Kepler: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362010-02-18T19:49:26ZEcoinformatics Redmine
Redmine Bug #4807 (Resolved): GetMetadata does nothinghttps://projects.ecoinformatics.org/ecoinfo/issues/48072010-02-18T19:49:26ZOliver Soongsoong@nceas.ucsb.edu
<p>Search for any data, right click on a search result, and select the only option, "GetMetadata". This does not seem to do anything, and there are no errors on the console. There should probably also be a space in the label as well.</p> Bug #4805 (Resolved): searching for data gives an NPEhttps://projects.ecoinformatics.org/ecoinfo/issues/48052010-02-17T23:52:15ZOliver Soongsoong@nceas.ucsb.edu
<p>I searched for Kruger on both KNB and DEV using both authenticated and unauthenticated searches. I authenticated as necessary, and I got an NPE:</p>
<p>java.lang.NullPointerException<br /> at ptolemy.vergil.basic.KeplerDocumentationAttribute.createInstanceFromExisting(KeplerDocumentationAttribute.java:195)<br /> at org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource.generateDocumentationForInstance(Eml200DataSource.java:1070)<br /> at org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification.transformResultset(EML2MetadataSpecification.java:252)<br /> at org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification.addResultsetRecordsToContainer(EML2MetadataSpecification.java:406)<br />ERROR (org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource:generateDocumentationForInstance:1078) error encountered whilst generating default documentation for actor instance: null</p> Bug #4671 (Resolved): cannot export workflow runs when workflow has actors with <> in the nameshttps://projects.ecoinformatics.org/ecoinfo/issues/46712010-01-15T01:25:58ZOliver Soongsoong@nceas.ucsb.edu
<p>Title says it all. This is at r22494.</p> Bug #4654 (Resolved): searching KNB through Kepler returns many console errors and caching failshttps://projects.ecoinformatics.org/ecoinfo/issues/46542010-01-08T01:44:18ZOliver Soongsoong@nceas.ucsb.edu
<p>This is at r22407 under linux. Things seem to work, but the cache content is all blank (files are all of size 0).</p> Bug #4653 (Resolved): error message says "data cloumn"https://projects.ecoinformatics.org/ecoinfo/issues/46532010-01-08T01:13:53ZOliver Soongsoong@nceas.ucsb.edu
<p>The data cloumn didn't match head column</p> Bug #4652 (Resolved): clicking rows in the wrm no longer updates the report designer/viewerhttps://projects.ecoinformatics.org/ecoinfo/issues/46522010-01-08T00:55:38ZOliver Soongsoong@nceas.ucsb.edu
<p>If I have multiple entries in the wrm and I click on different rows, the report designer and viewer no longer automatically update their views. This is at r22407 under linux.</p> Bug #4634 (Resolved): run archive causes NPE when building local repositoryhttps://projects.ecoinformatics.org/ecoinfo/issues/46342009-12-15T04:19:58ZOliver Soongsoong@nceas.ucsb.edu
<p>Start Kepler from a clean-cache. I'm at r22183. Move the example to the default workflows folder and re"Build" the components tree. I get an NPE:</p>
<p>java.lang.NullPointerException<br /> at org.kepler.objectmanager.ObjectManager.getHighestObjectRevision(ObjectManager.java:241)<br /> at org.kepler.util.WorkflowRun.createWorkflowRunCacheObject(WorkflowRun.java:584)<br /> at org.kepler.util.WorkflowRun.cache(WorkflowRun.java:986)<br /> at org.kepler.kar.KARFile.cache(KARFile.java:841)<br /> at org.kepler.kar.KARFile.cacheKARContents(KARFile.java:567)<br /> at org.kepler.kar.KARCacheManager.synchronizeKARCacheWithLocalRepositories(KARCacheManager.java:352)</p> Bug #4626 (Resolved): NPE when saying "yes" to adding a semantic type while saving a KARhttps://projects.ecoinformatics.org/ecoinfo/issues/46262009-12-11T02:27:34ZOliver Soongsoong@nceas.ucsb.edu
<p>I'm at r22155. File->Save Archive (KAR) and answer yes to adding a semantic type. I'm getting an NPE.</p>
<p>Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException<br /> at sun.misc.MetaIndex.mayContain(MetaIndex.java:225)</p> Bug #4615 (Resolved): pdfs missing from run archiveshttps://projects.ecoinformatics.org/ecoinfo/issues/46152009-12-09T02:21:36ZOliver Soongsoong@nceas.ucsb.edu
<p>It's looking like PDFs are no longer found in run archives like they used to be. I'm at r22136.</p> Bug #4614 (Resolved): right click -> Open on an existing run adds an entry to the wrmhttps://projects.ecoinformatics.org/ecoinfo/issues/46142009-12-09T02:20:21ZOliver Soongsoong@nceas.ucsb.edu
<p>I run a workflow, then right click on its run record and select open. When the new window opens, there is another entry in the wrm with duration 0. It can be opened (adding yet another entry with duration 0).</p>
<p>This seems wrong.</p> Bug #4608 (Resolved): ROML in KAR files not being shown at allhttps://projects.ecoinformatics.org/ecoinfo/issues/46082009-12-08T20:10:55ZOliver Soongsoong@nceas.ucsb.edu
<p>ROML in KAR files is not being loaded. This happens regardless of the LSID in the workflow and ROML matching the InstanceAuthNamespace. This happens regardless of opening from a local repository or not.</p>
<p>This is happening at 22117, but I think I also saw it at 22111. I'm guessing it has something to do with 22083, although I can't be sure.</p> Bug #4540 (Resolved): authentication problems with dev.nceas.ucsb.eduhttps://projects.ecoinformatics.org/ecoinfo/issues/45402009-11-10T18:42:02ZOliver Soongsoong@nceas.ucsb.edu
<p>If I start Kepler and open a workflow that accesses the dev metacat, I get some error messages and this on the console:</p>
<p>ERROR (org.ecoinformatics.seek.datasource.EcogridDataCacheItem:getDataItemFromEcoGrid:330) EcogridDataCacheItem - error connecting to Ecogrid<br />AxisFault<br /> faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException<br /> faultSubcode:<br /> faultString: java.rmi.RemoteException: Please specify an identifier</p>
<p>The DEV server no longer shows up in my data sources list.</p> Bug #4521 (Resolved): KNB data error checking is overly aggressivehttps://projects.ecoinformatics.org/ecoinfo/issues/45212009-11-04T01:03:36ZOliver Soongsoong@nceas.ucsb.edu
<p>On r21314, I can no longer access the Kruger data. I believe this is due to some overly aggressive error checking on the data. The data packages (which are not directly under my control) have thrown errors on the console. I think this is due to negative numbers and zeroes in columns that are nominally whole numbers. In the past, there were non-fatal, but this is now major problem.</p>
<p>This change happened somewhere between r21218 and r21310.</p>
<p>The error message is specifically "Unable to parse the MetaData: Error parsing the eml package: Exception in DataTypeResolver"</p> Bug #4184 (Resolved): EML 2 Dataset disregarding selectedEntity from XMLhttps://projects.ecoinformatics.org/ecoinfo/issues/41842009-06-25T01:12:44ZOliver Soongsoong@nceas.ucsb.edu
<p>1. Drag an EML 2 Dataset actor onto the canvas and change the selectedEntity field from the initial value.<br />2. Save the workflow<br />3. Close and re-open the workflow<br />4. The selectedEntity value should be the initial value again.</p> Bug #4142 (Resolved): EML 2 Dataset caches restricted datasets, allows access across sessionshttps://projects.ecoinformatics.org/ecoinfo/issues/41422009-06-09T19:05:42ZOliver Soongsoong@nceas.ucsb.edu
<p>I authenticated to search and add an EML 2 Dataset actor for a restricted data table. If I save the workflow, close Kepler, and re-open, I can run the workflow and access the data without authenticating. This seems slightly unsafe, although it may be intended.</p>