqldb.Table$RowStore.get 17 0.13% 95.41% 189 305761 java.net.SocketInputStream.socketRead0 18 0.13% 95.53% 180 302725 java.net.PlainSocketImpl.socketConnect 19 0.12% 95.66% 172 305764 java.net.SocketInputStream.socketRead0 20 0.09% 95.75% 127 305715 org.hsqldb.Expression.compareValues 21 0.08% 95.82% 109 300255 java.io.WinNTFileSystem.getBooleanAttributes 22 0.07% 95.89% 99 301950 java.io.RandomAccessFile.length 23 0.07% 95.96% 99 305709 org.hsqldb.Expression.test 24 0.07% 96.03% 92 300614 java.io.WinNTFileSystem.getBooleanAttributes 25 0.06% 96.09% 89 305694 java.net.SocketInputStream.socketRead0 26 0.06% 96.15% 85 301778 java.net.PlainSocketImpl.socketConnect 27 0.06% 96.21% 85 305722 org.hsqldb.Table$RowStore.get 28 0.05% 96.26% 73 305691 org.hsqldb.Table$RowStore.get 29 0.05% 96.31% 72 301953 java.io.RandomAccessFile.length 30 0.05% 96.36% 70 304641 java.net.SocketInputStream.socketRead0 31 0.05% 96.41% 69 305743 java.net.SocketInputStream.socketRead0 32 0.05% 96.46% 69 305773 java.net.SocketInputStream.socketRead0 33 0.05% 96.51% 68 305695 org.hsqldb.Expression.compareValues 34 0.05% 96.56% 66 305725 org.hsqldb.Table$RowStore.get 35 0.05% 96.60% 64 305721 org.hsqldb.Table$RowStore.get 36 0.04% 96.65% 61 301955 java.io.RandomAccessFile.length 37 0.04% 96.69% 59 305705 org.hsqldb.Table$RowStore.get 38 0.04% 96.73% 57 305718 org.hsqldb.Table$RowStore.get 39 0.04% 96.77% 56 305760 java.net.SocketInputStream.socketRead0 40 0.04% 96.81% 56 305775 java.net.SocketInputStream.socketRead0 41 0.04% 96.85% 54 305965 java.io.FileOutputStream.writeBytes 42 0.04% 96.88% 54 305690 org.hsqldb.Expression.test 43 0.04% 96.92% 51 305749 org.hsqldb.Index$IndexRowIterator.next 44 0.04% 96.95% 50 305454 org.apache.batik.dom.svg.SVGDOMImplementation.createCSSEngine 45 0.04% 96.99% 50 302271 java.net.SocketInputStream.socketRead0 46 0.03% 97.02% 48 302000 java.util.zip.Deflater.deflateBytes 47 0.03% 97.06% 47 303268 org.hsqldb.lib.HsqlTimer$TaskQueue.park 48 0.03% 97.09% 42 302251 java.net.SocketInputStream.socketRead0 49 0.03% 97.12% 42 305688 java.net.SocketInputStream.socketRead0 50 0.03% 97.15% 42 305720 org.hsqldb.Expression.compareValues 51 0.03% 97.17% 39 305693 org.hsqldb.store.BaseHashMap.getLookup 52 0.02% 97.20% 35 305711 org.hsqldb.Table$RowStore.get 53 0.02% 97.22% 35 302328 java.net.SocketInputStream.socketRead0 54 0.02% 97.25% 34 305704 org.hsqldb.store.BaseHashMap.getLookup 55 0.02% 97.27% 33 305772 java.net.SocketInputStream.socketRead0 56 0.02% 97.29% 30 306145 java.net.SocketInputStream.socketRead0 57 0.02% 97.31% 30 305942 java.io.WinNTFileSystem.getBooleanAttributes 58 0.02% 97.33% 29 305702 org.hsqldb.Table$RowStore.get 59 0.02% 97.36% 29 305703 org.hsqldb.Table$RowStore.get 60 0.02% 97.38% 28 305708 org.hsqldb.store.BaseHashMap.getLookup 61 0.02% 97.39% 28 305712 org.hsqldb.Table$RowStore.get 62 0.02% 97.41% 27 305696 org.hsqldb.store.BaseHashMap.getLookup 63 0.02% 97.43% 26 305724 org.hsqldb.Expression.test 64 0.02% 97.45% 26 305742 java.net.SocketInputStream.socketRead0 65 0.02% 97.47% 24 305706 org.hsqldb.store.BaseHashMap.getLookup 66 0.02% 97.48% 24 304655 java.net.SocketInputStream.socketRead0 67 0.02% 97.50% 24 305716 org.hsqldb.store.BaseHashMap.getLookup 68 0.02% 97.52% 24 305251 java.io.WinNTFileSystem.getBooleanAttributes 69 0.02% 97.54% 24 303638 java.io.FileOutputStream.close0 70 0.02% 97.55% 23 305710 org.hsqldb.Index$IndexRowIterator.next 71 0.02% 97.57% 22 303654 java.lang.Object.wait 72 0.02% 97.58% 22 304658 java.net.SocketInputStream.socketRead0 73 0.02% 97.60% 22 305723 org.hsqldb.Expression.test 74 0.02% 97.61% 22 305707 org.hsqldb.Table$RowStore.get 75 0.01% 97.63% 21 301892 java.util.zip.Inflater.inflateBytes 76 0.01% 97.64% 20 300219 java.lang.ClassLoader.defineClass1 77 0.01% 97.66% 20 303262 java.io.WinNTFileSystem.getBooleanAttributes 78 0.01% 97.67% 19 304651 java.net.SocketInputStream.socketRead0 79 0.01% 97.68% 19 303328 java.io.WinNTFileSystem.getBooleanAttributes 80 0.01% 97.70% 18 301985 java.io.FileDescriptor.sync 81 0.01% 97.71% 18 305735 org.hsqldb.store.BaseHashMap.getLookup 82 0.01% 97.72% 18 305770 org.hsqldb.Expression.test 83 0.01% 97.74% 18 305759 org.hsqldb.store.BaseHashMap.getLookup 84 0.01% 97.75% 18 305767 org.hsqldb.store.BaseHashMap.getLookup 85 0.01% 97.76% 18 304656 java.net.SocketInputStream.socketRead0 86 0.01% 97.77% 17 303633 org.hsqldb.lib.HsqlTimer.nextTask 87 0.01% 97.79% 17 305757 org.hsqldb.Expression.compareValues 88 0.01% 97.80% 16 304650 java.net.SocketInputStream.socketRead0 89 0.01% 97.81% 16 305714 org.hsqldb.store.BaseHashMap.getLookup 90 0.01% 97.82% 16 305768 org.hsqldb.Index.next 91 0.01% 97.83% 15 305776 java.net.SocketInputStream.socketRead0 CPU SAMPLES END