Ecoinformatics Redmine: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362017-11-17T21:19:00ZEcoinformatics Redmine
Redmine Metacat - Bug #7229 (New): Mis-Formatting of Data Package Contentshttps://projects.ecoinformatics.org/ecoinfo/issues/72292017-11-17T21:19:00ZThomas Thelen
<p>In MetacatUI we're getting a slight mis-formatting when displaying data package contents. This can be seen in the attached images. The issue was initially reported in MetacatUI as issue 379.</p>
<p><a class="external" href="https://github.com/NCEAS/metacatui/issues/379">https://github.com/NCEAS/metacatui/issues/379</a></p>
<p>From Bryce,</p>
<p>"The HTML in question is actually produced by Metacat and MetcatUI is just rendering it without modification from Metacat's View Service. ... The fix would involve changing the underlying eml-2 XSLT."</p> Metacat - Bug #7182 (New): Allow partial package downloads when some of the objects are private https://projects.ecoinformatics.org/ecoinfo/issues/71822017-04-13T15:10:57ZLauren Walkerwalker@nceas.ucsb.edu
<p>When you try to download a package that has at least one private object, you get a 401 - Unauthorized response. When I am authorized to read at least one object in a package, I would expect to still be able to download the .zip package with those objects.</p>
<p>It's difficult for MetacatUI to tell when the "Download All" will fail, since it would need to check the /isAuthorized/{pid}?action=read result for every single object in the package, which can sometimes be >100. So right now we have an issue where users are getting a failed package download.</p> Metacat - Bug #6959 (New): http response charset not includedhttps://projects.ecoinformatics.org/ecoinfo/issues/69592016-02-11T00:29:11ZPeter Slaughterslaughter@nceas.ucsb.edu
<p>Metacat doesn't include the content type charset in the http response headers:</p>
<p>curl -o test.dat -v "https://knb.ecoinformatics.org/knb/d1/mn/v2/object/solson.25.5" returns</p>
<p>Content-Type: text/csv</p>
<p>but should be something like:</p>
<p>Content-Type: text/xml;charset=UTF-8</p>
<p>so that the client doesn't have to assume the charset</p> Metacat - Feature #6848 (New): Add link to send another verification emailhttps://projects.ecoinformatics.org/ecoinfo/issues/68482015-09-30T16:29:26ZLauren Walkerwalker@nceas.ucsb.edu
<p>This has been something suggested by a few users when they don't get their original verification email</p> Metacat - Support #6838 (In Progress): LTER user can't log inhttps://projects.ecoinformatics.org/ecoinfo/issues/68382015-08-28T23:41:47ZJing Taotao@nceas.ucsb.edu
<p>marco: ldap.lternet.edu should still work<br />[4:32pm] Jing: but why the search doesn’t work?<br />[4:32pm] Jing: and i can’t log in it from knb web page.<br />[4:34pm] marco: my guess is that the connection is trying to connect to 389, which IIRC is where startTLS initiates<br />[4:34pm] marco: port 389 is now blocked - not my decision<br />[4:34pm] Jing: aha.<br />[4:35pm] Jing: thanks, marco<br />[4:35pm] marco: if necessary, 389 can be opened for a specific IP or range<br />[4:35pm] marco: and startTLS enabled<br />[4:37pm] marco: we'll work with mark schildhauer next week to figure out the disposition of LDAP</p> Metacat - Support #6793 (In Progress): Update DOIs from KNB to redirect to view servicehttps://projects.ecoinformatics.org/ecoinfo/issues/67932015-07-02T19:00:00ZMatt Jonesjones@nceas.ucsb.edu
<p>In <a class="issue tracker-2 status-3 priority-2 priority-default closed" title="Feature: Create a new service to update DOI pointers (Resolved)" href="https://projects.ecoinformatics.org/ecoinfo/issues/6530">#6530</a> and <a class="issue tracker-5 status-5 priority-2 priority-default closed" title="Story: Keep DOI registrations current and resolvable (Closed)" href="https://projects.ecoinformatics.org/ecoinfo/issues/6440">#6440</a>, we added features to update DOI registrations, but we still have many originally assigned DOIs that redirect to the raw EML document rather than our landing page for a data set. We need to fix all of the /AA/ DOI registrations in the KNB and ensure they point to the right View service page. For DOIs for metadata, that would be the associated /view url for that DOI. For data files and resource maps, its to the view for the associated metadata. E.g.,</p>
<ul>
<li>Metadata doi:10.5063/AA/nceas.227.15 should redirect to <a class="external" href="https://knb.ecoinformatics.org/#view/doi:10.5063/AA/nceas.227.15">https://knb.ecoinformatics.org/#view/doi:10.5063/AA/nceas.227.15</a></li>
<li>Data doi:10.5063/AA/wtyburczy.30.1 should redirect to the same metadata file <a class="external" href="https://knb.ecoinformatics.org/#view/doi:10.5063/AA/nceas.227.15">https://knb.ecoinformatics.org/#view/doi:10.5063/AA/nceas.227.15</a></li>
</ul>
<p>Also, when a user updates metadata for a package (but doesn't change the data), the DOI redirect for the data will need to be updated to point to the new metadata. Let's verify that this is happening automatically in Metacat.</p> Morpho - Bug #6702 (New): Import metadata indexing optionhttps://projects.ecoinformatics.org/ecoinfo/issues/67022015-03-27T21:59:28ZJessica Couturecouture@nceas.ucsb.edu
<p>When metadata is added to a package from an external file, Morpho creates a new identifier for it rather than incrementing the existing identifier. It would be great to have the option to either add the metadata to the existing series or create a new identifier when the file is brought in.</p> Morpho - Bug #6701 (New): Entity descriptions can't be added outside wizardhttps://projects.ecoinformatics.org/ecoinfo/issues/67012015-03-27T21:56:52ZJessica Couturecouture@nceas.ucsb.edu
<p>I was trying to add entity descriptions after my tables had been imported and found that there is no way to go back and access this. Can this function be added so that this can be edited outside the initial data wizard has been closed?</p> Morpho - Bug #6700 (New): Pub date fieldhttps://projects.ecoinformatics.org/ecoinfo/issues/67002015-03-27T21:54:54ZJessica Couturecouture@nceas.ucsb.edu
<p>The publication data defaults to the current date and there is no way to manually set this in Morpho. Can we have one added for datasets that had been published in the past?</p> Morpho - Bug #6589 (New): common name in taxonomic coveragehttps://projects.ecoinformatics.org/ecoinfo/issues/65892014-08-28T20:02:32ZJessica Couturecouture@nceas.ucsb.edu
<p>When inputting taxonomic coverage manually there is an option to put common name but when assigning columns of names from a table, only the scientific classes are available. It would be helpful to be able to add common names from a table too.</p> Kepler - Bug #6588 (New): R actor does not have error for missing outputhttps://projects.ecoinformatics.org/ecoinfo/issues/65882014-08-21T20:27:56ZDaniel Crawldanielcrawl@gmail.com
<p>If the R actor has an output port "x", but the script does not assign a value to a variable "x", then the actor should report an error. Currently, the actor successfully runs but does not write a token to the output port.</p> Kepler - Feature #6575 (New): reference parameters in R actor's scripthttps://projects.ecoinformatics.org/ecoinfo/issues/65752014-07-09T21:40:18ZDaniel Crawldanielcrawl@gmail.com
<p>It would be nice if the script in the R actor could reference parameters that were added to the R actor. Currently the R actor only converts tokens read on input ports to the R script.</p> Metacat - Feature #6416 (In Progress): Do not allow restrictive access control change to content ...https://projects.ecoinformatics.org/ecoinfo/issues/64162014-02-11T18:34:16Zben leinfelderleinfelder@nceas.ucsb.eduSemtools - Story #6253 (In Progress): Design/implement semantic indexing systemhttps://projects.ecoinformatics.org/ecoinfo/issues/62532013-11-26T17:16:51Zben leinfelderleinfelder@nceas.ucsb.eduMorpho - Bug #6112 (New): Use .morpho when we release the morphohttps://projects.ecoinformatics.org/ecoinfo/issues/61122013-10-01T23:53:37ZJing Taotao@nceas.ucsb.edu
<p>Currently the default morpho home is .morpho2. It is great for users to test morpho without change the file structure. But the real release will use .morpho as the default directory.</p>