[ ... lines deleted ... ]

metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX  oa:   <http://www.w3.org/ns/oa#>
PREFIX  oboe-core: <http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#>
PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX  dcterms: <http://purl.org/dc/terms/>

SELECT  ?standard_sm ?pid
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
WHERE
  { ?measurement rdf:type oboe-core:Measurement .
    ?measurement rdf:type ?restriction .
    ?restriction owl:onProperty oboe-core:usesStandard .
    ?restriction owl:allValuesFrom ?standard .
    ?standard (rdfs:subClassOf)+ ?standard_sm .
    ?standard_sm rdfs:subClassOf oboe-core:Standard .
    ?annotation oa:hasBody ?measurement .
    ?annotation oa:hasTarget ?target .
    ?target oa:hasSource ?metadata .
    ?metadata dcterms:identifier ?pid
  }
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [DEBUG]: Segment: 0 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [DEBUG]: Segment: 0 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 25621 => [25, 172032] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [DEBUG]: Segment: 25 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 63499 => [62, 90112] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [DEBUG]: Segment: 62 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX  oa:   <http://www.w3.org/ns/oa#>
PREFIX  oboe-core: <http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#>
PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX  dcterms: <http://purl.org/dc/terms/>

SELECT  ?characteristic_sm ?pid
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
WHERE
  { ?measurement rdf:type oboe-core:Measurement .
    ?measurement rdf:type ?restriction .
    ?restriction owl:onProperty oboe-core:ofCharacteristic .
    ?restriction owl:allValuesFrom ?characteristic .
    ?characteristic (rdfs:subClassOf)+ ?characteristic_sm .
    ?characteristic_sm rdfs:subClassOf oboe-core:Characteristic .
    ?annotation oa:hasBody ?measurement .
    ?annotation oa:hasTarget ?target .
    ?target oa:hasSource ?metadata .
    ?metadata dcterms:identifier ?pid
  }
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 63499 => [62, 90112] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX  prov: <http://www.w3.org/ns/prov#>
PREFIX  oa:   <http://www.w3.org/ns/oa#>
PREFIX  foaf: <http://xmlns.com/foaf/0.1/>
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX  dcterms: <http://purl.org/dc/terms/>

SELECT  ?creator_sm ?pid
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
WHERE
  { ?metadata dcterms:identifier ?pid .
    ?metadata prov:wasAttributedTo ?person .
    ?person dcterms:identifier ?creator_sm
  }
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 68610 => [67, 16384] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [DEBUG]: Segment: 0 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [DEBUG]: Segment: 22 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1764353 => [1723, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [DEBUG]: Segment: 1723 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [DEBUG]: Segment: 60 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 61440 => [60, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX  prov: <http://www.w3.org/ns/prov#>
PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX  ore:  <http://www.openarchives.org/ore/terms/>
PREFIX  dcterms: <http://purl.org/dc/terms/>

SELECT  (str(?pidValue) AS ?pid) (str(?wasDerivedFromValue) AS ?wasDerivedFrom)
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
WHERE
  { ?derived_data prov:wasDerivedFrom ?primary_data .
    ?derived_data dcterms:identifier ?pidValue .
    ?primary_data dcterms:identifier ?wasDerivedFromValue
  }
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 64527 => [63, 122880] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [DEBUG]: Segment: 63 [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1764353 => [1723, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) ( ?wasDerivedFrom = "urn:uuid:ee635a61-c930-444d-8214-db65178a1a47" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:2c20432e-116a-4085-b8d6-abfc4b2dada2" ) ( ?wasDerivedFrom = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) ( ?wasDerivedFrom = "urn:uuid:23495598-d50b-4317-b0e1-05a9d9e52632" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) ( ?wasDerivedFrom = "urn:uuid:672ba6c5-8812-4c05-a324-246af172c67a" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) ( ?wasDerivedFrom = "urn:uuid:e534b2ab-3a1b-44ed-8a99-ce54a0487aea" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX  prov: <http://www.w3.org/ns/prov#>
PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX  ore:  <http://www.openarchives.org/ore/terms/>
PREFIX  dcterms: <http://purl.org/dc/terms/>

SELECT  (str(?pidValue) AS ?pid) (str(?wasGeneratedByValue) AS ?wasGeneratedBy)
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
WHERE
  { ?result prov:wasGeneratedBy ?activity .
    ?result dcterms:identifier ?pidValue .
    ?activity dcterms:identifier ?wasGeneratedByValue
  }
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 64535 => [63, 188416] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1764353 => [1723, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) ( ?wasGeneratedBy = "urn:uuid:d8e46217-2650-42b2-896f-0f006b1a2d3b" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:2c20432e-116a-4085-b8d6-abfc4b2dada2" ) ( ?wasGeneratedBy = "urn:uuid:9ceeaeb3-6ef3-4b1e-bc4d-96e299fab3a4" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:a0e104da-c925-4765-af60-29310de1b99a" ) ( ?wasGeneratedBy = "urn:uuid:9ceeaeb3-6ef3-4b1e-bc4d-96e299fab3a4" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX  prov: <http://www.w3.org/ns/prov#>
PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX  ore:  <http://www.openarchives.org/ore/terms/>
PREFIX  dcterms: <http://purl.org/dc/terms/>

SELECT  (str(?pidValue) AS ?pid) (str(?wasInformedByValue) AS ?wasInformedBy)
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
WHERE
  { ?activity prov:wasInformedBy ?previousActivity .
    ?activity dcterms:identifier ?pidValue .
    ?previousActivity dcterms:identifier ?wasInformedByValue
  }
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 25605 => [25, 40960] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: Executing SPARQL query:
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX  prov: <http://www.w3.org/ns/prov#>
PREFIX  owl:  <http://www.w3.org/2002/07/owl#>
PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX  ore:  <http://www.openarchives.org/ore/terms/>
PREFIX  dcterms: <http://purl.org/dc/terms/>

SELECT  (str(?pidValue) AS ?pid) (str(?usedValue) AS ?used)
FROM <urn:uuid:e029b6e4-be07-442b-a54e-2d0aca657294>
WHERE
  { ?activity prov:used ?data .
    ?activity dcterms:identifier ?pidValue .
    ?data dcterms:identifier ?usedValue
  }
 [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [DEBUG]: Lock : hz.client.1.Listener [com.hp.hpl.jena.shared.LockMRSW]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 68619 => [67, 90112] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1764353 => [1723, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:d8e46217-2650-42b2-896f-0f006b1a2d3b" ) ( ?used = "urn:uuid:ee635a61-c930-444d-8214-db65178a1a47" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:9ceeaeb3-6ef3-4b1e-bc4d-96e299fab3a4" ) ( ?used = "urn:uuid:621a115f-f1ed-4bef-bca5-f8741793a540" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:d8e46217-2650-42b2-896f-0f006b1a2d3b" ) ( ?used = "urn:uuid:23495598-d50b-4317-b0e1-05a9d9e52632" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:d8e46217-2650-42b2-896f-0f006b1a2d3b" ) ( ?used = "urn:uuid:672ba6c5-8812-4c05-a324-246af172c67a" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786880 => [1745, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 0 => [0, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 22528 => [22, 0] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: 1786881 => [1745, 8192] [com.hp.hpl.jena.tdb.base.file.BlockAccessMapped]
metacat-index 20161122-10:20:15: [TRACE]: ( ?pid = "urn:uuid:d8e46217-2650-42b2-896f-0f006b1a2d3b" ) ( ?used = "urn:uuid:e534b2ab-3a1b-44ed-8a99-ce54a0487aea" ) [org.dataone.cn.indexer.annotation.RdfXmlSubprocessor]
metacat-index 20161122-10:20:15: [DEBUG]: <No txn>: Start flush delayed commits [TDB]
metacat-index 20161122-10:20:15: [DEBUG]: <No txn>: End flush delayed commits [TDB]
java.lang.NullPointerException
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.getSolrDocs(RdfXmlSubprocessor.java:278)
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.process(RdfXmlSubprocessor.java:265)
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.processDocument(RdfXmlSubprocessor.java:119)
	at edu.ucsb.nceas.metacat.index.SolrIndex.process(SolrIndex.java:235)
	at edu.ucsb.nceas.metacat.index.SolrIndex.insert(SolrIndex.java:386)
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:597)
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:552)
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryUpdated(SystemMetadataEventListener.java:146)
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryAdded(SystemMetadataEventListener.java:119)
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:148)
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:130)
	at com.hazelcast.client.impl.ListenerManager.customRun(ListenerManager.java:88)
	at com.hazelcast.client.ClientRunnable.run(ClientRunnable.java:30)
	at java.lang.Thread.run(Thread.java:745)
metacat-index 20161122-10:20:15: [ERROR]: null [edu.ucsb.nceas.metacat.index.SolrIndex]
java.lang.NullPointerException
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.getSolrDocs(RdfXmlSubprocessor.java:278)
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.process(RdfXmlSubprocessor.java:265)
	at org.dataone.cn.indexer.annotation.RdfXmlSubprocessor.processDocument(RdfXmlSubprocessor.java:119)
	at edu.ucsb.nceas.metacat.index.SolrIndex.process(SolrIndex.java:235)
	at edu.ucsb.nceas.metacat.index.SolrIndex.insert(SolrIndex.java:386)
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:597)
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:552)
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryUpdated(SystemMetadataEventListener.java:146)
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryAdded(SystemMetadataEventListener.java:119)
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:148)
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:130)
	at com.hazelcast.client.impl.ListenerManager.customRun(ListenerManager.java:88)
	at com.hazelcast.client.ClientRunnable.run(ClientRunnable.java:30)
	at java.lang.Thread.run(Thread.java:745)
metacat-index 20161122-10:20:15: [ERROR]: SolrIndex.update - could not update the solr index since null [edu.ucsb.nceas.metacat.index.SolrIndex]
org.apache.solr.client.solrj.SolrServerException
	at edu.ucsb.nceas.metacat.index.SolrIndex.process(SolrIndex.java:241)
	at edu.ucsb.nceas.metacat.index.SolrIndex.insert(SolrIndex.java:386)
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:597)
	at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:552)
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryUpdated(SystemMetadataEventListener.java:146)
	at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryAdded(SystemMetadataEventListener.java:119)
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:148)
	at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:130)
	at com.hazelcast.client.impl.ListenerManager.customRun(ListenerManager.java:88)
	at com.hazelcast.client.ClientRunnable.run(ClientRunnable.java:30)
	at java.lang.Thread.run(Thread.java:745)
metacat-index 20161122-10:20:15: [INFO]: [] webapp=null path=/select params={q=id%3A%22urn%3Auuid%3Ae029b6e4-be07-442b-a54e-2d0aca657294%22} hits=1 status=0 QTime=0  [org.apache.solr.core.SolrCore]
metacat-index 20161122-10:20:15: [DEBUG]: Adding field: create_count_i [edu.ucsb.nceas.metacat.index.SolrIndex]
metacat-index 20161122-10:20:15: [DEBUG]: Adding field: id [edu.ucsb.nceas.metacat.index.SolrIndex]
metacat-index 20161122-10:20:15: [DEBUG]: Adding field: isService [edu.ucsb.nceas.metacat.index.SolrIndex]
metacat-index 20161122-10:20:15: [DEBUG]: Adding field: serviceCoupling [edu.ucsb.nceas.metacat.index.SolrIndex]
metacat-index 20161122-10:20:15: [DEBUG]: Adding field: read_count_i [edu.ucsb.nceas.metacat.index.SolrIndex]

[ ... lines deleted ...]