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From 01/14/2011 to 02/12/2011

02/12/2011

05:12 PM Bug #5303 (Resolved): The workflow which archive sensor data into metacat can upload data even no new data was generated
I used sensor stimulator and span to generate some data into a Dataturbine server.
Then i terminated the sensor stim...
Jing Tao
05:01 PM Bug #5218: Create sensorML string
We can create valid sensorML document and metacat can accept it.
The sensorML looks like:
<sml:SensorML
xmlns:sml="...
Jing Tao

02/11/2011

03:04 PM Bug #5302: module_dependencies column defined too short
some dbms support an unlimited length, indexed type for strings (such as 'text' type in postgres) that is a lot more ... Matt Jones
09:01 AM Bug #5302: module_dependencies column defined too short
I'd recommend not specifying the length for the VARCHAR - then it will use the maximum. Just omit the (500) or (1000)... ben leinfelder
12:36 PM Bug #5293: Deleting a report item scrolls you to top of design
I've used this more after the fix I made and it seems fine. Derik Barseghian
12:30 PM Bug #5083: possible to save a kar that loses the report layout
Yeah, seems fixed, haven't gotten this to recur, and I just tested again. Closing. Derik Barseghian
10:34 AM Bug #5252: Plotting bugs
This can either be closed or can be held open to try and improve the port dragging behavior (maybe using a naming con... Sean Riddle
10:29 AM Bug #4752: create a sensor plots gui
(In reply to comment #2)
> Thanks for the good screencast. I also played around with it and have some
> comments:
>
...
Sean Riddle

02/10/2011

12:50 PM Bug #5302 (Resolved): module_dependencies column defined too short
The v8 schema has the module_dependencies varchar column defined at 255 characters, but this is too small. This isn't... Derik Barseghian
05:31 PM Bug #5301 (Resolved): clicking on Image item Scale Property Value sometimes gives ArrayIndexOutOfBoundException
Clicking on Image item Scale Property Value sometimes gives ArrayIndexOutOfBoundException, seems to happen after chan... Derik Barseghian
04:14 PM Bug #4548: string tokens with newlines print the escape sequences
fixed at r27068. Derik Barseghian

02/09/2011

12:25 PM Bug #5299 (New): can't drag using report designer item icons
You can't drag an item from its icon, and this is the first place I think a user will try, especially since it's the ... Derik Barseghian
12:16 PM Bug #5298 (New): rendered west and east dynamic item label problems
Some problems with using west and east labels on a dynamic report item:
1) the west and east label text wraps way to...
Derik Barseghian
06:06 PM Bug #5289: Change report instance margins from transparent to white
fixed at r27060. The margins (or whatever they're called) around the report are still transparent, but I guess that's... Derik Barseghian
04:45 PM Bug #5295: Report designer panel gui simplification and spacing
finished at r27056
No longer have Show Ports and Show Relations checkboxes for Items of Interest Outline tab, giving ...
Derik Barseghian
04:20 PM Bug #5297: Workflow Run Manager - no indication of progress during preview runs download
"fixed" at r27053.
Step #3 now takes about 2s instead of 17.
Refactoring to show the preview runs as they're importe...
Derik Barseghian

02/07/2011

02:36 PM Bug #5297: Workflow Run Manager - no indication of progress during preview runs download
This bug is just for fetching data needed to build "preview" WorkflowRuns (bits from the karXML, not the kars or enti... Derik Barseghian
12:57 PM Bug #5297: Workflow Run Manager - no indication of progress during preview runs download
Derik,
When we discussed this before, I think we concluded that the search time was largely due to Kepler issuing an...
Matt Jones
12:42 PM Bug #5297 (Resolved): Workflow Run Manager - no indication of progress during preview runs download
There are currently about 131 run-kars on kepler-dev. Switching to kepler-dev from the workflow run manager for the f... Derik Barseghian
12:09 PM Bug #5296 (Resolved): Workflow Run Manager - multiple window, remote store gui refresh issue
If you have two windows open, and in both connect the WRM to the same remote repository using the dropdowns in rapid ... Derik Barseghian

02/05/2011

06:58 PM Bug #5295: Report designer panel gui simplification and spacing
Fixed the first part of this -- wrt sizing of the left panels-- at r27030.
Now need to determine if Show Ports and Sh...
Derik Barseghian
05:02 PM Bug #5295 (Resolved): Report designer panel gui simplification and spacing
'Items of Interest' doesn't get enough room, and 'Report Formatting Items' gets too much.
The checkboxes (Show Por...
Derik Barseghian

02/04/2011

03:33 PM Bug #4604: Make aesthetic changes to tagging interface
I think all these have been fixed except for tags wrapping. Derik Barseghian
03:26 PM Bug #4981: RIO pdfs don't show up in the Component Library
Adding dependency on bug#5276, since whatever we decide to do for that bug will likely affect / possibly fix this bug. Derik Barseghian
03:19 PM Bug #4136: Workflow Run Manager - date and duration search should allow single operator-less arguments
Closing, I think we've decided the desirable searches types are now covered. Date search allows a single date without... Derik Barseghian
02:10 PM Bug #5276: component search performance is poor
Discussed this with Jing. We think the schema is too loose right now, and we should change it so that we can rely on ... Derik Barseghian
01:27 PM Bug #5276: component search performance is poor
just reformatting jing's above example as we discuss it:
<document>
<docid>878.72.1</docid>
<docname>kar</docname>...
Derik Barseghian
01:20 PM Bug #5276: component search performance is poor
<?xml version="1.0"?>
<resultset>
<pagestart>0</pagestart>
<pagesize>0</pagesize>
<nextpage>1</nextpage>
<pre...
Jing Tao
01:17 PM Bug #5229: Poor component search performance
duplicated bug Jing Tao
06:22 PM Bug #5293: Deleting a report item scrolls you to top of design
basically fixed with r26988, but not quite satisfied with the location you're scrolled to when you delete an item. lo... Derik Barseghian
05:12 PM Bug #5293 (Resolved): Deleting a report item scrolls you to top of design
This is really annoying when you're trying to delete items from a long report design; with each delete you lose your ... Derik Barseghian
05:09 PM Bug #5088: Report designer gui difficult to use with greater than about 3-4 items
fixed at r26960 Derik Barseghian

02/03/2011

05:13 PM Bug #4544: Enter key in Report Designer title invokes a search
fixed at r26896. This took awhile to track down. Turns out the searchButton was the set defaultButton for the jRootPa... Derik Barseghian

02/02/2011

01:12 PM Bug #4753: create gui for scheduled execution of sensor workflows on server
This a general bug. The specific bugs have been created and fixed. Jing Tao
01:11 PM Bug #5236: The list on the left panel of the scheduler should only show WF objects that can be scheduled.
Bug is fixed base the solution on comment 1. If we have any new suggestion, we can open another bug. Jing Tao
01:09 PM Bug #5235: Scheduler GUI can schedule any wf (even local ones).
When user tries to schedule a local workflow, it will be uploaded to the saving repository first. The functionality i... Jing Tao
01:08 PM Bug #4754: update metacat workflow execution scheduler
the scheduler server code stands alone in svn. We create scheduler-gui module in kepler Jing Tao
12:03 PM Bug #5283: UI for saving workflows as xml is confusing
The main problem is that currently KARs are not backwards-compatible (see bug 5280), and so XML remains the preferred... Daniel Crawl
11:57 AM Bug #4483: Module dependencies in MoML files
We no longer write any module dependency info into the moml, but certain things from modules may still be written int... Derik Barseghian
11:34 AM Bug #5290 (New): originModule not always set
The <originModule> property is added to configuration files so that properties will be ignored when their originating... Daniel Crawl
11:26 AM Bug #5247: Allow user to set memory allocated to Kepler from within Kepler
This does not work when using kepler.sh.
Additionally, it appears the settings are saved in build-area/settings/memo...
Daniel Crawl
06:21 PM Bug #5289 (In Progress): Change report instance margins from transparent to white
At some point some months ago, I noticed report pdfs having transparent, instead of white, backgrounds, which make th... Derik Barseghian
05:43 PM Bug #4544: Enter key in Report Designer title invokes a search
Retargeting, I want this fixed. Derik Barseghian
05:40 PM Bug #5088: Report designer gui difficult to use with greater than about 3-4 items
Imo this seriously degrades the reporting user experience, retargeting. Derik Barseghian
05:29 PM Bug #4755: update workflow run manager and reporting to display runs of sensor workflows
WRM now shows allows you to view remote runs and associated report artifacts. Derik Barseghian
05:25 PM Bug #5062: create bugs, mockups, eng view page updates showing how authentication will work
These mockups never got made, but authenticating for the scheduler and the WRM is done now. Both use the authenticati... Derik Barseghian
05:20 PM Bug #5032: Workflow Run Manager - ability to connect to different prov stores from gui actions
Closing, this is basically all done now. Any issues for the WRM wrt remote stores can be opened as new bugs. Derik Barseghian
05:11 PM Bug #5033: Workflow Run Manager - Allow multiple instances of WRM in one Kepler instance
Closing Derik Barseghian
05:06 PM Bug #5049: Prompt for credentials when connecting to remote kepler server
I removed the authenticate checkbox at r26873. Now like Component search you're just prompted to login (if you're not... Derik Barseghian
04:42 PM Bug #5083: possible to save a kar that loses the report layout
Re: comment#3, stopgap no longer seems necessary -- I commented it out and tested the scenario in the bug description... Derik Barseghian

02/01/2011

03:06 PM Bug #5017: ReportLayout LSID and referral list should be maintained
I'm having trouble understanding the "problem" described in comment#15 at this point, so I'll just trust my comment#1... Derik Barseghian
03:02 PM Bug #5009: Opening two KARS that have the same Workflow, but that have different report layouts, will make the first layout refresh itself with the layout from the KAR that was opened most recently.
I merged a long time ago, just tested on trunk and works. Derik Barseghian
06:20 PM Bug #5248: downloading non-public kars from Search Components doesn't work
Jing patched the kepler repository tonight, and Component search against the kepler repository works. Closing. Derik Barseghian
06:05 PM Bug #5061: Report Design Panel needs fixing wrt event listening
I merged this fix a long time ago. Double checked with a few textareas tests on trunk just now. Works. Derik Barseghian
06:02 PM Bug #4524: no prompt to save a changed report
I merged a long time ago. Just tried and works on trunk, closing. Derik Barseghian
05:54 PM Bug #5091: Dragging and dropping report layout items NPEs
This seems to be caused by dragging a report layout item over a text-area. Derik Barseghian
04:07 PM Bug #5252: Plotting bugs
I have fixed items 1-4. 5 is sort of fixed; ports of definitely the wrong type (ie. (double for timestamp, double for... Sean Riddle

01/31/2011

03:52 PM Bug #5287 (Resolved): Remove the override of ActorMetadataKAREntryHandler
Currently, the fix to bug 5251 is implemented in the form of an override to org.kepler.kar.handlers.ActorMetadataKARE... Sean Riddle
02:37 PM Bug #5286 (Resolved): Remove the override of EntityTreeModel
Currently, the class ptolemy.vergil.tree.EntityTreeModel is being overridden in sensor-view. This is to allow it to s... Sean Riddle
02:29 PM Bug #5272: kepler 2.1 suite can not be started using 'ant run'
Fixed.
The trunk build can now run the kepler-2.1 branch.
I also branched the build (to build-area-2.1) so that we ...
David Welker
02:28 PM Bug #5251: using File->Open MoML... always opens model into Sensor Site view
Fixed in r26872.
Note: This is fixed with an override of the class org.kepler.kar.handlers.ActorMetadataKAREntryHand...
Sean Riddle
02:00 PM Bug #5285 (New): NPE on restart using newly created suite
User reports being unable to restart with their own suite that depends on the provenance suite:
"Debugging shows m...
Derik Barseghian
01:13 PM Bug #5129: adding and removing configuration properties could be made easier
I have sent an email to kepler-dev to get responses from people who have made configuration changes since Kepler 2.1.... David Welker
01:07 PM Bug #5282: Documentation updates for 2.2
Not doing a huge documentation review for 2.2. In the future, changes that affect the user experience and therefore t... David Welker
12:06 PM Bug #5049: Prompt for credentials when connecting to remote kepler server
Prompting for credentials when connecting a WRM to a remote kar-store happens now, if the user has selected the 'auth... Derik Barseghian
12:03 PM Bug #5132: Connecting Workflow Run Manager to remote KAR store should prompt for credentials
Marking duplicate of bug#5049 Derik Barseghian

01/29/2011

06:28 PM Bug #5232: unable to open KARs saved beneath absent (e.g. third party) modules
Fixed at r26866.
ImportModuleDependenciesAction dialogs now offer a Force Open option.
Derik Barseghian
06:06 PM Bug #5272: kepler 2.1 suite can not be started using 'ant run'
Increasing importance, this has been getting in my way, and is likely to come up again soon for the two users who hav... Derik Barseghian

01/28/2011

02:00 PM Bug #5277: remove test servers from Sources preferences
Done at r26860. Derik Barseghian
09:37 AM Bug #5284 (New): Set uploadToServer to be true at configuration.xml
When we set up kepler run engine, we always have to change the value from false to true. Why we set it to be false? I... Jing Tao

01/27/2011

01:49 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
I did work on this for bug#5099 . Attempting to open a kar with unsatisfied mod deps now prompts the user to download... Derik Barseghian
12:26 PM Bug #5120: Provide a toggle for automatic updates
David implemented a toggle for checking for patches on startup, should this be closed now? Was a conclusion reached w... Derik Barseghian
05:01 PM Bug #5248: downloading non-public kars from Search Components doesn't work
So we don't forget: the changes to always use authenticated query and gets necessitate a fix to an xslt file --Jing f... Derik Barseghian

01/26/2011

01:57 PM Bug #5272: kepler 2.1 suite can not be started using 'ant run'
Another user tried to build kepler execution eninge base on kepler-2.1
but he get the same error.
Jing Tao
11:32 AM Bug #5283: UI for saving workflows as xml is confusing
We discussed this extensively before 2.1. My 2 cents:
The main issue is that the xml format is incomplete and does ...
Matt Jones
11:24 AM Bug #5283 (Resolved): UI for saving workflows as xml is confusing
The following comments were relayed to me by a group of users running Kepler 1.0, and trying 2.x for the first time:
...
Daniel Crawl
11:31 AM Bug #5129: adding and removing configuration properties could be made easier
I'm reopening this -- now that this directive solution has been implemented, someone needs to utilize it to update th... Derik Barseghian
11:23 AM Bug #5282 (Resolved): Documentation updates for 2.2
Docs need to be updated for 2.2 Derik Barseghian
11:19 AM Bug #5281 (New): cannot open 1.0 KARs
KARs created in Kepler 1.0 cannot be opened.
An example is 04-HelloWorld.kar in the outreach module:
[run] WARN...
Daniel Crawl
11:18 AM Bug #5280 (Resolved): missing command line execution for KAR files
KAR files cannot be used with kepler.sh.
The workflow in a KAR cannot be run with any of the -gui/-nogui, -cache/-...
Daniel Crawl
11:14 AM Bug #5279 (Resolved): HSQL databases use default account
The HSQL databases should not use the default account name and password. Daniel Crawl
11:12 AM Bug #5278 (Resolved): HSQL database is shared between users
Kepler starts an HSQL database server so that multiple instances of Kepler can run on the same machine. (For more inf... Daniel Crawl
04:49 PM Bug #5277 (Resolved): remove test servers from Sources preferences
Before release we need to remove the test server options from Components and Data search. Derik Barseghian
04:30 PM Bug #4430: hsql database name and port in Kepler should be configurable
The ports and names are set in the configuration files:
common/resources/configurations/configuration.xml
core/resou...
Daniel Crawl
04:15 PM Bug #5276: component search performance is poor
Components search can also fail because of a java.lang.OutOfMemoryError. Here are two examples stacktraces
searching...
Derik Barseghian

01/25/2011

03:33 PM Bug #5248: downloading non-public kars from Search Components doesn't work
no-frills fix in r26836.
Going to test/talk with jing and matt before closing.
Derik Barseghian

01/24/2011

02:37 PM Bug #5274: Trying to schedule workflow with report layout puts up prompt about no report layout
The problem is when kepler evaluated the type in a kar entry, it used "equals" "ReportLayout". When we uses "contains... Jing Tao
02:21 PM Bug #5276 (New): component search performance is poor
Searching for remote KARs through the Components pane is very slow -- search downloads and deals with karXML, each ge... Derik Barseghian
02:10 PM Bug #5248: downloading non-public kars from Search Components doesn't work
Discussed with Matt, I'll take this one. Derik Barseghian
10:29 AM Bug #4324: ptII/module-info/revision.txt not being updated
I also added the same information as above to the Kepler Project wiki: https://kepler-project.org/developers/referenc... Sean Riddle
10:25 AM Bug #4324: ptII/module-info/revision.txt not being updated
A cron job has been started on lore.genomecenter.ucdavis.edu to run 'ant validate-ptolemy' every midnight. The revisi... Sean Riddle

01/21/2011

01:07 PM Bug #5275: Executing sensor-view workflow records provenance
Works. On import provenance turns off, and attempting to turn it back on, even during execution of sensor workflow, i... Derik Barseghian
12:34 PM Bug #5275: Executing sensor-view workflow records provenance
Should be fixed. Derik, please check. Daniel Crawl

01/20/2011

09:11 PM Bug #5248: downloading non-public kars from Search Components doesn't work
A) I don't believe it makes sense to have non-public entries showing up in the public searches. I can see how this er... ben leinfelder
06:07 PM Bug #5248: downloading non-public kars from Search Components doesn't work
My changes in r26708 are probably worth looking at when looking at this bug. Derik Barseghian

01/19/2011

03:37 PM Bug #5275 (Resolved): Executing sensor-view workflow records provenance
Executing a sensor view workflow isn't supposed to record data to provenance because the director is DE.
Replicate...
Derik Barseghian
03:01 PM Bug #5153: Save As... closes all windows associated with a workflow
Pushing further investigation on this enhancement to 2.3. As reported by Aaron, this does not appear to be a current ... David Welker
01:08 PM Bug #5263: failure to restart after upgrade from 2.0 to 2.1
Added documentation. This should not be a problem going forward, due to a change in how the module manager works. David Welker
12:44 PM Bug #4801: out of memory
Postponing to 2.3. David Welker
12:43 PM Bug #5249: test kepler for memory leaks
Postponing to 2.3. David Welker
12:43 PM Bug #4642: memory usage & slowdowns
Postponing to 2.3. David Welker
12:41 PM Bug #5258: kepler start exception when soft links are in KeplerData/workflows/MyWorkflows
Since this is an obscure problem that isn't likely to occur in the normal use of Kepler, postponing. David Welker
12:27 PM Bug #5272: kepler 2.1 suite can not be started using 'ant run'
It might not be a block for kepler 2.2 installation package release. But many users download kepler based on release-... jianwu jianwu

01/17/2011

05:43 PM Bug #5129: adding and removing configuration properties could be made easier
I have added the ability to make what I call add directives. For example, in a module, if you add a new folder called... David Welker

01/14/2011

02:56 PM Bug #5219: problems when semantically annotating or tagging a composite actor
This is expected behavior. The tag bar displays all tags on the top-level
workflow. The semantic annotation pane, how...
Sean Riddle
02:47 PM Bug #4988: Instantiating a wf as a composite that has a tag doesn't work as expected
(In reply to comment #0)
> However if I tag a workflow, Save Archive it into my local repo workflows
> folder, then f...
Sean Riddle
08:43 AM Bug #5272: kepler 2.1 suite can not be started using 'ant run'
I will look into this bug soon. However, it certainly is not a release blocker for 2.2. Reclassifying. David Welker
 

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