Kepler: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362015-08-25T22:56:03ZEcoinformatics Redmine
Redmine Bug #6834 (Resolved): kepler data can icon displayed incorrectlyhttps://projects.ecoinformatics.org/ecoinfo/issues/68342015-08-25T22:56:03ZDaniel Crawldanielcrawl@gmail.com
<p>The "data can" icon used by DataTurbine and several other Kepler actors is displayed incorrectly. This appears to have been started with Ptolemy r73168 (r73163-73167 do not compile).</p> Feature #6833 (Resolved): syntax highlighting for language actorshttps://projects.ecoinformatics.org/ecoinfo/issues/68332015-08-23T21:35:26ZDaniel Crawldanielcrawl@gmail.com
<p>It would be nice if the Kepler language actors had syntax highlighting. Attached is an updated TextEditorConfigureFactory.</p> Bug #6831 (Closed): saving/loading window properties for multiple graphs/models in BasicGraphFramehttps://projects.ecoinformatics.org/ecoinfo/issues/68312015-08-16T22:50:16ZDaniel Crawldanielcrawl@gmail.com
<p>BasicGraphFrame saves properties such as center, zoom, size, etc., for the open frame. However, it assumes the frame only contains a single JGraph and model. Attached is an updated BasicGraphFrame that allows derived classes to save/load window properties for multiple JGraphs and models.</p> Bug #6829 (Closed): ant change-to fails under Windows Server 2012 R2 with Cygwinhttps://projects.ecoinformatics.org/ecoinfo/issues/68292015-08-12T23:39:08ZChristopher Brookscxh@eecs.berkeley.edu
<p>Under Windows Server 2012 R2 with Cygwin, I ran<br /><pre>
mkdir kepler.modules
cd kepler.modules
svn co https://code.kepler-project.org/code/kepler/trunk/modules/build-area
cd build-area
</pre></p>
<p>and then ant change-to failed:</p>
<pre>
$ ant change-to -Dsuite=kepler
Buildfile: C:\Users\cxh\src\kepler.modules\build-area\build.xml
change-to:
[change-to] Copying 1 file to C:\Users\cxh\src\kepler.modules\build-area
[change-to] Retrieving modules....
[change-to]
[change-to] kepler:
[change-to] Downloading (if necessary) kepler...
[change-to] svn co -r head https://code.kepler-project.org/code/kepler/trunk/modules/kepler C:\Users\cxh\src\kep\
ler.modules\kepler
[change-to] svn: E000002: Can't make directory '/cygdrive/c/Users/cxh/src/kepler.modules/build-area/C:\Users\cxh\
\src\kepler.modules\kepler': No such file or directory
[change-to]
BUILD FAILED
C:\Users\cxh\src\kepler.modules\build-area\build.xml:104: ERROR: It appears that the command did not execute pro\
perly and exited with an exit code of: 1
Total time: 1 second
cxh@AMPERE ~/src/kepler.modules/build-area
$
</pre>
<p>I can give out accounts on ampere.eecs.berkele.edu if necessary.</p> Bug #6681 (Resolved): unnecessary warnings when removing parametershttps://projects.ecoinformatics.org/ecoinfo/issues/66812015-03-02T22:03:52ZDaniel Crawldanielcrawl@gmail.com
<p>When a parameter is removed that is referenced by something else, a warning is displayed to the user (in Variable.setContainer()). However, there are situations where the reference should be ignored. For example, the Kepler provenance recorder has a reference to all the parameters in the workflow. Another example is PtolemyQuery in attachParameter().</p>
<p>Attached is a patch to avoid these unnecessary warnings.</p> Bug #6676 (Resolved): External Execution actors generates exception for empty directoryhttps://projects.ecoinformatics.org/ecoinfo/issues/66762015-02-27T21:36:46ZDaniel Crawldanielcrawl@gmail.com
<p>If the directory parameter is empty for the External Execution actor, a NullPointerException is generated:</p>
<p>java.lang.NullPointerException<br /> at ptolemy.actor.lib.Exec._exec(Exec.java:516)<br /> at ptolemy.actor.lib.Exec.fire(Exec.java:337)<br /> at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:496)</p>
<p>It would be better to default to user.dir or throw an exception saying directory must be specified.</p> Bug #6615 (Resolved): apple-extensions does not compile with java 8https://projects.ecoinformatics.org/ecoinfo/issues/66152014-11-02T21:28:46ZDaniel Crawldanielcrawl@gmail.com
<p>The apple-extensions module does not compile with java 8 because the package com.apple.eawt is no longer on the default classpath. Prior to java 8, these classes were in ui.jar, but are now in rt.jar, which is not used by javac. I tried explicitly adding rt.jar to the classpath, but javac still fails.</p>
<p>A workaround is to comment out this module from the Kepler suite.</p> Bug #6578 (Resolved): cannot hide director LocalClockhttps://projects.ecoinformatics.org/ecoinfo/issues/65782014-07-09T23:25:21ZDaniel Crawldanielcrawl@gmail.com
<p>I'd like to hide the "localClock" parameter in the edit parameters dialog for our DDPDirector. The problem is that LocalClock.setVisibility() overrides the base class and does nothing.</p> Bug #6577 (Resolved): infinite loop resolving port widthhttps://projects.ecoinformatics.org/ecoinfo/issues/65772014-07-09T23:06:53ZDaniel Crawldanielcrawl@gmail.com
<p>There are several actors whose output port is set to multiport. When this port is connected to a multiport input port, an error occurs when the workflow executes saying that the default port width could not be determined. The error message says that one way to fix this is call setDefaultPortWidth(1). This works if the output port is connected to only one port, but if the output port is connected to more ports, an infinite loop occurs during preinitialize(). I'm attaching an example workflow.</p> Bug #6572 (Resolved): An error is thrown when opening MatlabExpression.xml in common/workflows/de...https://projects.ecoinformatics.org/ecoinfo/issues/65722014-06-16T22:27:47Zjianwu jianwujianwu@sdsc.edu
<p>I got the following errors. The main reason is that $name is in the documentation of the actor explaining the expression parameter. If I edit the xml changing from $name to be $$name, the workflow can be opened correctly.</p>
<p>The same workflow works fine with Kepler 2.4. Not sure which changes in Kepler trunk cause this problem.</p>
<p>ptolemy.kernel.util.IllegalActionException: Error evaluating expression: <br />The parameter that is evaluated to produce the output. Typically, this parameter <br />evaluates an expression involving the inputs. To refer to parameters in scope <br />within the expression, use $name or ${name}, where "name" is the name of the <br />parameter.</p>
<pre><code>in .MatlabExpression.MatlabExpression.&lt;Unnamed Object&gt;.expression (parameter)<br />Because:<br />The ID name is undefined.<br /> in .MatlabExpression.MatlabExpression.&lt;Unnamed Object&gt;.expression (parameter)<br />Because:<br />Error evaluating expression: <br />The parameter that is evaluated to produce the output. Typically, this parameter <br />evaluates an expression involving the inputs. To refer to parameters in scope <br />within the expression, use $name or ${name}, where "name" is the name of the <br />parameter.</code></pre>
<pre><code>in .MatlabExpression.MatlabExpression.&lt;Unnamed Object&gt;.expression (parameter)<br />Because:<br />The ID name is undefined.<br /> at ptolemy.data.expr.Variable.validate(Variable.java:1507)<br /> at ptolemy.moml.MoMLParser.endDocument(MoMLParser.java:816)<br /> at com.microstar.xml.XmlParser.doParse(XmlParser.java:162)<br /> at com.microstar.xml.XmlParser.parse(XmlParser.java:132)<br /> at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1571)<br /> at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1507)<br /> at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1451)<br /> at ptolemy.moml.MoMLParser.parseFile(MoMLParser.java:1735)<br /> at org.kepler.gui.component.OpenCompositeAction.actionPerformed(OpenCompositeAction.java:147)<br /> at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)<br /> at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)<br /> at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)<br /> at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)<br /> at javax.swing.AbstractButton.doClick(AbstractButton.java:389)<br /> at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)<br /> at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:137)<br /> at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)<br /> at java.awt.Component.processMouseEvent(Component.java:6414)<br /> at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)<br /> at java.awt.Component.processEvent(Component.java:6179)<br /> at java.awt.Container.processEvent(Container.java:2084)<br /> at java.awt.Component.dispatchEventImpl(Component.java:4776)<br /> at java.awt.Container.dispatchEventImpl(Container.java:2142)<br /> at java.awt.Component.dispatchEvent(Component.java:4604)<br /> at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4618)<br /> at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)<br /> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4209)<br /> at java.awt.Container.dispatchEventImpl(Container.java:2128)<br /> at java.awt.Window.dispatchEventImpl(Window.java:2492)<br /> at java.awt.Component.dispatchEvent(Component.java:4604)<br /> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:717)<br /> at java.awt.EventQueue.access$400(EventQueue.java:82)<br /> at java.awt.EventQueue$2.run(EventQueue.java:676)<br /> at java.awt.EventQueue$2.run(EventQueue.java:674)<br /> at java.security.AccessController.doPrivileged(Native Method)<br /> at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)<br /> at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:97)<br /> at java.awt.EventQueue$3.run(EventQueue.java:690)<br /> at java.awt.EventQueue$3.run(EventQueue.java:688)<br /> at java.security.AccessController.doPrivileged(Native Method)<br /> at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)<br /> at java.awt.EventQueue.dispatchEvent(EventQueue.java:687)<br /> at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)<br /> at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)<br /> at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)<br /> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)<br /> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)<br /> at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)<br />Caused by: ptolemy.kernel.util.IllegalActionException: Error evaluating expression: <br />The parameter that is evaluated to produce the output. Typically, this parameter <br />evaluates an expression involving the inputs. To refer to parameters in scope <br />within the expression, use $name or ${name}, where "name" is the name of the <br />parameter.</code></pre>
<pre><code>in .MatlabExpression.MatlabExpression.&lt;Unnamed Object&gt;.expression (parameter)<br />Because:<br />The ID name is undefined.<br /> at ptolemy.data.expr.Variable._evaluate(Variable.java:1771)<br /> at ptolemy.data.expr.Variable._propagate(Variable.java:1848)<br /> at ptolemy.data.expr.Variable.validate(Variable.java:1484)<br /> ... 47 more<br />Caused by: ptolemy.data.expr.UndefinedConstantOrIdentifierException: The ID name is undefined.<br /> at ptolemy.data.expr.ParseTreeEvaluator.visitLeafNode(ParseTreeEvaluator.java:723)<br /> at ptolemy.data.expr.ASTPtLeafNode.visit(ASTPtLeafNode.java:125)<br /> at ptolemy.data.expr.ParseTreeEvaluator._evaluateChild(ParseTreeEvaluator.java:1360)<br /> at ptolemy.data.expr.ParseTreeEvaluator._evaluateAllChildren(ParseTreeEvaluator.java:1314)<br /> at ptolemy.data.expr.ParseTreeEvaluator.visitSumNode(ParseTreeEvaluator.java:1166)<br /> at ptolemy.data.expr.ASTPtSumNode.visit(ASTPtSumNode.java:129)<br /> at ptolemy.data.expr.ParseTreeEvaluator.evaluateParseTree(ParseTreeEvaluator.java:105)<br /> at ptolemy.data.expr.Variable._evaluate(Variable.java:1753)<br /> ... 49 more<br />Caused by: ptolemy.kernel.util.IllegalActionException: Error evaluating expression: <br />The parameter that is evaluated to produce the output. Typically, this parameter <br />evaluates an expression involving the inputs. To refer to parameters in scope <br />within the expression, use $name or ${name}, where "name" is the name of the <br />parameter.</code></pre>
<pre><code>in .MatlabExpression.MatlabExpression.&lt;Unnamed Object&gt;.expression (parameter)<br />Because:<br />The ID name is undefined.<br /> at ptolemy.data.expr.Variable._evaluate(Variable.java:1771)<br /> at ptolemy.data.expr.Variable._propagate(Variable.java:1848)<br /> at ptolemy.data.expr.Variable.validate(Variable.java:1484)<br /> at ptolemy.moml.MoMLParser.endDocument(MoMLParser.java:816)<br /> at com.microstar.xml.XmlParser.doParse(XmlParser.java:162)<br /> at com.microstar.xml.XmlParser.parse(XmlParser.java:132)<br /> at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1571)<br /> at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1507)<br /> at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1451)<br /> at ptolemy.moml.MoMLParser.parseFile(MoMLParser.java:1735)<br /> at org.kepler.gui.component.OpenCompositeAction.actionPerformed(OpenCompositeAction.java:147)<br /> at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)<br /> at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)<br /> at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)<br /> at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)<br /> at javax.swing.AbstractButton.doClick(AbstractButton.java:389)<br /> at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)<br /> at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:137)<br /> at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)<br /> at java.awt.Component.processMouseEvent(Component.java:6414)<br /> at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)<br /> at java.awt.Component.processEvent(Component.java:6179)<br /> at java.awt.Container.processEvent(Container.java:2084)<br /> at java.awt.Component.dispatchEventImpl(Component.java:4776)<br /> at java.awt.Container.dispatchEventImpl(Container.java:2142)<br /> at java.awt.Component.dispatchEvent(Component.java:4604)<br /> at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4618)<br /> at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)<br /> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4209)<br /> at java.awt.Container.dispatchEventImpl(Container.java:2128)<br /> at java.awt.Window.dispatchEventImpl(Window.java:2492)<br /> at java.awt.Component.dispatchEvent(Component.java:4604)<br /> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:717)<br /> at java.awt.EventQueue.access$400(EventQueue.java:82)<br /> at java.awt.EventQueue$2.run(EventQueue.java:676)<br /> at java.awt.EventQueue$2.run(EventQueue.java:674)<br /> at java.security.AccessController.doPrivileged(Native Method)<br /> at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)<br /> at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:97)<br /> at java.awt.EventQueue$3.run(EventQueue.java:690)<br /> at java.awt.EventQueue$3.run(EventQueue.java:688)<br /> at java.security.AccessController.doPrivileged(Native Method)<br /> at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)<br /> at java.awt.EventQueue.dispatchEvent(EventQueue.java:687)<br /> at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)<br /> at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)<br /> at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)<br /> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)<br /> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)<br /> at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)<br />Caused by: ptolemy.data.expr.UndefinedConstantOrIdentifierException: The ID name is undefined.<br /> at ptolemy.data.expr.ParseTreeEvaluator.visitLeafNode(ParseTreeEvaluator.java:723)<br /> at ptolemy.data.expr.ASTPtLeafNode.visit(ASTPtLeafNode.java:125)<br /> at ptolemy.data.expr.ParseTreeEvaluator._evaluateChild(ParseTreeEvaluator.java:1360)<br /> at ptolemy.data.expr.ParseTreeEvaluator._evaluateAllChildren(ParseTreeEvaluator.java:1314)<br /> at ptolemy.data.expr.ParseTreeEvaluator.visitSumNode(ParseTreeEvaluator.java:1166)<br /> at ptolemy.data.expr.ASTPtSumNode.visit(ASTPtSumNode.java:129)<br /> at ptolemy.data.expr.ParseTreeEvaluator.evaluateParseTree(ParseTreeEvaluator.java:105)<br /> at ptolemy.data.expr.Variable._evaluate(Variable.java:1753)<br /> ... 49 more<br />Caused by: ptolemy.data.expr.UndefinedConstantOrIdentifierException: The ID name is undefined.<br /> at ptolemy.data.expr.ParseTreeEvaluator.visitLeafNode(ParseTreeEvaluator.java:723)<br /> at ptolemy.data.expr.ASTPtLeafNode.visit(ASTPtLeafNode.java:125)<br /> at ptolemy.data.expr.ParseTreeEvaluator._evaluateChild(ParseTreeEvaluator.java:1360)<br /> at ptolemy.data.expr.ParseTreeEvaluator._evaluateAllChildren(ParseTreeEvaluator.java:1314)<br /> at ptolemy.data.expr.ParseTreeEvaluator.visitSumNode(ParseTreeEvaluator.java:1166)<br /> at ptolemy.data.expr.ASTPtSumNode.visit(ASTPtSumNode.java:129)<br /> at ptolemy.data.expr.ParseTreeEvaluator.evaluateParseTree(ParseTreeEvaluator.java:105)<br /> at ptolemy.data.expr.Variable._evaluate(Variable.java:1753)<br /> at ptolemy.data.expr.Variable._propagate(Variable.java:1848)<br /> at ptolemy.data.expr.Variable.validate(Variable.java:1484)<br /> at ptolemy.moml.MoMLParser.endDocument(MoMLParser.java:816)<br /> at com.microstar.xml.XmlParser.doParse(XmlParser.java:162)<br /> at com.microstar.xml.XmlParser.parse(XmlParser.java:132)<br /> at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1571)<br /> at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1507)<br /> at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1451)<br /> at ptolemy.moml.MoMLParser.parseFile(MoMLParser.java:1735)<br /> at org.kepler.gui.component.OpenCompositeAction.actionPerformed(OpenCompositeAction.java:147)<br /> at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)<br /> at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)<br /> at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)<br /> at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)<br /> at javax.swing.AbstractButton.doClick(AbstractButton.java:389)<br /> at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:809)<br /> at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:137)<br /> at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:850)<br /> at java.awt.Component.processMouseEvent(Component.java:6414)<br /> at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)<br /> at java.awt.Component.processEvent(Component.java:6179)<br /> at java.awt.Container.processEvent(Container.java:2084)<br /> at java.awt.Component.dispatchEventImpl(Component.java:4776)<br /> at java.awt.Container.dispatchEventImpl(Container.java:2142)<br /> at java.awt.Component.dispatchEvent(Component.java:4604)<br /> at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4618)<br /> at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)<br /> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4209)<br /> at java.awt.Container.dispatchEventImpl(Container.java:2128)<br /> at java.awt.Window.dispatchEventImpl(Window.java:2492)<br /> at java.awt.Component.dispatchEvent(Component.java:4604)<br /> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:717)<br /> at java.awt.EventQueue.access$400(EventQueue.java:82)<br /> at java.awt.EventQueue$2.run(EventQueue.java:676)<br /> at java.awt.EventQueue$2.run(EventQueue.java:674)<br /> at java.security.AccessController.doPrivileged(Native Method)<br /> at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)<br /> at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:97)<br /> at java.awt.EventQueue$3.run(EventQueue.java:690)<br /> at java.awt.EventQueue$3.run(EventQueue.java:688)<br /> at java.security.AccessController.doPrivileged(Native Method)<br /> at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)<br /> at java.awt.EventQueue.dispatchEvent(EventQueue.java:687)<br /> at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)<br /> at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)<br /> at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)<br /> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)<br /> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)<br /> at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)</code></pre> Bug #6467 (Closed): data tab no longer workshttps://projects.ecoinformatics.org/ecoinfo/issues/64672014-03-17T17:42:22ZDaniel Crawldanielcrawl@gmail.com
<p>Searching for "datos" in the data tab generates exceptions:</p>
<pre><code>[null] ERROR (org.ecoinformatics.seek.datasource.EcogridQueryDataCacheItem:doWork:110) The exception in query is <br /> [null] AxisFault<br /> [null] faultCode: {http://xml.apache.org/axis/}HTTP<br /> [null] faultSubcode: <br /> [null] faultString: (301)Moved Permanently<br /> [null] faultActor: <br /> [null] faultNode: <br /> [null] faultDetail: <br /> [null] {}:return code: 301<br /> [null] &lt;!DOCTYPE HTML PUBLIC &quot;-//IETF//DTD HTML 2.0//EN&quot;&gt;<br /> [null] &lt;html&gt;&lt;head&gt;<br /> [null] &lt;title&gt;301 Moved Permanently&lt;/title&gt;<br /> [null] &lt;/head&gt;&lt;body&gt;<br /> [null] &lt;h1&gt;Moved Permanently&lt;/h1&gt;<br /> [null] &lt;p&gt;The document has moved &lt;a href=&quot;<a class="external" href="https://knb.ecoinformatics.org/knb/services/QueryService&quot;&gt;here&lt;/a&gt;.&lt;/p">https://knb.ecoinformatics.org/knb/services/QueryService&amp;quot;&amp;gt;here&amp;lt;/a&amp;gt;.&amp;lt;/p</a>&gt;<br /> [null] &lt;hr&gt;<br /> [null] &lt;address&gt;Apache/2.2.14 (Ubuntu) Server at ecogrid.ecoinformatics.org Port 80&lt;/address&gt;<br /> [null] &lt;/body&gt;&lt;/html&gt;<br /> [null] <br /> [null] {http://xml.apache.org/axis/}HttpErrorCode:301<br /> [null] <br /> [null] (301)Moved Permanently<br /> [null] at org.apache.axis.transport.http.HTTPSender.readFromSocket(HTTPSender.java:744)<br /> [null] at org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:144)<br /> [null] at org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)<br /> [null] at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)<br /> [null] at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)<br /> [null] at org.apache.axis.client.AxisClient.invoke(AxisClient.java:165)<br /> [null] at org.apache.axis.client.Call.invokeEngine(Call.java:2784)<br /> [null] at org.apache.axis.client.Call.invoke(Call.java:2767)<br /> [null] at org.apache.axis.client.Call.invoke(Call.java:2443)<br /> [null] at org.apache.axis.client.Call.invoke(Call.java:2366)<br /> [null] at org.apache.axis.client.Call.invoke(Call.java:1812)<br /> [null] at org.ecoinformatics.ecogrid.queryservice.stub.QueryServiceStub.query(Unknown Source)<br /> [null] at org.ecoinformatics.ecogrid.queryservice.QueryServiceClient.query(Unknown Source)<br /> [null] at org.ecoinformatics.seek.datasource.EcogridQueryDataCacheItem.doWork(EcogridQueryDataCacheItem.java:101)<br /> [null] at org.kepler.objectmanager.cache.DataCacheObject.run(DataCacheObject.java:422)<br /> [null] at java.lang.Thread.run(Thread.java:695)</code></pre> Bug #6386 (Resolved): cannot drop second matlab actor on canvashttps://projects.ecoinformatics.org/ecoinfo/issues/63862014-01-16T01:22:25ZDaniel Crawldanielcrawl@gmail.com
<p>I get an error when I drop a second matlab actor on the canvas:</p>
<pre><code>[run] Error inside GetMomlFromLSID.getMoml(): Failed to set _iteration to 1: ptolemy.kernel.util.NameDuplicationException: Attempt to insert object named "iteration" into a container that already contains an object with that name.<br /> [run] Error creating alternateGetMoml!</code></pre>
<p>This doesn't occur in Vergil.</p>
<p>A workaround is to copy and paste the actor.</p> Bug #6371 (Resolved): Documentation: missing content in section 1.1.1 Featureshttps://projects.ecoinformatics.org/ecoinfo/issues/63712014-01-13T18:00:39Zben leinfelderleinfelder@nceas.ucsb.edu
<p>From the NCEAS help system:<br />-----------------<br />In the User's Manual, on page 11, just above the title 1.1.2 Architecture, the sentence ends in "...using a Seman" that's an odd end, and I suspect part of a sentence disappeared. Could you please verify and correct if necessary? Thanks in advance, Koen</p> Bug #6233 (Resolved): DirectoryListing NPE https://projects.ecoinformatics.org/ecoinfo/issues/62332013-11-21T01:22:08ZDaniel Crawldanielcrawl@gmail.com
<p>The DirectoryListing actor has an NPE:</p>
<p>java.lang.NullPointerException<br /> at ptolemy.util.RecursiveFileFilter.accept(RecursiveFileFilter.java:141)<br /> at java.io.File.list(File.java:1027)<br /> at ptolemy.util.RecursiveFileFilter.listFiles(RecursiveFileFilter.java:252)<br /> at ptolemy.actor.lib.io.DirectoryListing.fire(DirectoryListing.java:270)<br /> at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:465)</p>
<p>I'm attaching an example model that demonstrates the problem in Vergil.</p> Bug #6165 (Resolved): The names of instances of the Stop actor do not display in Mac OSX.https://projects.ecoinformatics.org/ecoinfo/issues/61652013-10-22T00:48:43ZChristopher Brookscxh@eecs.berkeley.edu
<p>On Kepler-users, Kenneth Jones wrote:</p>
<blockquote>
<p>The names of instances of the Stop actor do not display in Mac OSX. Let me know if you need more info.</p>
</blockquote>
<p>Indeed, dragging in the Stop Actor results in icons without instance names</p>