Ecoinformatics Redmine: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362010-02-18T20:02:37ZEcoinformatics Redmine
Redmine Kepler - Bug #4808 (Resolved): ant clean-cache fails, NoClassDefFoundError, org/apache/commons/lo...https://projects.ecoinformatics.org/ecoinfo/issues/48082010-02-18T20:02:37ZOliver Soongsoong@nceas.ucsb.edu
<p>Chris first reported this by e-mail, but I'm still seeing it. Aaron, svn says you put these lines in.</p>
<p>java.lang.NoClassDefFoundError: org/apache/commons/logging/LogFactory<br /> at org.kepler.util.DotKeplerManager.<clinit>(DotKeplerManager.java:54)<br /> at org.kepler.build.CleanCache.run(CleanCache.java:48)<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:86)<br /> at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:288)<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.j\<br />ava:39)<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccess\<br />orImpl.java:25)<br /> at java.lang.reflect.Method.invoke(Method.java:592)<br /> at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java\<br />:106)<br /> at org.apache.tools.ant.Task.perform(Task.java:348)<br /> at org.apache.tools.ant.Target.execute(Target.java:357)<br /> at org.apache.tools.ant.Target.performTasks(Target.java:385)<br /> at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)<br /> at org.apache.tools.ant.Project.executeTarget(Project.java:1306)<br /> at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExec\<br />utor.java:41)<br /> at org.apache.tools.ant.Project.executeTargets(Project.java:1189)<br /> at org.apache.tools.ant.Main.runBuild(Main.java:758)<br /> at org.apache.tools.ant.Main.startAnt(Main.java:217)<br /> at org.apache.tools.ant.launch.Launcher.run(Launcher.java:257)<br /> at org.apache.tools.ant.launch.Launcher.main(Launcher.java:104)</p> Kepler - Bug #4806 (New): add output port to Throw Exceptionhttps://projects.ecoinformatics.org/ecoinfo/issues/48062010-02-18T00:11:32ZOliver Soongsoong@nceas.ucsb.edu
<p>In some of my workflows, I have an actor that checks that certain components are installed and working before trying to run the workflow. If things are missing, it uses the Throw Exception actor to stop execution and display an error message. Right now, it's possible for the director to schedule the entire workflow before the error check, even if I use the "check" actor as a trigger. I just want some way to convince the director that needs to fire the Throw Exception actor before the rest of the workflow.</p> Kepler - Bug #4705 (Resolved): ant change-to -Dsuite=wrp gives errorhttps://projects.ecoinformatics.org/ecoinfo/issues/47052010-01-28T18:00:04ZOliver Soongsoong@nceas.ucsb.edu
<p>Error: ptolemy is either not a suite or wasn't downloaded correctly.</p>
<p>ptolemy looks like it downloaded, svn returned no errors, and the second time I run the command, I get "The module ptolemy already exists." followed by the error.</p> Kepler - Bug #4653 (Resolved): error message says "data cloumn"https://projects.ecoinformatics.org/ecoinfo/issues/46532010-01-08T01:13:53ZOliver Soongsoong@nceas.ucsb.edu
<p>The data cloumn didn't match head column</p> Kepler - Bug #4639 (New): add support for -Drev to ant change-tohttps://projects.ecoinformatics.org/ecoinfo/issues/46392009-12-18T23:18:03ZOliver Soongsoong@nceas.ucsb.edu
<p>Doesn't happen very often, but I often am not checking out the head revision, and so it would be nice if ant change-to -Dsuite=wrp -Drev=22258 worked in the logical fashion. Not at all important, but probably not very hard.</p> Kepler - Bug #4638 (Resolved): ant clean-all no longer workshttps://projects.ecoinformatics.org/ecoinfo/issues/46382009-12-18T19:33:28ZOliver Soongsoong@nceas.ucsb.edu
<p>This is with modules\build-area at r22254. ant clean-all and ant clean-cache both fail:</p>
<p>build-area\build.xml:4: The following error occurred while executing this line:<br />build-area\settings\taskdefs.xml:34: typedef class org.kepler.build.CleanDotKepler cannot be found</p>
<p>I haven't figured out a workaround yet.</p> Morpho - Bug #4624 (New): local/network status icons sometimes (inconsistently) incorrecthttps://projects.ecoinformatics.org/ecoinfo/issues/46242009-12-11T01:44:18ZOliver Soongsoong@nceas.ucsb.edu
<p>A package that only exists remotely gets a network icon but no local icon. After a sync from remote->local, some packages get a local icon but no network icon. If I delete the local copy and close and re-open the package listing (forcing refresh), I see the correct network-only status icon. What's really odd is this happens inconsistently. It will happen to a package.revision consistently, but it may not happen to package.revision+1 or to a different package.</p> Metacat - Bug #4610 (New): trying to register a dataset when logged in asks for another authentic...https://projects.ecoinformatics.org/ecoinfo/issues/46102009-12-09T00:28:09ZOliver Soongsoong@nceas.ucsb.edu
<p>I log into KNB, then go to Register your dataset online, and it says I must register. The register dataset page seems to be ignoring the existing credentials.</p> Metacat - Bug #4609 (New): when viewed with saved credentials, KNB homepage shows blank entrieshttps://projects.ecoinformatics.org/ecoinfo/issues/46092009-12-09T00:23:12ZOliver Soongsoong@nceas.ucsb.edu
<p>I sign into the KNB, then close the window (but not the browser). The cookie persists, so when I go back to the KNB home page, it picks up the saved credentials from earlier. However, the login space shows no entries (blank username and password, -- choose one -- for the organization), so I can't be sure who I'm logged in as.</p>
<p>This also happens with dev.nceas.ucsb.edu.</p> Kepler - Bug #4534 (Resolved): add extra space before section headers when BREAK_BEFORE is falsehttps://projects.ecoinformatics.org/ecoinfo/issues/45342009-11-05T19:21:51ZOliver Soongsoong@nceas.ucsb.edu
<p>This is so incredibly trivial, but I can't lower the priority on this any more than it already is.</p>
<p>Section breaks, when BREAK_BEFORE is false, are tight to the previous content on the top, but there is plenty of room between the section header text and the section header horizontal rule. Right now, it looks like the section header text is part of the previous content, and it would look better if there were more space above the section header text.</p>
<p>A workaround is to add a couple of blank text entry boxes before the section header.</p> Kepler - Bug #4511 (Resolved): There are 2 toolbars in the Kepler main windowhttps://projects.ecoinformatics.org/ecoinfo/issues/45112009-10-28T20:46:23ZOliver Soongsoong@nceas.ucsb.edu
<p>There are 2 toolbars in the Kepler main window, one of which is empty. I've seen this using wrp on Windows and linux. If you drag the main toolbar from its docked location, it is possible to drag a second empty toolbar from the docked area by clicking in just the right place between the menu bar and the tab bars.</p> Kepler - Bug #4139 (In Progress): port names are displayed twicehttps://projects.ecoinformatics.org/ecoinfo/issues/41392009-06-09T02:20:31ZOliver Soongsoong@nceas.ucsb.edu
<p>When I choose to show port names, they are displayed once next to the port as expected and once in the upper left corner of the actor in a bold-looking font. This appears in both XP and linux.</p> Kepler - Bug #3988 (Resolved): Rectangle shifts position on resizehttps://projects.ecoinformatics.org/ecoinfo/issues/39882009-04-17T19:11:11ZOliver Soongsoong@nceas.ucsb.edu
<p>If I create a rectangle (components->workflow->workflow documentation) and resize it, the entire rectangle shifts slightly up and left.</p> Kepler - Bug #3973 (New): Additional information for 64-bit users installing 1.0.0https://projects.ecoinformatics.org/ecoinfo/issues/39732009-04-10T23:12:04ZOliver Soongsoong@nceas.ucsb.edu
<p>Kepler 1.0.0 on 64-bit Windows systems seems to require a 32-bit java install, which is not the default provided by java.com. The error claims Java 1.5.0 could not be found, even if 1.5.0 is installed and even though it works with Java 1.6.0. At the very least, a note indicating such at kepler-project.org would help, and this seems to affect both XP and Vista.</p> Kepler - Bug #3803 (New): Cannot open a workflow through the command prompt, open with, or send t...https://projects.ecoinformatics.org/ecoinfo/issues/38032009-01-30T01:04:24ZOliver Soongsoong@nceas.ucsb.edu
<p>XP Pro x64 SP2, Java 1.6.0_11, Kepler 1.0.0 from kepler-project.org</p>
<p>If I right click a workflow file and select Open With->Kepler, I get an error.</p>
<p>If I add a shortcut to Kepler to my SendTo menu, then right click the workflow file and use the Send To link, I get the same error.</p>
<p>If I call Kepler from the command prompt with the workflow as the only argument, I get the same error.</p>
<p>An image of the error is at the URL.</p>
<p>I think this feature is available under linux: <br /><a class="external" href="https://dev.kepler-project.org/developers/reference/executing-kepler-from-the-command-line">https://dev.kepler-project.org/developers/reference/executing-kepler-from-the-command-line</a></p>