Kepler: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362008-01-23T00:18:29ZEcoinformatics Redmine
Redmine Bug #3090 (Resolved): ASC2RAWTest demo workflow errorhttps://projects.ecoinformatics.org/ecoinfo/issues/30902008-01-23T00:18:29ZShawn Bowersbowers@gonzaga.edu
<p>When I try to run this workflow I get the java exception:</p>
<p>Cannot open file or URL in .ASC2RAWTest.Layer List Reader.fileOrURL<br />Because: <br />.../demos/ENM/layerList.txt (No such file or directory)</p> Bug #3089 (Resolved): Actor port properties lost after saving to libraryhttps://projects.ecoinformatics.org/ecoinfo/issues/30892008-01-23T00:12:52ZShawn Bowersbowers@gonzaga.edu
<p>If I select an actor (e.g., Garp Prediction), add a semantic type to one of its input ports, and save it back to the library (e.g., as My Garp Prediction), when I drag the actor back onto the canvas, the semantic type property is no longer available (it somehow was "lost in translation"). This happens with the latest version/update of Kepler and PTII (02/22/08).</p> Bug #2914 (Resolved): Broken link on a web pagehttps://projects.ecoinformatics.org/ecoinfo/issues/29142007-08-28T20:16:35ZBruce Charcharbw@drexel.edu
<p><a class="external" href="http://users.sdsc.edu/~altintas/codingStyle.pdf">http://users.sdsc.edu/~altintas/codingStyle.pdf</a> is mentioned on <a class="external" href="http://www.kepler-project.org/Wiki.jsp?page=SoftwareDevelopmentGuidelines">http://www.kepler-project.org/Wiki.jsp?page=SoftwareDevelopmentGuidelines</a> but it doesn't load.</p> Bug #2850 (Resolved): Better Error message for missing 'R'https://projects.ecoinformatics.org/ecoinfo/issues/28502007-05-22T21:02:22ZDan Higginshiggins@nceas.ucsb.edu
<p>If a workflow containing an RExpression actor is executed and R cannot be started from the command line (missing or not in PATH), a cryptic error message like 'The pipe has been ended appears'. Need to catch this error and provide a more meaningful error message (or check for R installation in some other way).</p> Bug #2830 (Resolved): Actor names to change/actors to remove from applicationhttps://projects.ecoinformatics.org/ecoinfo/issues/28302007-04-23T17:58:33ZKirsten Menger-Andersonkma500@hotmail.com
<p>I'm opening a bug to keep track of notes about some actors that have come up as I've gone through the actor docs.</p>
<p>Names to change:<br />GetPoint should be named GetMineralCompositionPoint <br />Get2DPoint should be named GetMineralComposition2DPoint</p>
<p>Actors to remove:<br />Interpolate: (per efrat) I think we can omit the Interpolate actor. It's not used in any used workflow and it's not fully implemented (only inverse distance is available) and very complex to use with all the parameters. I'm using other interpolation algorithms in workflows using web services. We can leave the actor in the distribution but probably omit it from the search.</p>
<p>InvokeService: (per efrat) The InvokeService actor can definitely be omitted, it's a wrapping of WorkflowExecute to use within a workflow, but Ptolemy also provides an actor to execute a whole workflow.</p>
<p>PortLineReader: this actor, util.LineReader, is being removed<br />FTPClient: This actor may not currently work. Unclear what plan for it is.</p> Bug #2809 (Resolved): Browser Display actor fails for Mac/Linuxhttps://projects.ecoinformatics.org/ecoinfo/issues/28092007-04-03T17:40:07ZDan Higginshiggins@nceas.ucsb.edu
<p>Browser Display actor does not detect MacOSX and always uses Netscape for Linux systems. Need to detect the default browser and use that.</p>
<p>see <a class="external" href="http://www.centerkey.com/java/browser/">http://www.centerkey.com/java/browser/</a> <br />for java code that detects default browser and works across multiple OSs</p> Bug #2779 (Resolved): ASC_To_Raw actor has bug in setting output directoryhttps://projects.ecoinformatics.org/ecoinfo/issues/27792007-02-21T22:17:18ZDan Higginshiggins@nceas.ucsb.edu
<p>Actor works OK if the outputRawFileName parameter is left blank (raw files are created in the same directory as the asc files). However, if set to a directory, all but first of the *.raw files are still added to the dir *.asc files are in!</p> Bug #2558 (Resolved): Cannot create a new 'kar' file for modified actorhttps://projects.ecoinformatics.org/ecoinfo/issues/25582006-10-03T18:02:22ZDan Higginshiggins@nceas.ucsb.edu
<p>We have a 'Save in Library...' menu for adding a modified actor to the actor/ontology list(tree) but this menu no longer creates a 'kar' file. We need to add a menu item for creating a kar file so that the new actor description can be saved and added to source code.</p> Bug #2461 (Resolved): Add MetadataSource actor to treehttps://projects.ecoinformatics.org/ecoinfo/issues/24612006-06-15T21:49:54ZDan Higginshiggins@nceas.ucsb.edu
<p>The MetadataSource actor has been around since June 2005 but apparently was never added to the actor tree when kar system was created. It is used in the 'EcogridWriterTest.xml' workflow in $KEPLER/workflows/test/ to provide metadata to the EcogridWriter. It needs to be added to the actor tree and perhaps extended to allow metadata input on ports (in additon to the parameter input) for use in saving GARP best rulesets.</p> Bug #2438 (Resolved): Actors to be Renamedhttps://projects.ecoinformatics.org/ecoinfo/issues/24382006-05-17T00:39:24ZMatthew Brookebrooke@nceas.ucsb.edu
<p>During icon assignment conference calls, Matt identified these actors as ones that should be re-named to be more descriptive of their actual functionality:</p>
<p>ptolemy.actor.lib.Accumulator <br />- rename from "Accumulator" to "Summation"</p>
<p>org.kepler.objectmanager.cache.DataCacheGetActor <br />- rename from "Filesystem cache get" to "Cache Get"</p>
<p>org.kepler.objectmanager.cache.DataCachePutActor<br />- rename from "Filesystem cache Put" to "Cache Put"</p> Bug #2389 (Resolved): Actor seach problemhttps://projects.ecoinformatics.org/ecoinfo/issues/23892006-03-23T15:06:53ZDan Higginshiggins@nceas.ucsb.edu
<p>Try seaching actor tree for 'Doc' or 'DocViewer'. Tree just 'flashes' and<br />returns to a single top level node. Seache for 'Docu' works!<br />(Observed on a Windows machine be Dan Higgins)</p> Bug #2345 (Resolved): Actor Library classname/icon mapping problemshttps://projects.ecoinformatics.org/ecoinfo/issues/23452006-01-27T00:04:27ZMatthew Brookebrooke@nceas.ucsb.edu
<p><b>This pertains to running Kepler with the new icons enabled</b><br />(to do so, edit the file configs/ptolemy/configs/kepler/uiSettings.properties<br />and change the SVG_RENDERING_IS_BATIK property to:<br />SVG_RENDERING_IS_BATIK=true, then do a clean build)<br />---------------------</p>
<p>1) First time Kepler is run after a clean build (deleting kepler/kar,<br />kepler/build and ~/.kepler), expand the actor ("components") tree until the<br />"Parameter" actors are showing ("ColorParameter", FileParameter" etc). Drag<br />ColorParameter to the canvas, and the icon shows up as a colored dot.</p>
<p>2) Now stop kepler, then re-run it again (non-clean run). Repeat the above, and<br />this time, the icon on the canvas for ColorParameter is a teal rectangle (ie the<br />default icon)</p>
<p>3) Also, in a previous incarnation, the small icons in the tree were correctly<br />assigned by classname (showed up as a teal dot) - now, that seems to be broken,<br />and all just use the default blank rectangle (not related to whether it's a<br />clean run or not). Sorry I don't have any more-concrete info on when this<br />stopped working.</p>
<p>The icons for those actors are currently assigned by classname (see<br />configs/ptolemy/configs/kepler/uiSVGIconMappingsByClass.properties), and I think<br />these changes in behavior is something to do with how the parameters are<br />instantiated - we previously saw (and Chad fixed) issues similar to this in the<br />ActorMetadata class, but for Directors - which were not getting instantiated as<br />the correct class (Director), rather as a superclass, I believe.</p>
<p>Let me kow if you need any more info</p> Bug #2343 (Resolved): add welcome screen for release 1.0https://projects.ecoinformatics.org/ecoinfo/issues/23432006-01-20T18:56:13ZLaura Downeyldowney@lternet.edu
<p>One of the prioritization decisions for Release 1.0 was to get rid of the html <br />page and open a blank workflow canvas but to also open on top of that <br />a "welcome" window with links to documentation. The welcome window should <br />also offer the user the option of not displaying the window upon startup if so <br />desired. In the future we hope to add links to online tutorials here also. <br />Draft design can be seen at: <a class="external" href="http://kepler-project.org/Wiki.jsp">http://kepler-project.org/Wiki.jsp</a>?<br />page=WelcomeScreen</p>
<p>Related bug: 2032</p> Bug #1839 (Resolved): adding new port sometimes causes canvas to resizehttps://projects.ecoinformatics.org/ecoinfo/issues/18392004-12-16T23:00:23ZChad Berkleyberkley@nceas.ucsb.edu
<p>sometimes when you add a new port with the toolbar, the port is added in the top<br />right corner of the workspace and the rest of the workflow is shrunk to<br />miniscule size. there is no way to drag the port over to where the workflow is.<br /> when the port is deleted the canvas goes back to normal size.</p> Bug #1339 (Resolved): add ecogrid interface to keplerhttps://projects.ecoinformatics.org/ecoinfo/issues/13392004-02-09T19:19:01ZChad Berkleyberkley@nceas.ucsb.edu
<p>we need to add an interface to kepler to deal with querying the ecogrid for data<br />and services. the interface that was discussed in january at nceas includes<br />adding a tab to the actor library with ecogrid search criteria. when a search<br />is complete, the results of the search can be dragged onto the canvas where they<br />will access the grid on runtime. jing, could you please add your notes from<br />that meeting to this bug?</p>