Kepler: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362012-08-17T23:39:07ZEcoinformatics Redmine
Redmine Bug #5686 (New): datasets produced by archiveDataturbineDataToMetacat workflow show samples 'slid...https://projects.ecoinformatics.org/ecoinfo/issues/56862012-08-17T23:39:07ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>Data sample times slowly increase, e.g. second by second, over time, instead of staying on expected markers. This makes for irregular, messy datasets. I would guess the problem lies with SPAN.</p>
<p>A dataset available here shows examples of this:<br /><a class="external" href="http://dev2.nceas.ucsb.edu/knb/metacat?action=read&qformat=default&sessionid=&docid=doc.1345243176506661893.1&displaymodule=entity&entitytype=dataTable&entityindex=1">http://dev2.nceas.ucsb.edu/knb/metacat?action=read&qformat=default&sessionid=&docid=doc.1345243176506661893.1&displaymodule=entity&entitytype=dataTable&entityindex=1</a></p>
<p>Some example problematic changes found within:</p>
<p>timestamps data<br />2012-08-16 00:10:09 13.302116394<br />2012-08-16 00:10:39 13.302242279<br />[SNIP]<br />2012-08-16 02:46:09 13.295635223<br />2012-08-16 02:46:39 13.295513153<br />2012-08-16 02:47:10 13.295863152 # <== slip<br />2012-08-16 02:47:40 13.296142578<br />[SNIP]<br />2012-08-16 08:09:10 13.290791512<br />2012-08-16 08:09:40 13.290988922<br />2012-08-16 08:10:11 13.290698051 # <== slip<br />2012-08-16 08:10:41 13.290913582<br />...</p> Bug #5685 (New): data isn't always chunked properlyhttps://projects.ecoinformatics.org/ecoinfo/issues/56852012-08-17T23:29:49ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>Jing ran the workflow in Windows XP today, and it produced at least one datapackage with data from different sampling rates. See:<br /><a class="external" href="http://dev2.nceas.ucsb.edu/knb/metacat?action=read&qformat=default&sessionid=&docid=doc.1345243176506661893.1&displaymodule=entity&entitytype=dataTable&entityindex=1">http://dev2.nceas.ucsb.edu/knb/metacat?action=read&qformat=default&sessionid=&docid=doc.1345243176506661893.1&displaymodule=entity&entitytype=dataTable&entityindex=1</a></p>
<p>Example change section from data from above link:</p>
<p>2012-08-16 22:18:14 13.28463459<br />2012-08-16 22:18:44 13.284519196<br />2012-08-16 22:19:14 13.284427643<br />2012-08-16 22:19:44 13.284352303<br />2012-08-16 22:20:19 13.284294128<br />2012-08-16 22:38:14 13.28584671<br />2012-08-16 22:38:15 13.28584671<br />2012-08-16 22:38:16 13.291329384</p>
<p>These were the results Jing got from the workflow for this particular sensor:</p>
<p>Sensor Name: gpp-data/CR800_Batt_Volt<br />Document URL: <a class="external" href="http://dev2.nceas.ucsb.edu/knb/metacat?action=read&qformat=default&docid=doc.1345243176506661893.1">http://dev2.nceas.ucsb.edu/knb/metacat?action=read&qformat=default&docid=doc.1345243176506661893.1</a><br />Time Range: 2012-08-16 00:10:09 ~ 2012-08-16 22:38:32<br />Number of Records: 2680<br />Sensor Name: gpp-data/CR800_Batt_Volt<br />Document URL: <a class="external" href="http://dev2.nceas.ucsb.edu/knb/metacat?action=read&qformat=default&docid=doc.1345243308947314582.1">http://dev2.nceas.ucsb.edu/knb/metacat?action=read&qformat=default&docid=doc.1345243308947314582.1</a><br />Time Range: 2012-08-16 22:38:34 ~ 2012-08-16 22:39:54<br />Number of Records: 75<br />Sensor Name: gpp-data/CR800_Batt_Volt<br />Document URL: <a class="external" href="http://dev2.nceas.ucsb.edu/knb/metacat?action=read&qformat=default&docid=doc.1345243447776683166.1">http://dev2.nceas.ucsb.edu/knb/metacat?action=read&qformat=default&docid=doc.1345243447776683166.1</a><br />Time Range: 2012-08-16 22:39:55 ~ 2012-08-17 22:37:21<br />Number of Records: 8186</p> Bug #5684 (Resolved): Add warning to archiving workflow that it must be run on one machine to not...https://projects.ecoinformatics.org/ecoinfo/issues/56842012-08-17T23:23:20ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>See <a class="external" href="http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5401">http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5401</a></p> Bug #5681 (Resolved): Tracking bug for sensor-view-0.9.0 release testinghttps://projects.ecoinformatics.org/ecoinfo/issues/56812012-08-16T21:36:47ZDerik Barseghianbarseghian@nceas.ucsb.edu
I've already gone through a few rounds of testing on Mac 10.8 and Win7.<br />During the last round Jianwu, Dan, and Jing did some testing on linux. <br />Today I cut a new sensor-view-0.9.0 to fix workflow issues. In this current round I've done the usual sensor-view testing, and run all sensor-view and demo workflows successfully except:
<ul>
<li>Matlab workflows (Matlab's giving me license errors under 10.8: <a class="external" href="http://www.mathworks.com/support/solutions/en/data/1-17RCK/index.html?s_cid=pl_LME9_r2012a">http://www.mathworks.com/support/solutions/en/data/1-17RCK/index.html?s_cid=pl_LME9_r2012a</a>)</li>
<li>the web service and REST demos, which use a webservice that is 'temporarily' down.</li>
<li>those in the 'unsupported' dir.</li>
</ul>
<p>I'm going to test on Win7 and Ubuntu 10.04, and hope to release as is soon.</p>
<p>The last thing I think that needs doing is, if we don't want people working off trunk for these webapps, for Jing to tag a 'release' of the workflow runengine and scheduler, and update any docs to refer to those tags.</p> Bug #5675 (New): new ProgressMeter demo workflows give errors when opening in sensor-view-0.9.0https://projects.ecoinformatics.org/ecoinfo/issues/56752012-08-11T02:03:33ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>There are a few errors when opening these xml workflows beneath sensor-view-0.9.0, despite working in trunk, e.g.:</p>
<p>ptolemy.kernel.util.NameDuplicationException: Attempt to insert object named "init" into a container that already contains an object with that name.</p>
<p>Even though the workflow only contains one "init" PortParameter.</p>
<p>After a kepler restart, I was able to save a copy of this workflow from beneath sensor-view-0.9.0, and can then re-open this copy without error.</p>
<p>I don't know the cause. Maybe these momls will have to be resaved using sensor-view-0.9.0, and the outreach test-patch release recreated.</p> Bug #5583 (New): Sensor Simulator controllable through Keplerhttps://projects.ecoinformatics.org/ecoinfo/issues/55832012-03-30T03:32:16ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>To start the sensor simulator you must currently use ant to compile some classes and start it. This means a user would have to download source to use the simulator.</p>
<p>I propose creating a SensorSimulator actor that invokes the SpanSim (sensor simulator). I've tried this locally, and can get the simulator to start up from within Kepler using this actor. Stopping isn't working, and parameters (the usual simulator cmd line params) and actor documentation would have to be done too, but this seems like it could be a fairly easy solution.</p> Bug #5363 (New): spanTodt performancehttps://projects.ecoinformatics.org/ecoinfo/issues/53632011-04-01T23:30:14ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>The spanTodt process is often hovering around 90% cpu usage on my gumstix (i'm currently sampling batt_volt every 5s, 2 other sensors every 30s, and we're still doing periodic (every 60s) metadata writes for each channel). I made logging pretty verbose, which probably isn't helping performance.<br />Would be good to improve this.</p> Bug #5210 (New): Focus stolen from user trying to drag components around during executionhttps://projects.ecoinformatics.org/ecoinfo/issues/52102010-10-19T20:42:35ZDerik Barseghianbarseghian@nceas.ucsb.edu
<p>When trying to drag around a component during a sensor site workflow execution, focus on the component is lost. This makes it nearly impossible to rearrange a workflow with sensors with high sampling rates.</p>
<p>Maybe this is related to how sensor actors update in the gui to show their last data points.</p> Bug #5202 (In Progress): update existing site layout with span changeshttps://projects.ecoinformatics.org/ecoinfo/issues/52022010-10-15T22:16:54ZDaniel Crawldanielcrawl@gmail.com
<p>An existing site layout should be updated with any changes performed on the SPAN server when the workflow is run. This makes sure the site layout always has the latest information about a site.</p> Bug #5171 (New): link workflow in components tree to workflow in scheduler viewhttps://projects.ecoinformatics.org/ecoinfo/issues/51712010-09-03T19:54:15ZDaniel Crawldanielcrawl@gmail.com
<p>Once a workflow has been uploaded to a repository, a user might want to schedule it for execution. To make this process easier, it'd be nice if the user could quickly navigate from the workflow entry in the components tree to the workflow entry in the scheduler view (see Figure 7). One way to do this is add a context menu entry for the workflow in the components tree that changed views and automatically selected the same workflow.</p>
<p>It would also be nice to have a link in the reverse direction: scheduler view -> workflow editor / site layout.</p> Bug #5116 (In Progress): add lat/lon to sensor metadata and use during importhttps://projects.ecoinformatics.org/ecoinfo/issues/51162010-08-02T23:19:25ZDaniel Crawldanielcrawl@gmail.com
<p>The site layout in engineering workflows can reflect the physical layout of sensors at a deployment site. If lat/lon metadata were stored on the sensor server, this location information could be used when importing a workflow into Kepler.</p>
<p>The tasks for this bug are:</p>
<p>1. see if SPAN allows lat/lon metadata per sensor<br />2. if not, try to add it<br />3. use lat/lon metadata during import</p> Bug #4773 (New): Data processing on the GPPhttps://projects.ecoinformatics.org/ecoinfo/issues/47732010-02-08T23:51:25ZIlkay Altintasaltintas@sdsc.edu
<p>Do we allow data processing on the GPP unit? Could it be a Kepler workflow, e.g., for quick QA?QC.</p> Bug #4750 (New): create wiring table guihttps://projects.ecoinformatics.org/ecoinfo/issues/47502010-02-05T18:34:25ZDaniel Crawldanielcrawl@gmail.com
<p>Create a wiring table interface that can describe all the connections between sensors and datalogger(s) at a sensor deployment. Note that this table is for documentation purposes only.</p>
<p>See figure 3 in <a class="external" href="https://kepler-project.org/developers/incubation/kepler-engineering-view-for-reap/engineering-view-plans">https://kepler-project.org/developers/incubation/kepler-engineering-view-for-reap/engineering-view-plans</a></p> Bug #4747 (New): import & export site layout to SensorMLhttps://projects.ecoinformatics.org/ecoinfo/issues/47472010-02-05T18:30:11ZDaniel Crawldanielcrawl@gmail.com
<p>Import & export engineering view site to SensorML.</p> Bug #4741 (New): create icons for engineering view componentshttps://projects.ecoinformatics.org/ecoinfo/issues/47412010-02-05T18:18:45ZDaniel Crawldanielcrawl@gmail.com
<p>Create icons for engineering view components in Kepler. This includes: sensor, datalogger, dataturbine, etc. Also, need to have different colors of the icons to show status: green, red, yellow.</p>
<p>See figures 1 and 4 in <a class="external" href="https://kepler-project.org/developers/incubation/kepler-engineering-view-for-reap/engineering-view-plans">https://kepler-project.org/developers/incubation/kepler-engineering-view-for-reap/engineering-view-plans</a></p>