Kepler: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362010-04-19T18:39:33ZEcoinformatics Redmine
Redmine Bug #4943 (Resolved): RC5 Installer Tracking Bughttps://projects.ecoinformatics.org/ecoinfo/issues/49432010-04-19T18:39:33ZChad Berkleyberkley@nceas.ucsb.edu
<p>Please have all RC1 installer bugs block this bug.</p> Bug #4899 (Resolved): Installer Bugshttps://projects.ecoinformatics.org/ecoinfo/issues/48992010-03-23T17:07:01ZChad Berkleyberkley@nceas.ucsb.edu
<p>Tracking bug for 2.0 installer issues.</p> Bug #4722 (Resolved): find 1.0 -> 2.0 .kepler incompatibilitieshttps://projects.ecoinformatics.org/ecoinfo/issues/47222010-02-02T18:08:43ZChad Berkleyberkley@nceas.ucsb.edu
<p>Need to go through the 1.0 .kepler directory and find any kars that have jars/classes and figure out a way to migrate them to the new kar format which does not include jars/classes. Also check for any incompatible files in the .kepler directory from 1.0.</p> Bug #4159 (Resolved): Cut 2.0-alpha/SanParks releasehttps://projects.ecoinformatics.org/ecoinfo/issues/41592009-06-15T20:42:24ZChad Berkleyberkley@nceas.ucsb.edu
<p>Tasks:</p>
<ul>
<li>Cut the release (tag) </li>
<li>Create installers for mac, windows, linux</li>
<li>test all 2.0-alpha targeted functionality of kepler via the installed version (not the SVN version)</li>
<li>make sure to include all documentation</li>
<li>upload release to kepler-project.org</li>
</ul>
<p>add further tasks below.</p> Bug #4065 (Resolved): Copy documentation into installerhttps://projects.ecoinformatics.org/ecoinfo/issues/40652009-05-13T18:10:22ZChad Berkleyberkley@nceas.ucsb.edu
<p>Make sure the installer includes the documentation from kepler-docs and that the links in the help menu work.</p> Bug #4064 (Resolved): remove r installer after installation is completehttps://projects.ecoinformatics.org/ecoinfo/issues/40642009-05-13T17:32:10ZChad Berkleyberkley@nceas.ucsb.edu
<p>delete the file r/module-info/R-2.9.0* after installation of kepler and R is complete to save disc space.</p> Bug #4026 (Resolved): Bootstrapper will not run kepler in a directory with spaceshttps://projects.ecoinformatics.org/ecoinfo/issues/40262009-04-24T18:29:12ZChad Berkleyberkley@nceas.ucsb.edu
<p>When the bootstrapper is run, it generates the classpath based on where the kepler directory is. If this location includes spaces in the path, it fails with the error:</p>
<p>Exception in thread "main" Java returned: 1<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:89)<br /> at org.kepler.build.runner.Kepler.main(Kepler.java:65)<br />Caused by: Java returned: 1<br /> at org.apache.tools.ant.taskdefs.Java.execute(Java.java:108)<br /> at org.kepler.build.Run.runSuite(Run.java:188)<br /> at org.kepler.build.Run.run(Run.java:143)<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:85)<br /> ... 1 more<br />--- Nested Exception ---<br />Java returned: 1<br /> at org.apache.tools.ant.taskdefs.Java.execute(Java.java:108)<br /> at org.kepler.build.Run.runSuite(Run.java:188)<br /> at org.kepler.build.Run.run(Run.java:143)<br /> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:85)<br /> at org.kepler.build.runner.Kepler.main(Kepler.java:65)</p>
<p>I've tried adding quotes to the paths in multiple forms. The first form, I put the quotes around just the parts of the path with spaces (i.e. c:\"Program Files"\Kepler-1.0Dev). The second way I tried it was with quotes around the entire classpath (i.e. "c:\Program files\Kepler-1.0Dev"). Neither option seems to work. Need to figure this out since this is the year 2009 and paths with spaces should not matter.</p> Bug #4018 (Resolved): Remove non-2.0 functionality from 2.0 releasehttps://projects.ecoinformatics.org/ecoinfo/issues/40182009-04-22T22:54:32ZChad Berkleyberkley@nceas.ucsb.edu
<p>Make sure any functionality not on the 2.0 release list is removed prior to creating the final installers.</p> Bug #4017 (Resolved): Make sure module manager and installer work together wrt the classpathhttps://projects.ecoinformatics.org/ecoinfo/issues/40172009-04-22T22:53:29ZChad Berkleyberkley@nceas.ucsb.edu
<p>Need to make sure the module manager and the installer are on the same page when it comes to building and using the classpath. This shouldn't be a problem if both use the bootstrapper that creates the classpath at runtime.</p> Bug #4013 (Resolved): Make sure duplicate jars are not included in the installerhttps://projects.ecoinformatics.org/ecoinfo/issues/40132009-04-22T22:29:04ZChad Berkleyberkley@nceas.ucsb.edu
<p>to the greatest extent possible, try to reduce the size of the installer by removing duplicate jars.</p> Bug #3949 (Resolved): Get the installer working with the new build systemhttps://projects.ecoinformatics.org/ecoinfo/issues/39492009-04-06T19:10:42ZChad Berkleyberkley@nceas.ucsb.edu
<p>The build system needs to be able to create an IzPack installer for the standard modules to install the core of kepler. This should be able to work on windows, osx and linux. Windows vista should be tested as well as XP.</p> Bug #3483 (Resolved): case sensitive Leopard install failshttps://projects.ecoinformatics.org/ecoinfo/issues/34832008-09-05T17:18:42ZSrinath Vadlamanisrinath@txcorp.com
<p>Looks like the installer assumes a case insensitive file system on Mac OS X. Leopard now offers a true case sensitive file system. Thus some actions during the installation process fail although it states the install was complete. The console shows the errors.</p> Bug #3369 (Resolved): Kepler will not start (OS X 10.52) as JavaApplicationStub is not executablehttps://projects.ecoinformatics.org/ecoinfo/issues/33692008-06-06T05:19:34ZStuart Jefferyssrj@unc.edu
<p>As installed, I could not run Kepler at all. Nothing in the GUI indicated why it didn't start, but a permission error is generated to the console. I think the Kepler.app/Contents/MacOS/JavaApplicationStub needs to be executable. As installed it was not. When I set the permissons to executable, it worked. In summary the work-arround was:</p>
<p>sudo chmod +x /Applications/Kepler/Kepler.app/Contents/MacOS/JavaApplicationStub</p>
<p>I am using:<br /> Mac OsX Leopard 10.5.2 on an (Intel based) MacBook Pro.<br /> Java version "1.5.0_13" <br /> Java(TM) 2 Runtime Environment, Standard Edition (build 1.5.0_13-b05-237)<br /> Java HotSpot(TM) Client VM (build 1.5.0_13-119, mixed mode, sharing)</p>
<p>Associated error reported as a console message:<br /> com.apple.launchd<sup><a href="#fn71">71</a></sup> ([0x0-0x97097].Kepler<sup><a href="#fn989">989</a></sup>)<br /> posix_spawnp("/Applications/Kepler/Kepler.app/Contents/MacOS/JavaApplicationStub", ...): Permission denied</p>
<p>As a side note (and possible avoiding future problems), I wanted to pass along some of the information I found while investigating this. I ran into all kinds of information on OS X "system specific" java dependencies. When applied to OS X, "write once, run everywhere" seems to have left out a piece in the middle - "package separately for every version and every system". I don't know how the Kepler bundle for mac is created, but the JavaApplicationStub file appears to be copied from the OS by the Jar Bundler application, and this can be different on different versions of mac, especially between PPC and INTEL versions. What that means is not clear to me, but it seems to have caused problems in the past for other people. Using Eclipse to diff my system framework version and the one provided with Kepler indicated small differences between the two binary files, unfortunately none in clear ascii-translatable regions.</p>
<p>There is also a "JavaApplicationStub64" that complicates things going forward. A web page explaining some of the background is <a class="external" href="http://developer.apple.com/java/javaleopard.html">http://developer.apple.com/java/javaleopard.html</a>. I have never seen such a short Google listing as generated for a single term as for "JavaApplicationStub64". 17 hits, with only 9 in english.</p>
<p>Thanks for the interesting application. I am looking forward to working with this.</p> Bug #3133 (Resolved): R is not added to the pathhttps://projects.ecoinformatics.org/ecoinfo/issues/31332008-02-05T21:50:17ZChad Berkleyberkley@nceas.ucsb.edu
<p>The errors cxh got with R seem to be coming from the fact that R is installed, but not put into the path on windows. I'm trying to figure out how to do that with IzPack right now.</p> Bug #1334 (Resolved): need installer for keplerhttps://projects.ecoinformatics.org/ecoinfo/issues/13342004-02-09T16:53:43ZChad Berkleyberkley@nceas.ucsb.edu
<p>We need a user friendly installer for Kepler. We could possibly use<br />installanywhere or a similar commercial product to produce the installer. it<br />would be nice if the creation of the installer is automated into the ant build<br />process so that it's easy to create releases. This needs to be done by the SEEK<br />meeting in EDI May 8.</p>