Kepler: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362008-04-30T15:19:49ZEcoinformatics Redmine
Redmine Bug #3253 (Resolved): IzPack Windows Installer should install in a directory with the version numberhttps://projects.ecoinformatics.org/ecoinfo/issues/32532008-04-30T15:19:49ZChristopher Brookscxh@eecs.berkeley.edu
<p>The installer should install in a directory that contains the<br />version number of the release. <br />Under Windows, the default is c:\Program Files\Kepler,<br />it should be c:\Program Files\Kepler\1.0.0.</p>
<p>The reason is so that it is possible to have multiple versions<br />of Kepler without changing the default path. If the user<br />already has an installation of Kepler, then if they overwrite<br />the old version, will "good things" happen?</p>
<p>In a similar fashion, the installer should create separate<br />menus for each version.<br />What we have now is :<br />Start -> All Programs -> Kepler -> Kepler-1.0.0<br />Start -> All Programs -> Kepler -> Kepler Uninstaller<br />Instead, we should have:<br />Start -> All Programs -> Kepler -> Kepler-1.0.0 -> Kepler-1.0.0<br />Start -> All Programs -> Kepler -> Kepler-1.0.0 -> Kepler-1.0.0 Uninstaller</p>
<p>This is just my opinion, feel free to ignore.</p> Bug #3252 (Resolved): Ptolemy ack in installer splash screen has typos and was outdatedhttps://projects.ecoinformatics.org/ecoinfo/issues/32522008-04-30T15:13:44ZChristopher Brookscxh@eecs.berkeley.edu
<p>In the Kepler 1.0.0 IzPack installer splash screen, there is a<br />missing "S" and an extra </p> in the Ptolemy support statement:</p>
<p>Ptolemy receives support in part from the Center for Hybrid and Embedded<br />oftware Systems (CHESS) at UC Berkeley, which receives support from the<br />^ Missing S</p>
<p>Hewlett Packard, Infineon, Microsoft, and Toyota.</p><br /> ^</p>
<p>I updated kepler/README.txt in the devel and release branch with new text. To close this, a new installer would need to be made and<br />the text checked.</p> Bug #3133 (Resolved): R is not added to the pathhttps://projects.ecoinformatics.org/ecoinfo/issues/31332008-02-05T21:50:17ZChad Berkleyberkley@nceas.ucsb.edu
<p>The errors cxh got with R seem to be coming from the fact that R is installed, but not put into the path on windows. I'm trying to figure out how to do that with IzPack right now.</p> Bug #3083 (Resolved): Need sample CommandLine workflows for Windowshttps://projects.ecoinformatics.org/ecoinfo/issues/30832008-01-22T19:29:33ZDan Higginshiggins@nceas.ucsb.edu
<p>We need some simple examples of how to use the CommandLine actors especially for Windows systems. These should be in the Demos directory. They should be annotated so that typical non-programmer can understand how to use commandline applications to launch external applications within Kepler.</p>
<p>Dan Higgins - Jan 2008</p> Bug #3052 (Resolved): Installer crashes with EXC_BAD_ACCESShttps://projects.ecoinformatics.org/ecoinfo/issues/30522008-01-04T00:58:38ZDavid Brooksdave@bcs.co.nz
<p>Here's the start of the crash log:</p>
<p>Host Name: djbmac<br />Date/Time: 2008-01-04 13:20:10.617 +1300<br />OS Version: 10.4.11 (Build 8S2167)<br />Report Version: 4</p>
<p>Command: Kepler_beta3_install<br />Path: /Users/dave/Desktop/Kepler_beta3_install.app/Contents/MacOS/Kepler_beta3_install<br />Parent: WindowServer [57]<br />Rosetta: Yes</p>
<p>Version: ??? (5.0)</p>
<p>PID: 9484<br />Thread: Unknown</p>
<p>Exception: EXC_BAD_ACCESS (0x0001)<br />Codes: KERN_PROTECTION_FAILURE (0x0002) at 0x00000000</p>
<p>Thread 0:<br />0 Kepler_beta3_install 0xb80a564f 0xb8000000 + 677455<br />1 Kepler_beta3_install 0xb809fb15 0xb8000000 + 654101<br />2 Kepler_beta3_install 0xb80bd72e 0xb8000000 + 775982<br />3 Kepler_beta3_install 0xb811e403 spin_lock_wrapper + 1985</p>
<p>Thread 1:<br />0 Kepler_beta3_install 0xb822fa6b strchr + 72<br />1 Kepler_beta3_install 0xb81cb487 pthread_cond_wait + 3114<br />2 Kepler_beta3_install 0xb816765e catch_exception_raise_state_identity + 318<br />3 Kepler_beta3_install 0xb8166b9a CallPPCFunctionAtAddressInt + 177124<br />4 Kepler_beta3_install 0xb8166a91 CallPPCFunctionAtAddressInt + 176859<br />5 Kepler_beta3_install 0xb816775c catch_exception_raise_state_identity + 572<br />6 Kepler_beta3_install 0xb8200c00 pthread_create + 1124</p>
<p>Unknown thread crashed with i386 Thread State:<br />eax: 0x00000000 ebx: 0xb80a5628 ecx:0x00000000 edx: 0x00000003<br />edi: 0x00000000 esi: 0x80d03660 ebp:0xb7fff9f8 esp: 0xb7fff9c0<br /> ss: 0x0000001f efl: 0x00010206 eip:0xb80a564f cs: 0x00000017<br /> ds: 0x0000001f es: 0x0000001f fs:0x00000000 gs: 0x00000037</p> Bug #3020 (Resolved): Exporting an actor to a kar does not include internal jarshttps://projects.ecoinformatics.org/ecoinfo/issues/30202007-11-29T22:59:34ZDan Higginshiggins@nceas.ucsb.edu
<p>It is now possible to include jars with class files needed by an actor inside a kar file. One can add these kars to the kar/actors/ directory or load them from the File/Import Archive menu. Note that these kar files are currently created by 'hand' and are of use in inserting new actors without rebuilding all of Kepler.</p>
<p>However, if one tries to create a kar from an actor in the work area, the jar information is lost! That seems to be because the kar is built only from the moml of the display which does not know that a kar for the actor already exists! (I think the same problem occurs when Uploading to the Registry.)</p>
<p>The menu action to create a kar should check to see if a kar already exists and modify it as necessary. Or an additional dialog should appear that allow the user to add various resources to the created kar.</p> Bug #2978 (Resolved): saving to actor library from kepler no longer consistently works and port i...https://projects.ecoinformatics.org/ecoinfo/issues/29782007-10-08T23:40:11ZShawn Bowersbowers@gonzaga.edu
<p>It appears as though some new issues have cropped up w.r.t. the kepler actor library, in particular:</p>
<p>- when actors are added to the library from the canvas, they sometimes do not appear in the library, sometimes require a change in another actor to appear, and sometimes require kepler to be restarted to appear. I haven't nailed down exactly what sequence of events are causing this / needed to make an actor show up.</p>
<p>- input/output port properties are no longer saved when an actor is saved to a library (and dragged back to the canvas). This includes port data types as well as port semantic types. The same holds (i.e., port information is lost) when an actor is built via buildkarlib as well.</p>
<p>- the actor library interface appears to have changed, e.g., calling entityList() returns a null pointer (it seems ...)</p>
<p>The above behavior occurs on a fresh cvs checkout ...</p>
<p>Thanks,<br />-shawn</p> Bug #2935 (Resolved): MetadataSource actor has no documentationhttps://projects.ecoinformatics.org/ecoinfo/issues/29352007-09-04T20:43:46ZDan Higginshiggins@nceas.ucsb.edu
<p>No documentation appears for the MetadataSource actor (although info is inside the source). Also need info on account info (access control addition needed?)</p> Bug #2840 (Resolved): Kepler beta3 will not run on Mac OSX10.3https://projects.ecoinformatics.org/ecoinfo/issues/28402007-05-14T18:03:27ZDan Higginshiggins@nceas.ucsb.edu
<p>Kepler 10.3 will not run under Mac OSX 10.3 (but does on Mac OSX 10.4). Kepler beta2 does work OK!<br /> It looks like the problem is due to the lack of Java 1.5 on OSX 10.3. The installer is set to use Java 1.4+. If we force it to use '1.4' (no plus) it no longer works under OSX 10.4. Looks like it was compiled under Java 1.5 and has a problem running under 1.5.</p> Bug #2833 (Resolved): 'Open' problem with new DarwinCoreDataSource actorhttps://projects.ecoinformatics.org/ecoinfo/issues/28332007-04-30T21:51:26ZDan Higginshiggins@nceas.ucsb.edu
<p>Recently, the DarwinCoreDataSource actor was updated to allow species names to be input during workflow execution rather than having to drag a source to the work area from the Data tab by hand. This included removing the datadownload when the actor is first dropped in the work area and putting it into the 'fire' method.</p>
<p>This creates the problem that immediately after a DarwinCoreDataSource actor is dragged to the work area from the actor list or the data tab, one cannot 'Open Actor' from the right click window because the metadata for the QueryBuilder has not been downloaded yet! (A QueryBuilder error message appears.) After the actor has been fired once, then the QB can be opened.</p>
<p>Need to get the 'Open Actor' menu command to inialize things if actor has never been fired!</p> Bug #2817 (Resolved): kepler-1.0.0beta3.exe not finding valid java installhttps://projects.ecoinformatics.org/ecoinfo/issues/28172007-04-11T03:06:56ZTerry Rankineterry.rankine@csiro.au
<p>firstly there is no 1.0.0.beta3 category.</p>
<p>secondly, the installer with out the jvm, <a class="external" href="http://kepler-project.org/dist/kepler-1.0.0beta3.exe">http://kepler-project.org/dist/kepler-1.0.0beta3.exe</a><br />does not detect my valid java 6 install</p>
<p>"could not find a valid java virtual machine to load"</p>
<p>C:\Documents and Settings\ran110>java -version<br />java version "1.6.0" <br />Java(TM) SE Runtime Environment (build 1.6.0-b105)<br />Java HotSpot(TM) Client VM (build 1.6.0-b105, mixed mode)<br />C:\Documents and Settings\ran110>echo <span>JAVA_HOME</span><br />C:\Program Files\Java\jdk1.6.0</p>
<p>the kepler.bat works fine.</p> Bug #2426 (Resolved): Search for 'image' in actor tree 'hangs' window in nightly buildhttps://projects.ecoinformatics.org/ecoinfo/issues/24262006-04-25T17:22:32ZDan Higginshiggins@nceas.ucsb.edu
<p>A search for 'image' in the actor tab 'hangs' the window when one is using the nightly zipped version; message is<br />Uncaught error fetching image:<br />java.lang.NullPointerException<br /> at sun.awt.image.URLImageSource.getConnection(Unknown Source)<br /> at sun.awt.image.URLImageSource.getDecoder(Unknown Source)<br /> at sun.awt.image.InputStreamImageSource.doFetch(Unknown Source)<br /> at sun.awt.image.ImageFetcher.fetchloop(Unknown Source)<br /> at sun.awt.image.ImageFetcher.run(Unknown Source)</p>
<p>But when using ant and launching using 'ant run-dev' a search for 'image' works!<br />Perhaps this is due to the way the path is setup?</p>
<p>Need to determine if this problem occurs for installer version</p> Bug #2319 (Resolved): Ptolemy build problemshttps://projects.ecoinformatics.org/ecoinfo/issues/23192005-12-15T23:18:02ZDan Higginshiggins@nceas.ucsb.edu
<p>Currently kepler uses 'ant ptolemy' to compile PtolemyII source code. Some<br />source code is just ignored (skipped) if it doesn't compile and isn't directly<br />used by Kepler. Often this problem is handled in PT by config/make dynamic<br />configuration of files.<br /> We should make the ant ptolemy build 'smarter' to handle some of the dynamic<br />build problems (e.g Java 3D samples).</p> Bug #2316 (Resolved): Conflicting jars and classpath reductionhttps://projects.ecoinformatics.org/ecoinfo/issues/23162005-12-12T22:57:11ZKevin Rulandkruland@ku.edu
<p>The current collection of jars in the lib/ directory includes many jars which<br />may not be used, many duplicated jars, and probably some conflicting jars. We<br />need to perform analysis to determine the dependencies among the jars and<br />determine which jars are required by which kepler sources (actors and base code).</p> Bug #1334 (Resolved): need installer for keplerhttps://projects.ecoinformatics.org/ecoinfo/issues/13342004-02-09T16:53:43ZChad Berkleyberkley@nceas.ucsb.edu
<p>We need a user friendly installer for Kepler. We could possibly use<br />installanywhere or a similar commercial product to produce the installer. it<br />would be nice if the creation of the installer is automated into the ant build<br />process so that it's easy to create releases. This needs to be done by the SEEK<br />meeting in EDI May 8.</p>