Kepler: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362013-03-20T16:04:20ZEcoinformatics Redmine
Redmine Bug #5895 (Resolved): HelloWorld link is broken under Kepler-2.4rc3https://projects.ecoinformatics.org/ecoinfo/issues/58952013-03-20T16:04:20ZChristopher Brookscxh@eecs.berkeley.edu
<p>Under Linux, the links to the demos fail? It seems like $CLASSPATH is not be expanded?</p>
<p>java.io.IOException: Failed to find file:/home/cxh/src/kepler-2.4RC3/common-2.4.0/configs/ptolemy/configs/kepler/$CLASSPATH/getting-started/04-HelloWorld.xml, also tried<br /> null and<br />null<br /> at ptolemy.actor.gui.HTMLViewer.hyperlinkUpdate(HTMLViewer.java:342)<br /> at javax.swing.JEditorPane.fireHyperlinkUpdate(JEditorPane.java:345)<br /> at javax.swing.text.html.HTMLEditorKit$LinkController.activateLink(HTMLEditorKit.java:877)<br /> at javax.swing.text.html.HTMLEditorKit$LinkController.mouseClicked(HTMLEditorKit.java:676)<br /> at java.awt.AWTEventMulticaster.mouseClicked(AWTEventMulticaster.java:270)<br /> at java.awt.Component.processMouseEvent(Component.java:6507)<br /> at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)<br /> at java.awt.Component.processEvent(Component.java:6269)<br /> at java.awt.Container.processEvent(Container.java:2229)<br /> at java.awt.Component.dispatchEventImpl(Component.java:4860)<br /> at java.awt.Container.dispatchEventImpl(Container.java:2287)<br /> at java.awt.Component.dispatchEvent(Component.java:4686)<br /> at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)<br /> at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4501)<br /> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)<br /> at java.awt.Container.dispatchEventImpl(Container.java:2273)<br /> at java.awt.Window.dispatchEventImpl(Window.java:2713)<br /> at java.awt.Component.dispatchEvent(Component.java:4686)<br /> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:707)<br /> at java.awt.EventQueue.access$000(EventQueue.java:101)<br /> at java.awt.EventQueue$3.run(EventQueue.java:666)<br /> at java.awt.EventQueue$3.run(EventQueue.java:664)<br /> at java.security.AccessController.doPrivileged(Native Method)<br /> at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)<br /> at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)<br /> at java.awt.EventQueue$4.run(EventQueue.java:680)<br /> at java.awt.EventQueue$4.run(EventQueue.java:678)<br /> at java.security.AccessController.doPrivileged(Native Method)<br /> at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)<br /> at java.awt.EventQueue.dispatchEvent(EventQueue.java:677)<br /> at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:211)<br /> at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:128)<br /> at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:117)<br /> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:113)<br /> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:105)<br /> at java.awt.EventDispatchThread.run(EventDispatchThread.java:90)<br />Caused by: java.io.FileNotFoundException: /home/cxh/src/kepler-2.4RC3/common-2.4.0/configs/ptolemy/configs/kepler/$CLASSPATH/getting-started/04-HelloWorld.xml (No such file or directory)<br /> at java.io.FileInputStream.open(Native Method)<br /> at java.io.FileInputStream.<init>(FileInputStream.java:138)<br /> at java.io.FileInputStream.<init>(FileInputStream.java:97)<br /> at sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:90)<br /> at sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:188)<br /> at java.net.URL.openStream(URL.java:1035)<br /> at ptolemy.actor.gui.EffigyFactory.checkForDTD(EffigyFactory.java:127)<br /> at ptolemy.actor.gui.PtolemyEffigy$Factory.createEffigy(PtolemyEffigy.java:384)<br /> at ptolemy.actor.gui.EffigyFactory.createEffigy(EffigyFactory.java:233)<br /> at ptolemy.actor.gui.Configuration.openModel(Configuration.java:1079)<br /> at ptolemy.actor.gui.Configuration.openModel(Configuration.java:1005)<br /> at ptolemy.actor.gui.HTMLViewer.hyperlinkUpdate(HTMLViewer.java:293)<br /> ... 35 more</p> Bug #5892 (Resolved): After running various demos like HelloWorld, the user is prompted to save ...https://projects.ecoinformatics.org/ecoinfo/issues/58922013-03-19T14:47:26ZChristopher Brookscxh@eecs.berkeley.edu
<p>In the 2.4RC3 Windows installer, after I run various demos, when I close the demo, the "Save changes to KAR" dialog pops up.</p>
<p>Probably the Kar files need to be updated in the svn repository.</p>
<p>HelloWorld, SimpleAddition and others are affected.</p> Bug #5891 (Resolved): Installer acks need to be update for Ptolemyhttps://projects.ecoinformatics.org/ecoinfo/issues/58912013-03-19T14:38:29ZChristopher Brookscxh@eecs.berkeley.edu
<p>The 2.4Rc3 installer acks for Ptolemy are out of date.<br />The text should be updated to say:</p>
<p>--start--<br />Ptolemy receives support in part by the Center for Hybrid and Embedded Software Systems (CHESS) at UC Berkeley, which receives support from the National Science Foundation (NSF awards #0720882 (CSR-EHS: PRET), #1035672 (CPS: Medium: Ptides), and #0931843 (CPS: Large: ActionWebs)), the Naval Research Laboratory (#NOOI73-12-1-G015), the Multiscale Systems Center (MuSyC), one of six research centers funded under the Focus Center Research Program, a Semiconductor Research Corporation program, and the following companies: Bosch, National Instruments, and Toyota. In the past, CHESS has been sponsorted by Agilent, DGIST, General Motors, Hewlett Packard, Infineon, and Microsoft.</p>
<p>Ptolemy is also supported in part by the TerraSwarm Research Center, one of six centers supported by the STARnet phase of the Focus Center Research Program (FCRP) a Semiconductor Research Corporation program sponsored by MARCO and DARPA.</p>
<p>Ptolemy is also supported in part by the Naval Research Laboratory project, "Software Producibility for System of Systems," and was accomplished under Cooperative Agreement Number NOOI73-12-1-G015.</p>
<p>--end--</p>
<p>To close this bug, the documentation for how to build a release should<br />be update to include going to <a class="external" href="http://ptolemy.eecs.berkeley.edu/sponsors.htm">http://ptolemy.eecs.berkeley.edu/sponsors.htm</a><br />to update the list of Ptolemy sponsors.</p> Bug #5789 (Resolved): component tree disappears after clicking Clear after downloading KARhttps://projects.ecoinformatics.org/ecoinfo/issues/57892013-01-18T02:14:06ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>To replicate:<br />- click Sources button in Search Components area<br />- check-mark Search for keplerRepository<br />- search components for: helloworld (login anonymous)<br />- right-click and select Download on 04-HelloWorld,kar. Wait a bit.<br />- click Cancel in the Search Components area to clear search</p>
<p>The tree should collapse, but instead entirely disappears, and subsequent search attempts give an error. Dan was unable to replicate, but Jing and I replicated on os x 10.8, and I got it to occur in 10.7 and win7 as well.</p> Bug #5759 (Resolved): MatrixViewer window does not reappearhttps://projects.ecoinformatics.org/ecoinfo/issues/57592012-12-05T23:23:44ZDaniel Crawldanielcrawl@gmail.com
<p>The MatrixViewer actor pops up a window displaying a matrix. If the window is closed, it does not reappear after running the model again (unlike the Display or plotting actors).</p>
<p>To reproduce:</p>
<p>1. open $PTII/ptolemy/domains/pn/demo/QR/QR.xml<br />2. run<br />3. close .QR.MatrixViewer<br />4. run</p> Bug #5745 (Resolved): "./kepler.sh -runwf -nogui -nocache workflow.xml" has error message after e...https://projects.ecoinformatics.org/ecoinfo/issues/57452012-11-20T21:37:50Zjianwu jianwujianwu@sdsc.edu
<p>I saw the same message at mac and linux:<br />rm -rf ~/.kepler; ./kepler.sh -runwf -nogui -nocache outreach/workflows/demos/getting-started/04-HelloWorld.xml.</p>
<p>It works without "-nocache" option or ~/.kepler is not deleted.</p>
<pre><code>[null] loading: ptolemy.moml.MoMLCommandLineApplication args: outreach/workflows/demos/getting-started/04-HelloWorld.xml <br /> [null] invoking: ptolemy.moml.MoMLCommandLineApplication.main<br /> [null] 21 ms. Memory: 125568K Free: 46142K (37%)<br /> [null] java.sql.SQLException: Table not found in statement [insert into cacheContentTable (name, lsid, date, file, type, classname) values ( ?, ?, ?, ?, ?, ? )]<br /> [null] at org.hsqldb.jdbc.Util.throwError(Unknown Source)<br /> [null] at org.hsqldb.jdbc.jdbcPreparedStatement.&lt;init&gt;(Unknown Source)<br /> [null] at org.hsqldb.jdbc.jdbcConnection.prepareStatement(Unknown Source)<br /> [null] at org.kepler.objectmanager.cache.CacheManager.&lt;init&gt;(CacheManager.java:121)<br /> [null] at org.kepler.objectmanager.cache.CacheManager.getInstance(CacheManager.java:162)<br /> [null] at org.kepler.module.core.Shutdown.shutdownModule(Shutdown.java:57)<br /> [null] at org.kepler.Kepler._initializeModules(Kepler.java:678)<br /> [null] at org.kepler.Kepler.load(Kepler.java:514)<br /> [null] at org.kepler.Kepler.load(Kepler.java:532)<br /> [null] at org.kepler.Kepler.parseArgsAndRun(Kepler.java:410)<br /> [null] at org.kepler.Kepler.main(Kepler.java:211)</code></pre> Bug #5732 (Resolved): EML 2.1.1 option should be added to metacat data sources in keplerhttps://projects.ecoinformatics.org/ecoinfo/issues/57322012-11-08T22:29:24ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>EML 2.1.1 option should be added to metacat data sources in kepler</p> Bug #5727 (Resolved): saving workflow changes canvas centerhttps://projects.ecoinformatics.org/ecoinfo/issues/57272012-10-30T19:37:57ZDaniel Crawldanielcrawl@gmail.com
<p>The first time a workflow is saved, the center of the canvas changes. The actors originally in the center are now in the top left. (This does not happen when saving as MoML or in Vergil.)</p> Bug #5725 (Resolved): Save dialog's folder drop-down menu crashes kepler in OS X 10.8 w/ 64-bit j...https://projects.ecoinformatics.org/ecoinfo/issues/57252012-10-30T00:22:02ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>On trunk, on Mac OS X 10.8 w/ java -version:<br />java version "1.6.0_37" <br />Java(TM) SE Runtime Environment (build 1.6.0_37-b06-434-11M3909)<br />Java HotSpot(TM) 64-Bit Server VM (build 20.12-b01-434, mixed mode)</p>
<p>clicking on the Save dialog's directory chooser drop down (where it says "MyWorkflows" by default) crashes Kepler with an error, and no stack trace:<br /> [run] Invalid memory access of location 0x7fb90421aea0 rip=0x7fb90421aea0</p>
<p>Jing has 10.8 and the same version of java and it happens to him too.<br />Dan tried in 10.6, and he didn't have any problems.</p> Bug #5719 (Resolved): parameter values no longer appear on canvashttps://projects.ecoinformatics.org/ecoinfo/issues/57192012-10-01T20:41:12ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>I noticed today that parameter values no longer appear on canvas.<br />E.g. if you drag out a Parameter, you'll see a blue dot icon. If you double-click on it and set its value to 5000, click OK, 5000 will not appear next to the dot as it should.</p> Bug #5714 (Resolved): user manual documentation for 2.4.https://projects.ecoinformatics.org/ecoinfo/issues/57142012-09-19T18:34:34Zjianwu jianwujianwu@sdsc.edu
<p>This documentation has 10 sections and 385 pages. It has to be split into sub-tasks.</p> Bug #5713 (Resolved): getting-started-guide documentation for Kepler 2.4https://projects.ecoinformatics.org/ecoinfo/issues/57132012-09-19T18:31:57Zjianwu jianwujianwu@sdsc.edu
<p>This documentation has around 50 pages and 8 Sections. It might need be split into more sub-tasks.</p> Bug #5712 (Resolved): illegal option chmod error during Kepler startuphttps://projects.ecoinformatics.org/ecoinfo/issues/57122012-09-19T00:20:05ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>Today during startup of trunk I started noticing this message on mac 10.8.1:</p>
<pre><code>[run] Building Kars...<br /> [run] start of workflow-scheduler-gui module initializing<br /> [run] &lt;OS&gt;Mac OS X&lt;/OS&gt;<br /> [run] ### chmod: illegal option -- -<br /> [run] usage: chmod [-fhv] [-R [-H | -L | -P]] [-a | +a | =a [i][# [ n]]] mode|entry file ...<br /> [run] chmod [-fhv] [-R [-H | -L | -P]] [-E | -C | -N | -i | -I] file ...</code></pre> Bug #5711 (Resolved): post release process cheatsheethttps://projects.ecoinformatics.org/ecoinfo/issues/57112012-09-18T23:30:24ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>Post release process notes, even if incomplete and sketchy, for others to see.</p> Bug #5703 (Resolved): GUI bug - Deleting an Actor with connected port causes a diamond relation t...https://projects.ecoinformatics.org/ecoinfo/issues/57032012-08-31T20:49:13ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>In the last week or so I've begun seeing a few GUI anomalies on trunk. One is:</p>
<p>Deleting an actor with a connected port causes a diamond relation to be created. If you undo the delete, the deleted actor returns, but the relation from actor1 to actor2 now connects via the diamond relation.</p>
<p>Replicate:<br />Drag out a Constant and a Display.<br />Connect output of Constant to input of Display.<br />Delete Display<br />Bug: diamond relation appears on canvas</p>
<p>This bug occurs in both kepler and vergil.</p>