Ecoinformatics Redmine: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362010-02-18T20:02:37ZEcoinformatics Redmine
Redmine Kepler - Bug #4808 (Resolved): ant clean-cache fails, NoClassDefFoundError, org/apache/commons/lo...https://projects.ecoinformatics.org/ecoinfo/issues/48082010-02-18T20:02:37ZOliver Soongsoong@nceas.ucsb.edu
<p>Chris first reported this by e-mail, but I'm still seeing it. Aaron, svn says you put these lines in.</p>
<p>java.lang.NoClassDefFoundError: org/apache/commons/logging/LogFactory<br /> at org.kepler.util.DotKeplerManager.<clinit>(DotKeplerManager.java:54)<br /> at org.kepler.build.CleanCache.run(CleanCache.java:48)<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:86)<br /> at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:288)<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.j\<br />ava:39)<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccess\<br />orImpl.java:25)<br /> at java.lang.reflect.Method.invoke(Method.java:592)<br /> at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java\<br />:106)<br /> at org.apache.tools.ant.Task.perform(Task.java:348)<br /> at org.apache.tools.ant.Target.execute(Target.java:357)<br /> at org.apache.tools.ant.Target.performTasks(Target.java:385)<br /> at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)<br /> at org.apache.tools.ant.Project.executeTarget(Project.java:1306)<br /> at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExec\<br />utor.java:41)<br /> at org.apache.tools.ant.Project.executeTargets(Project.java:1189)<br /> at org.apache.tools.ant.Main.runBuild(Main.java:758)<br /> at org.apache.tools.ant.Main.startAnt(Main.java:217)<br /> at org.apache.tools.ant.launch.Launcher.run(Launcher.java:257)<br /> at org.apache.tools.ant.launch.Launcher.main(Launcher.java:104)</p> Kepler - Bug #4806 (New): add output port to Throw Exceptionhttps://projects.ecoinformatics.org/ecoinfo/issues/48062010-02-18T00:11:32ZOliver Soongsoong@nceas.ucsb.edu
<p>In some of my workflows, I have an actor that checks that certain components are installed and working before trying to run the workflow. If things are missing, it uses the Throw Exception actor to stop execution and display an error message. Right now, it's possible for the director to schedule the entire workflow before the error check, even if I use the "check" actor as a trigger. I just want some way to convince the director that needs to fire the Throw Exception actor before the rest of the workflow.</p> Kepler - Bug #4705 (Resolved): ant change-to -Dsuite=wrp gives errorhttps://projects.ecoinformatics.org/ecoinfo/issues/47052010-01-28T18:00:04ZOliver Soongsoong@nceas.ucsb.edu
<p>Error: ptolemy is either not a suite or wasn't downloaded correctly.</p>
<p>ptolemy looks like it downloaded, svn returned no errors, and the second time I run the command, I get "The module ptolemy already exists." followed by the error.</p> Kepler - Bug #4671 (Resolved): cannot export workflow runs when workflow has actors with <> in th...https://projects.ecoinformatics.org/ecoinfo/issues/46712010-01-15T01:25:58ZOliver Soongsoong@nceas.ucsb.edu
<p>Title says it all. This is at r22494.</p> Kepler - Bug #4639 (New): add support for -Drev to ant change-tohttps://projects.ecoinformatics.org/ecoinfo/issues/46392009-12-18T23:18:03ZOliver Soongsoong@nceas.ucsb.edu
<p>Doesn't happen very often, but I often am not checking out the head revision, and so it would be nice if ant change-to -Dsuite=wrp -Drev=22258 worked in the logical fashion. Not at all important, but probably not very hard.</p> Kepler - Bug #4638 (Resolved): ant clean-all no longer workshttps://projects.ecoinformatics.org/ecoinfo/issues/46382009-12-18T19:33:28ZOliver Soongsoong@nceas.ucsb.edu
<p>This is with modules\build-area at r22254. ant clean-all and ant clean-cache both fail:</p>
<p>build-area\build.xml:4: The following error occurred while executing this line:<br />build-area\settings\taskdefs.xml:34: typedef class org.kepler.build.CleanDotKepler cannot be found</p>
<p>I haven't figured out a workaround yet.</p> Kepler - Bug #4540 (Resolved): authentication problems with dev.nceas.ucsb.eduhttps://projects.ecoinformatics.org/ecoinfo/issues/45402009-11-10T18:42:02ZOliver Soongsoong@nceas.ucsb.edu
<p>If I start Kepler and open a workflow that accesses the dev metacat, I get some error messages and this on the console:</p>
<p>ERROR (org.ecoinformatics.seek.datasource.EcogridDataCacheItem:getDataItemFromEcoGrid:330) EcogridDataCacheItem - error connecting to Ecogrid<br />AxisFault<br /> faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException<br /> faultSubcode:<br /> faultString: java.rmi.RemoteException: Please specify an identifier</p>
<p>The DEV server no longer shows up in my data sources list.</p> Kepler - Bug #4534 (Resolved): add extra space before section headers when BREAK_BEFORE is falsehttps://projects.ecoinformatics.org/ecoinfo/issues/45342009-11-05T19:21:51ZOliver Soongsoong@nceas.ucsb.edu
<p>This is so incredibly trivial, but I can't lower the priority on this any more than it already is.</p>
<p>Section breaks, when BREAK_BEFORE is false, are tight to the previous content on the top, but there is plenty of room between the section header text and the section header horizontal rule. Right now, it looks like the section header text is part of the previous content, and it would look better if there were more space above the section header text.</p>
<p>A workaround is to add a couple of blank text entry boxes before the section header.</p> Kepler - Bug #4528 (Resolved): BREAK_BEFORE property for report sections does not workhttps://projects.ecoinformatics.org/ecoinfo/issues/45282009-11-04T06:14:09ZOliver Soongsoong@nceas.ucsb.edu
<p>I'm not sure if this is broken or just hasn't been implemented, but if I create a trivial workflow and create a trivial report (text, section, text) and set the BREAK_BEFORE property on the section to "true", there doesn't seem to actually be a break before the section.</p> Kepler - Bug #4523 (Resolved): apply button while editing ports acts like commithttps://projects.ecoinformatics.org/ecoinfo/issues/45232009-11-04T02:27:25ZOliver Soongsoong@nceas.ucsb.edu
<p>I think this was triggered by the fix for 4478. The apply button now acts like the commit button, as the ports window is closed even if there is no obvious failure of the change request and even if all of the changes seem to succeed.</p> Kepler - Bug #4510 (Resolved): can't add local repository if its name begins with the name of ano...https://projects.ecoinformatics.org/ecoinfo/issues/45102009-10-28T19:24:57ZOliver Soongsoong@nceas.ucsb.edu
<p>If I've added C:\Documents and Settings\soong\Desktop\kruger as a local repository, I can't add C:\Documents and Settings\soong\Desktop\kruger2. It complains that one is a subdirectory of the other, even though they are not.</p> Kepler - Bug #4033 (Resolved): Can't compile, MakeKars not foundhttps://projects.ecoinformatics.org/ecoinfo/issues/40332009-04-29T02:22:21ZOliver Soongsoong@nceas.ucsb.edu
<p>I can't get the head to build, and the compiler is complaining it can't find MakeKars. Revision 17442 will compile, though. This is with XP, kepler-trunk, having just done svn update and ant update.</p>
<p>Z:\kepler\modules\loader\src\org\kepler\core\loader\Loader.java:34: package org.kepler.build does not exist<br />import org.kepler.build.MakeKars;<br /> ^</p> Kepler - Bug #3973 (New): Additional information for 64-bit users installing 1.0.0https://projects.ecoinformatics.org/ecoinfo/issues/39732009-04-10T23:12:04ZOliver Soongsoong@nceas.ucsb.edu
<p>Kepler 1.0.0 on 64-bit Windows systems seems to require a 32-bit java install, which is not the default provided by java.com. The error claims Java 1.5.0 could not be found, even if 1.5.0 is installed and even though it works with Java 1.6.0. At the very least, a note indicating such at kepler-project.org would help, and this seems to affect both XP and Vista.</p> Kepler - Bug #3925 (Resolved): ant run does not always work from paths with spaceshttps://projects.ecoinformatics.org/ecoinfo/issues/39252009-03-31T20:18:53ZOliver Soongsoong@nceas.ucsb.edu
<p>XP Pro x64 SP2, Java 1.6.0_11, Kepler 1.x dev build 17250</p>
<p>I checked out kepler to C:\Documents and Settings\soong\Desktop, but ant run doesn't work right. If I use the 8.3 filename, it almost works. If I create a junction at a path with no spaces, it works.</p>
<p>Path: C:\Documents and Settings\soong\Desktop\kepler\build-area<br />Fails due to whitespace quoting problem. Error says it can't find the main class "and" which it picks up from Documents and Settings.</p>
<p>Path: C:\Docume~1\soong\Desktop\kepler\build-area<br />Runs, but can't seem to access the network. I can't search KNB. There is no error, but it never returns. Existing datacans from loaded workflows are stuck at "Busy".</p>
<p>Path: C:\tmp\kepler\build-area<br />Seems to work for now.</p> Kepler - Bug #3803 (New): Cannot open a workflow through the command prompt, open with, or send t...https://projects.ecoinformatics.org/ecoinfo/issues/38032009-01-30T01:04:24ZOliver Soongsoong@nceas.ucsb.edu
<p>XP Pro x64 SP2, Java 1.6.0_11, Kepler 1.0.0 from kepler-project.org</p>
<p>If I right click a workflow file and select Open With->Kepler, I get an error.</p>
<p>If I add a shortcut to Kepler to my SendTo menu, then right click the workflow file and use the Send To link, I get the same error.</p>
<p>If I call Kepler from the command prompt with the workflow as the only argument, I get the same error.</p>
<p>An image of the error is at the URL.</p>
<p>I think this feature is available under linux: <br /><a class="external" href="https://dev.kepler-project.org/developers/reference/executing-kepler-from-the-command-line">https://dev.kepler-project.org/developers/reference/executing-kepler-from-the-command-line</a></p>