Kepler: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362008-02-29T19:40:04ZEcoinformatics Redmine
Redmine Bug #3169 (Resolved): Cannot add documentation to a new actor from within Keplerhttps://projects.ecoinformatics.org/ecoinfo/issues/31692008-02-29T19:40:04ZDan Higginshiggins@nceas.ucsb.edu
<p>If one instantiates a new actor, it can be added to the library or saved as a KAR, but there is no way to add documentation from within Kepler!</p>
<p>If there is no current documentation, the Documentation/Customize menu item does nothing. So there is no way to add documentation other than adding it directly to the actor moml.</p>
<p>Dan HIggins - 29 Feb 2008</p> Bug #3026 (Resolved): Actor documentation does not appear in older workflowshttps://projects.ecoinformatics.org/ecoinfo/issues/30262007-12-12T23:32:19ZDan Higginshiggins@nceas.ucsb.edu
<p>Attempting to get actor documentation does not work in several of the older workflows, especially some in the demos directory. This is apparently due the fact that documentation is now saved inside kar files. This was changed after some existing workflows were created. They need to be rebuilt so that documentation will be added to the moml file for the workflow. (The documetation does show up when a new version of the actor is dragged to the workflow.)</p> Bug #2850 (Resolved): Better Error message for missing 'R'https://projects.ecoinformatics.org/ecoinfo/issues/28502007-05-22T21:02:22ZDan Higginshiggins@nceas.ucsb.edu
<p>If a workflow containing an RExpression actor is executed and R cannot be started from the command line (missing or not in PATH), a cryptic error message like 'The pipe has been ended appears'. Need to catch this error and provide a more meaningful error message (or check for R installation in some other way).</p> Bug #2809 (Resolved): Browser Display actor fails for Mac/Linuxhttps://projects.ecoinformatics.org/ecoinfo/issues/28092007-04-03T17:40:07ZDan Higginshiggins@nceas.ucsb.edu
<p>Browser Display actor does not detect MacOSX and always uses Netscape for Linux systems. Need to detect the default browser and use that.</p>
<p>see <a class="external" href="http://www.centerkey.com/java/browser/">http://www.centerkey.com/java/browser/</a> <br />for java code that detects default browser and works across multiple OSs</p> Bug #2779 (Resolved): ASC_To_Raw actor has bug in setting output directoryhttps://projects.ecoinformatics.org/ecoinfo/issues/27792007-02-21T22:17:18ZDan Higginshiggins@nceas.ucsb.edu
<p>Actor works OK if the outputRawFileName parameter is left blank (raw files are created in the same directory as the asc files). However, if set to a directory, all but first of the *.raw files are still added to the dir *.asc files are in!</p> Bug #2558 (Resolved): Cannot create a new 'kar' file for modified actorhttps://projects.ecoinformatics.org/ecoinfo/issues/25582006-10-03T18:02:22ZDan Higginshiggins@nceas.ucsb.edu
<p>We have a 'Save in Library...' menu for adding a modified actor to the actor/ontology list(tree) but this menu no longer creates a 'kar' file. We need to add a menu item for creating a kar file so that the new actor description can be saved and added to source code.</p> Bug #2493 (Resolved): actor repository tracking bughttps://projects.ecoinformatics.org/ecoinfo/issues/24932006-07-18T21:42:18ZDan Higginshiggins@nceas.ucsb.edu
<p>The Kepler repository at <a class="external" href="http://library.kepler-project.org/">http://library.kepler-project.org/</a> currently has 52 components in it, but (nearly?) all are just copies of actors already built into Kepler. If downloaded and imported (using the menu item 'File/Import Archive (KAR)', one gets an error because the LSID is already in use (because the actor is already in Kepler). We need to remove any actors that are just duplicates.</p>
<p>Also, all files (KARs) downloaded from the repository seemed to be named just 'data' on download (at least on a Windows box). Download name should be more meaningful and should end with '.kar' since that is the file extention that Kepler is looking for to import the file.</p> Bug #2461 (Resolved): Add MetadataSource actor to treehttps://projects.ecoinformatics.org/ecoinfo/issues/24612006-06-15T21:49:54ZDan Higginshiggins@nceas.ucsb.edu
<p>The MetadataSource actor has been around since June 2005 but apparently was never added to the actor tree when kar system was created. It is used in the 'EcogridWriterTest.xml' workflow in $KEPLER/workflows/test/ to provide metadata to the EcogridWriter. It needs to be added to the actor tree and perhaps extended to allow metadata input on ports (in additon to the parameter input) for use in saving GARP best rulesets.</p> Bug #2398 (Resolved): change R home directory that is default of RExpression actorhttps://projects.ecoinformatics.org/ecoinfo/issues/23982006-04-06T03:38:57ZDan Higginshiggins@nceas.ucsb.edu
<p>The default working dir for R in the RExpession actor is set to the users $HOME directory. This causes a buildup of many temp files. Move the default to some subdirectory of .kepler so that it is removed when .kepler is deleted.</p>
<p>Also consider removal of contents when Kepler is shut-down(?)</p>
<p>Dan Higgins (April 5, 2006)</p> Bug #2389 (Resolved): Actor seach problemhttps://projects.ecoinformatics.org/ecoinfo/issues/23892006-03-23T15:06:53ZDan Higginshiggins@nceas.ucsb.edu
<p>Try seaching actor tree for 'Doc' or 'DocViewer'. Tree just 'flashes' and<br />returns to a single top level node. Seache for 'Docu' works!<br />(Observed on a Windows machine be Dan Higgins)</p> Bug #2340 (Resolved): Adding new actor to actor tree does not workhttps://projects.ecoinformatics.org/ecoinfo/issues/23402006-01-19T20:10:47ZDan Higginshiggins@nceas.ucsb.edu
<p>Right clicking on a directory in the actor tree brings up a menu to add an actor<br />to the folder. Selecting the add actor menu brings up a dialog which used to<br />work for atomic actors. Now (1/19/2006) trying to add an actor just brings up a<br />dialog that says 'Something bad happened'<br />Dan Higgins 1/19/2006</p> Bug #2256 (Resolved): Actor selection problem inside some Compositeshttps://projects.ecoinformatics.org/ecoinfo/issues/22562005-11-08T17:49:38ZDan Higginshiggins@nceas.ucsb.edu
<p>This is a strange one!<br />How to observe the problem:<br />1) Open the GARP_Single_Species_BestRuleSet.xml workflow (<a class="issue tracker-1 status-3 priority-2 priority-default closed" title="Bug: need exception handling mechanism (Resolved)" href="https://projects.ecoinformatics.org/ecoinfo/issues/19">#19</a> in ENM_Workflows<br />html page)<br />2) Look inside the 'Iterate ENM Calculation' composite<br />3) Look inside the 'V - Calculate Omission/Commission' composite in the screen<br />opened in 2)<br />4) Inside the 'Calculate Omission/Commission' window, find the Expression actor<br />which contains "DataDirectory+"/RuleSet"+cnt+".xml". Right clisk on the right<br />hand corner of this actor and a popup menu is displayed as expected. <br />However, if you right-click on the left corner, a NullPointerException occurs<br />in the AnnotatedPTree.notifyComponentDrop object!<br />It looks like none of the actors in the lower left of the screen are responding<br />properly to right click events. (In fact, the errors look like it thinks the<br />events are happening in the actor tree rather than the graph pane.)</p> Bug #2243 (Resolved): bug in inverse distance interpolation in Grid Rescaling actorhttps://projects.ecoinformatics.org/ecoinfo/issues/22432005-11-04T17:22:58ZDan Higginshiggins@nceas.ucsb.edu
<p>An attempt to smooth the IDW interpolation near NO_DATA edges of a grid has<br />resulted in errors in interpolation (that are clearly visible as a 'waffle' type<br />background in images).</p>
<p>Reason for this bug is currenly unclear. Needs to be fixed for use in ENM workflow.</p> Bug #2224 (Resolved): Annotation actor not working correctly from KAR filehttps://projects.ecoinformatics.org/ecoinfo/issues/22242005-10-10T22:03:18ZDan Higginshiggins@nceas.ucsb.edu
<p>With the new .kar files for building the actor tree, the Annotation actor gives<br />a simple rectangle with dragged to the graph area rather than an editable text<br />box. Apparently, something is wrong with the configuration.</p> Bug #2013 (Resolved): Allow case insensitive user inputhttps://projects.ecoinformatics.org/ecoinfo/issues/20132005-03-11T18:52:36ZDan Higginshiggins@nceas.ucsb.edu
<p>(suggested by Laura Downey)<br />especially for port information (e.g. port types)</p>