Kepler: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362010-05-28T18:30:08ZEcoinformatics Redmine
Redmine Bug #5036 (New): All workflows that do not work should be moved.https://projects.ecoinformatics.org/ecoinfo/issues/50362010-05-28T18:30:08ZDavid Welkerwelker4kepler@gmail.com
<p>I am moving all workflows that do not work to an unsupported directory so that people are not surprised when they try out such a workflow and find it doesn't work.</p> Bug #5027 (New): Users should be able to build installers for the Kepler-2.0 branchhttps://projects.ecoinformatics.org/ecoinfo/issues/50272010-05-24T17:32:46ZChristopher Brookscxh@eecs.berkeley.edu
<p>Kepler users should be able to build installers so that they may deploy<br />a shrinkwrapped installation to other users. Currently, "ant installer" <br />works in the Kepler devel trunk, but fails in the 2.0 branch.</p>
<p>[installer] Writing installer file to /Users/cxh/src/kepler-2.0/build-area/installer/install.xml<br /> [izpack] ERROR: 'The content of elements must consist of well-formed character data or markup.'<br /> [izpack] ERROR: 'com.sun.org.apache.xml.internal.utils.WrappedRuntimeException: The content of elements must consist of well-formed character data or markup.'<br /> [izpack] javax.xml.transform.TransformerException: javax.xml.transform.TransformerException: com.sun.org.apache.xml.internal.utils.WrappedRuntimeException: The content of elements must consist of well-formed character data or markup.<br /> [izpack] at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerImpl.transform(TransformerImpl.java:673)<br /> [izpack] at com.sun.org.apache.xalan.internal.xsltc.trax.TransformerImpl.transform(TransformerImpl.java:300)<br /> [izpack] at com.izforge.izpack.adaptator.impl.XMLParser.parseLineNrFromInputSource(Unknown Source)</p>
<p>We are not currently exposing the "ant installer" command to users, so<br />this is an RFE, not a bug.</p>
<p>See bug 4994 at<br /><a class="external" href="http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4994">http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4994</a></p> Bug #5024 (Resolved): Uninstaller couldn't delete the rc3 folder on windows 7https://projects.ecoinformatics.org/ecoinfo/issues/50242010-05-20T22:01:15ZJing Taotao@nceas.ucsb.edu
<p>Uninstaller couldn't remove the rc3 folder in Program File on Windows 7 (Vista). But it can remove desktop icon and kepler menu item on "Start" menu.</p>
<p>RC2 uninstaller has the same issue.</p>
<p>Morpho had the same problem. But after upgrading IzPack to 4.3.1, the bug was fixed.</p> Bug #5023 (Resolved): The desktop icon of rc3 is a blank page on windows vistahttps://projects.ecoinformatics.org/ecoinfo/issues/50232010-05-20T21:00:20ZJing Taotao@nceas.ucsb.edu
<p>The icon is a blank page on windows. It was a issue on rc2 as well.</p> Bug #5022 (Resolved): 2.0-RC3 Windows installer creates Kepler 2.0-RC2 start menu choice, not Kep...https://projects.ecoinformatics.org/ecoinfo/issues/50222010-05-20T19:52:20ZChristopher Brookscxh@eecs.berkeley.edu
<p>With the Kepler-2.0-RC3 Windows installer, the shortcut in Start->All Programs<br />->Kepler is Kepler 2.0-RC2, not Kepler-2.0-RC3.</p>
<p>Also, the icon for "Kepler 2.0-RC2" is missing, I get a default<br />icon, not the Kepler Icon.</p> Bug #5021 (Resolved): release date is wrong in installer readmehttps://projects.ecoinformatics.org/ecoinfo/issues/50212010-05-20T18:42:15ZChad Berkleyberkley@nceas.ucsb.edu
<p>change the date to the actual release date. it's set as may 12 right now.</p> Bug #5020 (Resolved): 2.0-RC3 installer: R Kepler Module is not optionalhttps://projects.ecoinformatics.org/ecoinfo/issues/50202010-05-20T17:28:08ZChristopher Brookscxh@eecs.berkeley.edu
<p>When installing Kepler-2.0-RC3, I'm presented with<br />two choices:<br />Kepler<br />R Kepler Module</p>
<p>Both are required, I can't uncheck "R Kepler Module",<br />so why bother with this window?</p> Bug #5005 (Resolved): regular user couldn't start kepler after it was installed on windows 7https://projects.ecoinformatics.org/ecoinfo/issues/50052010-05-12T19:19:36ZJing Taotao@nceas.ucsb.edu
<p>Jianwu, can you start the kepler on windows 7. I can installed it successfully.<br />But it can't be started.</p>
<p>Last time, RC1 could be installed and started.</p>
<p>Jing, I have to right click the icon and use 'Run as administrator', or start<br />cmd using 'Run as administrator' and execute the Kepler.bat. Otherwise, it will<br />have access denied exception:</p>
<p>Exception in thread "main" java.io.FileNotFoundException: C:\Program<br />Files\Keple<br />r-2.0-RC2\build-area\present.txt (Access is denied) <br />...</p> Bug #4994 (Resolved): ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resour...https://projects.ecoinformatics.org/ecoinfo/issues/49942010-05-08T03:14:26ZChristopher Brookscxh@eecs.berkeley.edu
<p>Working from the instructions at<br /><a class="external" href="https://kepler-project.org/developers/teams/build/building-kepler-installers">https://kepler-project.org/developers/teams/build/building-kepler-installers</a><br />and using Kepler-2.0 instead of the devel trunk, I have problems with<br />"ant install" </p>
<pre><code>mkdir kepler-2.0<br /> cd kepler-2.0<br /> svn co <a class="external" href="https://code.kepler-project.org/code/kepler/releases/release-branches/build-area-2.0/">https://code.kepler-project.org/code/kepler/releases/release-branches/build-area-2.0/</a> build-area<br /> cd build-area<br /> ant change-to -Dsuite=kepler-2.0<br /> ant clean-cache<br /> ant eclipse<br /> ant installer</code></pre>
<p>Fails with:<br />--start--<br />[installer] Appending packs from the outreach-2.0 module.<br />[installer] Appending packs from the r-2.0 module.<br />[installer] Appending packs from the ptolemy-8.0 module.<br />[installer] basedirPath: /Users/cxh/src/kepler-2.0<br />[installer] Filtering out non-used OS elements.<br />[installer] Writing installer file to /Users/cxh/src/kepler-2.0/build-area/installer/install.xml</p>
<p>BUILD FAILED<br />/Users/cxh/src/kepler-2.0/build-area/build.xml:337: The following error occurred while executing this line:<br />/Users/cxh/src/kepler-2.0/build-area/build.xml:361: com.izforge.izpack.compiler.CompilerException: installer/install.xml:252: Invalid directory 'dir': /Users/cxh/src/kepler-2.0/outreach-2.0.0/resources<br />--end--</p>
<p>build-area/installer/install.xml is generated by the build process and includes<br />a reference to outreach-2.0.0, which does not exist. outreach-2.0 does<br />exist.</p>
<p>See also<br /><a class="external" href="http://mercury.nceas.ucsb.edu/kepler/pipermail/kepler-users/2010-April/002154.html">http://mercury.nceas.ucsb.edu/kepler/pipermail/kepler-users/2010-April/002154.html</a></p>
<p>A test suite would help with this sort of problem.</p> Bug #4992 (Resolved): In a shared installation, how does the user get the demo?https://projects.ecoinformatics.org/ecoinfo/issues/49922010-05-08T01:43:11ZChristopher Brookscxh@eecs.berkeley.edu
<p>The intro screen says</p>
<p>"All listed demos are in the KeplerData/Kepler-2.0.Demos/getting-started which can be found in your home directory."</p>
<p>In a shared installation, how does anyone other than the installer get <br />that directory?</p> Bug #4991 (Resolved): Kepler-2.0-RC2 fails to start for a non-admin user after admin installhttps://projects.ecoinformatics.org/ecoinfo/issues/49912010-05-08T01:39:57ZChristopher Brookscxh@eecs.berkeley.edu
<p>I installed Kepler as admin under Windows 2003 and the installation works<br />fine.<br />If I try to start Kepler as a non-admin user, it appears to start up<br />and then exit?</p>
<p>Running kepler.bat as a non-admin user fails:</p>
<p>C:\PROGRA~1\Kepler-2.0-RC2>.\kepler.bat<br />Exception in thread "main" java.io.FileNotFoundException: C:\Program Files\Keple<br />r-2.0-RC2\build-area\present.txt (Access is denied)<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:105)<br /> at org.kepler.build.modules.Module.readPresent(Module.java:209)<br /> at org.kepler.build.modules.Module.transformName(Module.java:296)<br /> at org.kepler.build.modules.Module.<init>(Module.java:141)<br /> at org.kepler.build.modules.Module.<init>(Module.java:186)<br /> at org.kepler.build.modules.ModulesTxt.readHelper(ModulesTxt.java:148)<br /> at org.kepler.build.modules.ModulesTxt.read(ModulesTxt.java:120)<br /> at org.kepler.build.modules.ModulesTxt.init(ModulesTxt.java:57)<br /> at org.kepler.build.modules.ModuleTree.init(ModuleTree.java:96)<br /> at org.kepler.build.modules.ModulesTask.init(ModulesTask.java:86)<br /> at org.kepler.build.runner.Kepler.main(Kepler.java:76)<br />Caused by: java.io.FileNotFoundException: C:\Program Files\Kepler-2.0-RC2\build-<br />area\present.txt (Access is denied)<br /> at java.io.FileOutputStream.open(Native Method)<br /> at java.io.FileOutputStream.<init>(FileOutputStream.java:179)<br /> at java.io.FileOutputStream.<init>(FileOutputStream.java:131)<br /> at java.io.FileWriter.<init>(FileWriter.java:73)<br /> at org.kepler.build.UpdatePresentTxt.run(UpdatePresentTxt.java:66)<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:101)<br /> ... 10 more<br />--- Nested Exception ---<br />java.io.FileNotFoundException: C:\Program Files\Kepler-2.0-RC2\build-area\presen<br />t.txt (Access is denied)<br /> at java.io.FileOutputStream.open(Native Method)<br /> at java.io.FileOutputStream.<init>(FileOutputStream.java:179)<br /> at java.io.FileOutputStream.<init>(FileOutputStream.java:131)<br /> at java.io.FileWriter.<init>(FileWriter.java:73)<br /> at org.kepler.build.UpdatePresentTxt.run(UpdatePresentTxt.java:66)<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:101)<br /> at org.kepler.build.modules.Module.readPresent(Module.java:209)<br /> at org.kepler.build.modules.Module.transformName(Module.java:296)<br /> at org.kepler.build.modules.Module.<init>(Module.java:141)<br /> at org.kepler.build.modules.Module.<init>(Module.java:186)<br /> at org.kepler.build.modules.ModulesTxt.readHelper(ModulesTxt.java:148)<br /> at org.kepler.build.modules.ModulesTxt.read(ModulesTxt.java:120)<br /> at org.kepler.build.modules.ModulesTxt.init(ModulesTxt.java:57)<br /> at org.kepler.build.modules.ModuleTree.init(ModuleTree.java:96)<br /> at org.kepler.build.modules.ModulesTask.init(ModulesTask.java:86)<br /> at org.kepler.build.runner.Kepler.main(Kepler.java:76)</p>
<p>C:\PROGRA~1\Kepler-2.0-RC2></p>
<p>Running kepler.exe just returns.</p> Bug #4989 (Resolved): The installer should offer to start Keplerhttps://projects.ecoinformatics.org/ecoinfo/issues/49892010-05-08T00:56:35ZChristopher Brookscxh@eecs.berkeley.edu
<p>The installer should offer to start Kepler upon completion so that<br />the user does not have to go digging for it.<br />See ptII8.0/adm/gen-8.0/ptII8_0_1_setup_windows.xml</p> Bug #4987 (Resolved): RC2 cannot find R pkghttps://projects.ecoinformatics.org/ecoinfo/issues/49872010-05-07T21:01:58ZDaniel Crawldanielcrawl@gmail.com
<p>The RC2 installer can't find the R pkg: it's looking in r-2.0 but should be r-2.0.0.</p> Bug #4984 (Resolved): user mailing list is wronghttps://projects.ecoinformatics.org/ecoinfo/issues/49842010-05-07T17:39:41ZDaniel Crawldanielcrawl@gmail.comBug #4322 (Resolved): Attempting to save changes to a workflow saved in a KAR file failshttps://projects.ecoinformatics.org/ecoinfo/issues/43222009-08-18T18:32:27ZSean Riddleswriddle@gmail.com
<p>The following fails:</p>
<p>1) Create new workflow<br />2) Instantiate a Constant actor<br />3) Right click on canvas and Save Archive<br />4) Create new canvas and close existing workflow<br />5) Open the workflow from the library pane by Right-clicking on Workflows->WorkflowName and select "Open Archive (KAR)" <br />6) Change the value of the Constant actor<br />7) Close canvas. Kepler will inform you it wants to save change to file [path to Kepler directory]. Of course saying 'yes' won't work.</p>
<p>Possible solutions: Either save things back correctly to the KAR file, or if this is not the desired behavior, disable the save functionality (and the save reminder, of course).</p>