Ecoinformatics Redmine: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362010-09-29T15:16:30ZEcoinformatics Redmine
Redmine Kepler - Bug #5192 (New): Module Manager reacts badly to dot files in resources/configuration dir...https://projects.ecoinformatics.org/ecoinfo/issues/51922010-09-29T15:16:30ZChristopher Brookscxh@eecs.berkeley.edu
<p>I was trying to follow the 2.1 instructions at<br /><a class="external" href="https://kepler-project.org/developers/teams/build/kepler-2.1-release-roadmap/?searchterm=roadmap">https://kepler-project.org/developers/teams/build/kepler-2.1-release-roadmap/?searchterm=roadmap</a></p>
<p>and edited <br />kepler-2.1/module-manager-2.1/resources/configurations/configuration.xml<br />with Emacs, which created<br />kepler-2.1/module-manager-2.1/resources/configurations/.#configuration.xml</p>
<p>Then ant clean-all run<br />failed:</p>
<p>run:<br /> [run] setting dock icon to -Xdock:icon=/Users/cxh/src/kepler-2.1/common-2.1/resources/icons/kepler-dock-icon.png<br /> [run] Set environment variable: PATH = /Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/Users/cxh/ptII/vendors/misc/dbxml-2.5.16/install/bin:/Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/opt/subversion/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/texbin:/usr/local/texlive/2007/bin:/usr/local/git/bin:/Users/cxh/ptII/vendors/misc/dbxml-2.5.16/install/bin:/Users/cxh/ptII/vendors/misc/dbxml-2.5.16/install/bin:/Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/opt/subversion/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/texbin:/usr/local/texlive/2007/bin:/usr/texbin:/usr/local/texlive/2007/bin:/Users/cxh/ptII/vendors/misc/dbxml-2.5.16/install/bin:/Users/cxh/src/kepler-2.1/r-2.1/lib:/Users/cxh/src/kepler-2.1/common-2.1/lib/ptolemy/matlab:/Users/cxh/src/kepler-2.1/common-2.1/lib<br /> [run] Set environment variable: R_HOME = /Library/Frameworks/R.framework/Resources<br /> [run] /Users/cxh/src/kepler-2.1<br /> [run] java.io.FileNotFoundException: /Users/cxh/src/kepler-2.1/module-manager-2.1/resources/configurations/.#configuration.xml (No such file or directory)<br /> [run] at java.io.FileInputStream.open(Native Method)<br /> [run] at java.io.FileInputStream.<init>(FileInputStream.java:106)<br /> [run] at org.kepler.configuration.CommonsConfigurationReader.loadConfiguration(CommonsConfigurationReader.java:144)<br /> [run] at org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:92)<br /> [run] at org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:64)<br /> [run] at org.kepler.configuration.ConfigurationManager.loadConfiguration(ConfigurationManager.java:420)<br /> [run] at org.kepler.configuration.ConfigurationManager.<init>(ConfigurationManager.java:87)<br /> [run] at org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:116)<br /> [run] at org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:105)<br /> [run] at org.kepler.modulemanager.RepositoryLocations.initReleaseLocation(RepositoryLocations.java:24)<br /> [run] at org.kepler.modulemanager.RepositoryLocations.getReleaseLocation(RepositoryLocations.java:18)<br /> [run] at org.kepler.Kepler.main(Kepler.java:89)<br /> [run] org.kepler.configuration.ConfigurationManagerException: Error loading configuration file: /Users/cxh/src/kepler-2.1/module-manager-2.1/resources/configurations/.#configuration.xml (No such file or directory)<br /> [run] at org.kepler.configuration.CommonsConfigurationReader.loadConfiguration(CommonsConfigurationReader.java:171)<br /> [run] at org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:92)<br /> [run] at org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:64)<br /> [run] at org.kepler.configuration.ConfigurationManager.loadConfiguration(ConfigurationManager.java:420)<br /> [run] at org.kepler.configuration.ConfigurationManager.<init>(ConfigurationManager.java:87)<br /> [run] at org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:116)<br /> [run] at org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:105)<br /> [run] at org.kepler.modulemanager.RepositoryLocations.initReleaseLocation(RepositoryLocations.java:24)<br /> [run] at org.kepler.modulemanager.RepositoryLocations.getReleaseLocation(RepositoryLocations.java:18)<br /> [run] at org.kepler.Kepler.main(Kepler.java:89)<br /> [run] org.kepler.configuration.ConfigurationManagerException: Error loading configuration: Error loading configuration file: /Users/cxh/src/kepler-2.1/module-manager-2.1/resources/configurations/.#configuration.xml (No such file or directory)<br /> [run] at org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:105)<br /> [run] at org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:64)<br /> [run] at org.kepler.configuration.ConfigurationManager.loadConfiguration(ConfigurationManager.java:420)<br /> [run] at org.kepler.configuration.ConfigurationManager.<init>(ConfigurationManager.java:87)<br /> [run] at org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:116)<br /> [run] at org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:105)<br /> [run] at org.kepler.modulemanager.RepositoryLocations.initReleaseLocation(RepositoryLocations.java:24)<br /> [run] at org.kepler.modulemanager.RepositoryLocations.getReleaseLocation(RepositoryLocations.java:18)<br /> [run] at org.kepler.Kepler.main(Kepler.java:89)<br /> [run] Exception in thread "main" java.lang.RuntimeException: Could not load configuration: Error loading configuration: Error loading configuration file: /Users/cxh/src/kepler-2.1/module-manager-2.1/resources/configurations/.#configuration.xml (No such file or directory)<br /> [run] at org.kepler.configuration.ConfigurationManager.<init>(ConfigurationManager.java:93)<br /> [run] at org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:116)<br /> [run] at org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:105)<br /> [run] at org.kepler.modulemanager.RepositoryLocations.initReleaseLocation(RepositoryLocations.java:24)<br /> [run] at org.kepler.modulemanager.RepositoryLocations.getReleaseLocation(RepositoryLocations.java:18)<br /> [run] at org.kepler.Kepler.main(Kepler.java:89)</p>
<p>BUILD FAILED<br />/Users/cxh/src/kepler-2.1/build-area/build.xml:36: Java returned: 1</p>
<p>Total time: 2 minutes 52 seconds<br />bash-3.2$ ls ~/src/kepler-2.1/module-manager-2.1/resources/configurations/<br />configuration.xml<br />bash-3.2$ ls -a ~/src/kepler-2.1/module-manager-2.1/resources/configurations/<br />. .. configuration.xml<br />.#configuration.xml .svn<br />bash-3.2$</p> Kepler - Bug #5155 (New): To exclude a file or directory requires updating at least four places, ...https://projects.ecoinformatics.org/ecoinfo/issues/51552010-08-18T22:53:13ZChristopher Brookscxh@eecs.berkeley.edu
<p>jianwu <<a class="email" href="mailto:jianwu@sdsc.edu">jianwu@sdsc.edu</a>> writes:</p>
<blockquote>
<p>If excluding those from building system, please make sure it's also updated for<br />eclipse building. To update it, just modify the PtolemyClasspathStart file at<br />build-area/resources/eclipse.</p>
<p>We probably also need to update corresponding files at<br />build-area/resources/netbeans and build-area/resources/idea.</p>
</blockquote>
<p>I'm mystified as to why a human has to update four locations with<br />the same data. Isn't this why we have computers?<br />I should update one master file, the Netbeans, Eclipse and Idea <br />files should be automatically updated.</p> Kepler - Bug #5081 (New): A system for adding and removing GUI menus.https://projects.ecoinformatics.org/ecoinfo/issues/50812010-07-07T17:25:27ZChristopher Brookscxh@eecs.berkeley.edu
<p>The existing system needs documentation.</p>
<p>Also, refactoring to use RCP would help here</p> Kepler - Bug #5027 (New): Users should be able to build installers for the Kepler-2.0 branchhttps://projects.ecoinformatics.org/ecoinfo/issues/50272010-05-24T17:32:46ZChristopher Brookscxh@eecs.berkeley.edu
<p>Kepler users should be able to build installers so that they may deploy<br />a shrinkwrapped installation to other users. Currently, "ant installer" <br />works in the Kepler devel trunk, but fails in the 2.0 branch.</p>
<p>[installer] Writing installer file to /Users/cxh/src/kepler-2.0/build-area/installer/install.xml<br /> [izpack] ERROR: 'The content of elements must consist of well-formed character data or markup.'<br /> [izpack] ERROR: 'com.sun.org.apache.xml.internal.utils.WrappedRuntimeException: The content of elements must consist of well-formed character data or markup.'<br /> [izpack] javax.xml.transform.TransformerException: javax.xml.transform.TransformerException: com.sun.org.apache.xml.internal.utils.WrappedRuntimeException: The content of elements must consist of well-formed character data or markup.<br /> [izpack] at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerImpl.transform(TransformerImpl.java:673)<br /> [izpack] at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerImpl.transform(TransformerImpl.java:300)<br /> [izpack] at com.izforge.izpack.adaptator.impl.XMLParser.parseLineNrFromInputSource(Unknown Source)</p>
<p>We are not currently exposing the "ant installer" command to users, so<br />this is an RFE, not a bug.</p>
<p>See bug 4994 at<br /><a class="external" href="http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4994">http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4994</a></p> Kepler - Bug #5022 (Resolved): 2.0-RC3 Windows installer creates Kepler 2.0-RC2 start menu choice...https://projects.ecoinformatics.org/ecoinfo/issues/50222010-05-20T19:52:20ZChristopher Brookscxh@eecs.berkeley.edu
<p>With the Kepler-2.0-RC3 Windows installer, the shortcut in Start->All Programs<br />->Kepler is Kepler 2.0-RC2, not Kepler-2.0-RC3.</p>
<p>Also, the icon for "Kepler 2.0-RC2" is missing, I get a default<br />icon, not the Kepler Icon.</p> Kepler - Bug #5020 (Resolved): 2.0-RC3 installer: R Kepler Module is not optionalhttps://projects.ecoinformatics.org/ecoinfo/issues/50202010-05-20T17:28:08ZChristopher Brookscxh@eecs.berkeley.edu
<p>When installing Kepler-2.0-RC3, I'm presented with<br />two choices:<br />Kepler<br />R Kepler Module</p>
<p>Both are required, I can't uncheck "R Kepler Module",<br />so why bother with this window?</p> Kepler - Bug #4996 (Resolved): 2.0-RC2 demos don't workhttps://projects.ecoinformatics.org/ecoinfo/issues/49962010-05-10T04:55:59ZChristopher Brookscxh@eecs.berkeley.eduKepler - Bug #4995 (In Progress): ant installer fails under Linuxhttps://projects.ecoinformatics.org/ecoinfo/issues/49952010-05-10T00:15:32ZChristopher Brookscxh@eecs.berkeley.edu
<p>In a clean Kepler 2.0 tree, "ant installer" fails under linux:</p>
<p>build-macapp:<br /> [echo] jarbunder<br /> [null] Deleting directory /home/cxh/src/kepler-2.0/Kepler.app<br />[jarbundler] Creating application bundle: /home/cxh/src/kepler-2.0/Kepler.app</p>
<p>BUILD FAILED<br />/home/cxh/src/kepler-2.0/build-area/build.xml:339: The following error occurred while executing this line:<br />/home/cxh/src/kepler-2.0/build-area/build.xml:370: The following error occurred while executing this line:<br />/home/cxh/src/kepler-2.0/build-area/build.xml:439: Cannot copy Java Application Stub: java.io.FileNotFoundException: /System/Library/Frameworks/JavaVM.framework/Versions/Current/Resources/MacOS/JavaApplicationStub (No such file or directory)</p>
<p>The problem is that the JavaApplicationStub file is not present under Linux.</p> Kepler - Bug #4994 (Resolved): ant installer fails with "Invalid directory 'dir' ... outreach-2.0...https://projects.ecoinformatics.org/ecoinfo/issues/49942010-05-08T03:14:26ZChristopher Brookscxh@eecs.berkeley.edu
<p>Working from the instructions at<br /><a class="external" href="https://kepler-project.org/developers/teams/build/building-kepler-installers">https://kepler-project.org/developers/teams/build/building-kepler-installers</a><br />and using Kepler-2.0 instead of the devel trunk, I have problems with<br />"ant install" </p>
<pre><code>mkdir kepler-2.0<br /> cd kepler-2.0<br /> svn co <a class="external" href="https://code.kepler-project.org/code/kepler/releases/release-branches/build-area-2.0/">https://code.kepler-project.org/code/kepler/releases/release-branches/build-area-2.0/</a> build-area<br /> cd build-area<br /> ant change-to -Dsuite=kepler-2.0<br /> ant clean-cache<br /> ant eclipse<br /> ant installer</code></pre>
<p>Fails with:<br />--start--<br />[installer] Appending packs from the outreach-2.0 module.<br />[installer] Appending packs from the r-2.0 module.<br />[installer] Appending packs from the ptolemy-8.0 module.<br />[installer] basedirPath: /Users/cxh/src/kepler-2.0<br />[installer] Filtering out non-used OS elements.<br />[installer] Writing installer file to /Users/cxh/src/kepler-2.0/build-area/installer/install.xml</p>
<p>BUILD FAILED<br />/Users/cxh/src/kepler-2.0/build-area/build.xml:337: The following error occurred while executing this line:<br />/Users/cxh/src/kepler-2.0/build-area/build.xml:361: com.izforge.izpack.compiler.CompilerException: installer/install.xml:252: Invalid directory 'dir': /Users/cxh/src/kepler-2.0/outreach-2.0.0/resources<br />--end--</p>
<p>build-area/installer/install.xml is generated by the build process and includes<br />a reference to outreach-2.0.0, which does not exist. outreach-2.0 does<br />exist.</p>
<p>See also<br /><a class="external" href="http://mercury.nceas.ucsb.edu/kepler/pipermail/kepler-users/2010-April/002154.html">http://mercury.nceas.ucsb.edu/kepler/pipermail/kepler-users/2010-April/002154.html</a></p>
<p>A test suite would help with this sort of problem.</p> Kepler - Bug #4993 (Resolved): Kepler-2.0 cannot be built under windows because of apple-extensionshttps://projects.ecoinformatics.org/ecoinfo/issues/49932010-05-08T01:47:46ZChristopher Brookscxh@eecs.berkeley.edu
<p>The instructions at<br /><a class="external" href="https://kepler-project.org/developers/teams/build/systems/build-system/extension-build-system">https://kepler-project.org/developers/teams/build/systems/build-system/extension-build-system</a><br />fail because of apple-extensions</p>
<p>If, under Windows Server 2003, I do:<br /> mkdir kepler-2.0<br /> cd kepler-2.0<br /> svn co <a class="external" href="https://code.kepler-project.org/code/kepler/releases/release-branches/build-area-2.0/">https://code.kepler-project.org/code/kepler/releases/release-branches/build-area-2.0/</a> build-area<br /> cd build-area<br /> ant change-to -Dsuite=kepler-2.0<br /> ant run</p>
<p>I get:</p>
<pre><code>[compile] Compiling apple-extensions-2.0...<br /> [compile] C:\tmp\cxh\src\kepler-2.0\build-area\build.xml:31: warning: 'includeantruntime' was not set, defaulting to build.syscl<br />asspath=last; set to false for repeatable builds<br /> [compile] Compiling 1 source file to C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\target\classes<br /> [compile] C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\src\org\kepler\osx\KeplerApplicationListener.java:50: package com.apple<br />.eawt does not exist<br /> [compile] import com.apple.eawt.ApplicationEvent;<br /> [compile] ^<br /> [compile] C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\src\org\kepler\osx\KeplerApplicationListener.java:51: package com.apple<br />.eawt does not exist<br /> [compile] import com.apple.eawt.ApplicationListener;<br /> [compile] ^<br /> [compile] C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\src\org\kepler\osx\KeplerApplicationListener.java:53: cannot find symbo<br />l<br /> [compile] symbol: class ApplicationListener<br /> [compile] public class KeplerApplicationListener implements ApplicationListener<br /> [compile] ^<br /> [compile] C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\src\org\kepler\osx\KeplerApplicationListener.java:55: cannot find symbo<br />l<br /> [compile] symbol : class ApplicationEvent<br /> [compile] location: class org.kepler.osx.KeplerApplicationListener<br /> [compile] public void handleAbout(ApplicationEvent event)<br /> [compile] ^<br /> [compile] C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\src\org\kepler\osx\KeplerApplicationListener.java:62: cannot find symbo<br />l<br /> [compile] symbol : class ApplicationEvent<br /> [compile] location: class org.kepler.osx.KeplerApplicationListener<br /> [compile] public void handleOpenApplication(ApplicationEvent event)<br /> [compile] ^<br /> [compile] C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\src\org\kepler\osx\KeplerApplicationListener.java:67: cannot find symbo<br />l<br /> [compile] symbol : class ApplicationEvent<br /> [compile] location: class org.kepler.osx.KeplerApplicationListener<br /> [compile] public void handleOpenFile(ApplicationEvent event)<br /> [compile] ^<br /> [compile] C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\src\org\kepler\osx\KeplerApplicationListener.java:72: cannot find symbo<br />l<br /> [compile] symbol : class ApplicationEvent<br /> [compile] location: class org.kepler.osx.KeplerApplicationListener<br /> [compile] public void handlePreferences(ApplicationEvent event)<br /> [compile] ^<br /> [compile] C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\src\org\kepler\osx\KeplerApplicationListener.java:77: cannot find symbo<br />l<br /> [compile] symbol : class ApplicationEvent<br /> [compile] location: class org.kepler.osx.KeplerApplicationListener<br /> [compile] public void handlePrintFile(ApplicationEvent event)<br /> [compile] ^<br /> [compile] C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\src\org\kepler\osx\KeplerApplicationListener.java:85: cannot find symbo<br />l<br /> [compile] symbol : class ApplicationEvent<br /> [compile] location: class org.kepler.osx.KeplerApplicationListener<br /> [compile] public void handleQuit(ApplicationEvent event)<br /> [compile] ^<br /> [compile] C:\tmp\cxh\src\kepler-2.0\apple-extensions-2.0\src\org\kepler\osx\KeplerApplicationListener.java:109: cannot find symb<br />ol<br /> [compile] symbol : class ApplicationEvent<br /> [compile] location: class org.kepler.osx.KeplerApplicationListener<br /> [compile] public void handleReOpenApplication(ApplicationEvent event)<br /> [compile] ^<br /> [compile] 10 errors</code></pre>
<p>BUILD FAILED<br />C:\tmp\cxh\src\kepler-2.0\build-area\build.xml:31: C:\tmp\cxh\src\kepler-2.0\build-area\build.xml:31: Compile failed; see the comp<br />iler error output for details.</p>
<p>Total time: 2 minutes 10 seconds</p>
<p>cxh@newton ~/src/kepler-2.0/build-area<br />$</p> Kepler - Bug #4992 (Resolved): In a shared installation, how does the user get the demo?https://projects.ecoinformatics.org/ecoinfo/issues/49922010-05-08T01:43:11ZChristopher Brookscxh@eecs.berkeley.edu
<p>The intro screen says</p>
<p>"All listed demos are in the KeplerData/Kepler-2.0.Demos/getting-started which can be found in your home directory."</p>
<p>In a shared installation, how does anyone other than the installer get <br />that directory?</p> Kepler - Bug #4991 (Resolved): Kepler-2.0-RC2 fails to start for a non-admin user after admin ins...https://projects.ecoinformatics.org/ecoinfo/issues/49912010-05-08T01:39:57ZChristopher Brookscxh@eecs.berkeley.edu
<p>I installed Kepler as admin under Windows 2003 and the installation works<br />fine.<br />If I try to start Kepler as a non-admin user, it appears to start up<br />and then exit?</p>
<p>Running kepler.bat as a non-admin user fails:</p>
<p>C:\PROGRA~1\Kepler-2.0-RC2>.\kepler.bat<br />Exception in thread "main" java.io.FileNotFoundException: C:\Program Files\Keple<br />r-2.0-RC2\build-area\present.txt (Access is denied)<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:105)<br /> at org.kepler.build.modules.Module.readPresent(Module.java:209)<br /> at org.kepler.build.modules.Module.transformName(Module.java:296)<br /> at org.kepler.build.modules.Module.<init>(Module.java:141)<br /> at org.kepler.build.modules.Module.<init>(Module.java:186)<br /> at org.kepler.build.modules.ModulesTxt.readHelper(ModulesTxt.java:148)<br /> at org.kepler.build.modules.ModulesTxt.read(ModulesTxt.java:120)<br /> at org.kepler.build.modules.ModulesTxt.init(ModulesTxt.java:57)<br /> at org.kepler.build.modules.ModuleTree.init(ModuleTree.java:96)<br /> at org.kepler.build.modules.ModulesTask.init(ModulesTask.java:86)<br /> at org.kepler.build.runner.Kepler.main(Kepler.java:76)<br />Caused by: java.io.FileNotFoundException: C:\Program Files\Kepler-2.0-RC2\build-<br />area\present.txt (Access is denied)<br /> at java.io.FileOutputStream.open(Native Method)<br /> at java.io.FileOutputStream.<init>(FileOutputStream.java:179)<br /> at java.io.FileOutputStream.<init>(FileOutputStream.java:131)<br /> at java.io.FileWriter.<init>(FileWriter.java:73)<br /> at org.kepler.build.UpdatePresentTxt.run(UpdatePresentTxt.java:66)<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:101)<br /> ... 10 more<br />--- Nested Exception ---<br />java.io.FileNotFoundException: C:\Program Files\Kepler-2.0-RC2\build-area\presen<br />t.txt (Access is denied)<br /> at java.io.FileOutputStream.open(Native Method)<br /> at java.io.FileOutputStream.<init>(FileOutputStream.java:179)<br /> at java.io.FileOutputStream.<init>(FileOutputStream.java:131)<br /> at java.io.FileWriter.<init>(FileWriter.java:73)<br /> at org.kepler.build.UpdatePresentTxt.run(UpdatePresentTxt.java:66)<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:101)<br /> at org.kepler.build.modules.Module.readPresent(Module.java:209)<br /> at org.kepler.build.modules.Module.transformName(Module.java:296)<br /> at org.kepler.build.modules.Module.<init>(Module.java:141)<br /> at org.kepler.build.modules.Module.<init>(Module.java:186)<br /> at org.kepler.build.modules.ModulesTxt.readHelper(ModulesTxt.java:148)<br /> at org.kepler.build.modules.ModulesTxt.read(ModulesTxt.java:120)<br /> at org.kepler.build.modules.ModulesTxt.init(ModulesTxt.java:57)<br /> at org.kepler.build.modules.ModuleTree.init(ModuleTree.java:96)<br /> at org.kepler.build.modules.ModulesTask.init(ModulesTask.java:86)<br /> at org.kepler.build.runner.Kepler.main(Kepler.java:76)</p>
<p>C:\PROGRA~1\Kepler-2.0-RC2></p>
<p>Running kepler.exe just returns.</p> Kepler - Bug #4989 (Resolved): The installer should offer to start Keplerhttps://projects.ecoinformatics.org/ecoinfo/issues/49892010-05-08T00:56:35ZChristopher Brookscxh@eecs.berkeley.edu
<p>The installer should offer to start Kepler upon completion so that<br />the user does not have to go digging for it.<br />See ptII8.0/adm/gen-8.0/ptII8_0_1_setup_windows.xml</p> Kepler - Bug #4974 (Resolved): ant run and ant force-ptolemy fail to compile an updated filehttps://projects.ecoinformatics.org/ecoinfo/issues/49742010-05-04T01:01:36ZChristopher Brookscxh@eecs.berkeley.edu
<p>In the devel tree, if I update a Ptolemy java file, then "ant run" <br />and "ant force-ptolemy" fail to compile the file.</p>
<p>I have to use "ant compile"</p>
<p>I think I reported this earlier, but I could not find a bug for it.</p>
<p>bash-3.2$ touch ../ptolemy/src/ptolemy/actor/parameters/ParameterPort.java <br />bash-3.2$ ant run<br />Buildfile: build.xml</p>
<p>compile:<br /> [compile] Compiling configuration-manager...<br /> [compile] Compiling module-manager...<br /> [compile] Compiling core...<br /> [compile] Compiling event-state...<br /> [compile] Compiling util...<br /> [compile] Compiling component-library...<br /> [compile] Compiling sms...<br /> [compile] Compiling data-handling...<br /> [compile] Compiling ssh...<br /> [compile] Compiling io...<br /> [compile] Compiling job...<br /> [compile] Compiling repository...<br /> [compile] Compiling authentication...<br /> [compile] Compiling gui...<br /> [compile] Compiling module-manager-gui...<br /> [compile] Compiling authentication-gui...<br /> [compile] Compiling ecogrid...<br /> [compile] Compiling dataturbine...<br /> [compile] Compiling opendap...<br /> [compile] Compiling actors...<br /> [compile] Compiling loader...<br /> [compile] Compiling r...<br /> [compile] Compiling apple-extensions...</p>
<p>run:<br /> [run] setting dock icon to -Xdock:icon=/Users/cxh/src/kepler/common/resources/icons/kepler-dock-icon.png<br /> [run] Set environment variable: PATH = /System/Library/Frameworks/JavaVM.framework/Versions/1.6/Commands:/Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/opt/subversion/bin:/System/Library/Frameworks/JavaVM.framework/Versions/1.5/Commands:/opt/local/bin:/opt/local/sbin:/Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/opt/subversion/bin:/System/Library/Frameworks/JavaVM.framework/Versions/1.5/Commands:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/texbin:/usr/local/texlive/2007/bin:/Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/opt/subversion/bin:/System/Library/Frameworks/JavaVM.framework/Versions/1.5/Commands:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/texbin:/usr/local/texlive/2007/bin:/usr/texbin:/usr/local/texlive/2007/bin:/Users/cxh/src/kepler/kepler/lib:/Users/cxh/src/kepler/outreach/lib:/Users/cxh/src/kepler/apple-extensions/lib:/Users/cxh/src/kepler/r/lib:/Users/cxh/src/kepler/loader/lib:/Users/cxh/src/kepler/actors/lib:/Users/cxh/src/kepler/directors/lib:/Users/cxh/src/kepler/opendap/lib:/Users/cxh/src/kepler/dataturbine/lib:/Users/cxh/src/kepler/ecogrid/lib:/Users/cxh/src/kepler/authentication-gui/lib:/Users/cxh/src/kepler/module-manager-gui/lib:/Users/cxh/src/kepler/gui/lib:/Users/cxh/src/kepler/authentication/lib:/Users/cxh/src/kepler/repository/lib:/Users/cxh/src/kepler/job/lib:/Users/cxh/src/kepler/io/lib:/Users/cxh/src/kepler/ssh/lib:/Users/cxh/src/kepler/data-handling/lib:/Users/cxh/src/kepler/sms/lib:/Users/cxh/src/kepler/component-library/lib:/Users/cxh/src/kepler/util/lib:/Users/cxh/src/kepler/event-state/lib:/Users/cxh/src/kepler/core/lib:/Users/cxh/src/kepler/common/lib:/Users/cxh/src/kepler/module-manager/lib:/Users/cxh/src/kepler/configuration-manager/lib:/Users/cxh/src/kepler/kepler-tasks/lib:/Users/cxh/src/kepler/ptolemy/lib<br /> [run] Set environment variable: R_HOME = /Library/Frameworks/R.framework/Resources<br /> [run] /Users/cxh/src/kepler<br /> [run] Found OS Extension file: /Users/cxh/src/kepler/apple-extensions/module-info/osextension.txt<br /> [run] loading OS extensions for OS Mac OS X with class org.kepler.osx.KeplerOSXExtension<br /> [run] Building Kars...<br /> C-c C-c</p>
<p>BUILD FAILED<br />/Users/cxh/src/kepler/build-area/build.xml:35: Java returned: 130</p>
<p>Total time: 10 seconds<br />bash-3.2$ ant force-ptolemy<br />Buildfile: build.xml</p>
<p>force-ptolemy:</p>
<p>BUILD SUCCESSFUL<br />Total time: 0 seconds<br />bash-3.2$ ant compile<br />Buildfile: build.xml</p>
<p>compile:<br /> [compile] Compiling ptolemy...<br /> [compile] Compiling 1 source file to /Users/cxh/src/kepler/ptolemy/target/classes<br /> [compile] Compiling configuration-manager...<br /> [compile] Compiling module-manager...<br /> [compile] Compiling core...<br /> [compile] Compiling event-state...<br /> [compile] Compiling util...<br /> [compile] Compiling component-library...<br /> [compile] Compiling sms...<br /> [compile] Compiling data-handling...<br /> [compile] Compiling ssh...<br /> [compile] Compiling io...<br /> [compile] Compiling job...<br /> [compile] Compiling repository...<br /> [compile] Compiling authentication...<br /> [compile] Compiling gui...<br /> [compile] Compiling module-manager-gui...<br /> [compile] Compiling authentication-gui...<br /> [compile] Compiling ecogrid...<br /> [compile] Compiling dataturbine...<br /> [compile] Compiling opendap...<br /> [compile] Compiling actors...<br /> [compile] Compiling loader...<br /> [compile] Compiling r...<br /> [compile] Compiling apple-extensions...</p>
<p>BUILD SUCCESSFUL<br />Total time: 11 seconds<br />bash-3.2$</p> Kepler - Bug #3898 (Resolved): update .kepler instead of removing it between versionshttps://projects.ecoinformatics.org/ecoinfo/issues/38982009-03-17T16:59:32ZChristopher Brookscxh@eecs.berkeley.edu
<p>Thanks to Qiao Huijie for pointing this out.<br />When switching between Kepler-1.0.0 and the Subversion development tree,<br />the ~/.kepler directory must be removed.<br />If it is not removed, then no actors are present in the actor browser pane.</p>
<p>I'm not sure why there is an incompatibility, but the code should detect<br />this incompatibility and prompt the user.</p>
<p>In addition, upon startup, the code should check to see if the actor browser<br />pane is empty and, if it is, prompt the user to delete their ~/.kepler <br />directory</p>
<p>Also, the developer instructions should be updated to mention removing<br />the ~/.kepler directory. I'll update the instructions.</p>