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From 10/21/2005 to 11/19/2005

11/19/2005

05:10 PM Revision 2769 (metacat): New SQL tables and db upgrade scripts that define a new table stucture for identifiers and delete the previously unused accession_number table. This is in anticipation of supporting LSID identifiers. Currently these tables are unused by the servlet but are in place for discussion.
Matt Jones
04:44 PM Revision 2768 (metacat): Cleaned up AccessionNumber class to get rid of unused methods. It seems the entire accession_number table is no longer used but has not been deleted from the build. Will do in subsequent commit.
Matt Jones

11/18/2005

01:25 PM Revision 2767 (metacat): 1. Modified buildIndex() so that only one connection is used for both indexing nodes and indexing paths.
2. Modified the indexing algo so that indexing of paths is done while nodes are being indexed. Results in a much fast... sgarg
01:24 PM Revision 2766 (metacat): Change the code level of the MetacatHasDoc harvester operation from "Warning" to "Info". This is to reduce the amount of diagnostic output generated in the email reports to the site contact.
Duane Costa
01:18 PM Revision 2765 (metacat): Change the maximum code level reported to the site contact from "info" to "notice". This is to reduce the amount of diagnostic output generated in the email reports to the site contact. Diagnositcs of type "error", "warning", and "notice" will be sent to the site contact, while messages of type "info" and "debug" will not (but they will still be sent to the Harvester Administrator).
Duane Costa
01:17 PM Revision 2764 (metacat): Modified the way checkDocumentTable is accessed. Also removed the while loop from the checkDocumentTable. Now if the document is not found, the thread goes to sleep - instead of checking again. (In hope of a more bugfree code)
sgarg
01:11 PM Revision 2763 (metacat): Replaced access to NodeRecord.<variable> with NodeRecord.<getVariable>
sgarg
01:10 PM Revision 2762 (metacat): 1. Changed teh access modifier from public to private for variables
2. Added a new variable for nodedatanumerical
3. added a new constructor
sgarg
01:08 PM Revision 2761 (metacat): Moved printMessage statements to inside the if loop so that they are not printed each time getInstance is called
sgarg

11/17/2005

03:21 PM Revision 2760 (metacat): Bug #2207. Metacat Advanced Search interface.
Improvements to Advanced Search form:
(1) Delete keywordSearch() function. Not used in advanced search form.
(2) Re-i...
Duane Costa
01:27 PM Revision 2759 (metacat): Using xml_path_index instead of xml_index to find documents which havnt been indexed.
sgarg
12:37 PM Revision 2758 (metacat): Replaced hardcoded namespaces with variable defined in metacat.properties
sgarg
12:35 PM Revision 2757 (metacat): Replaced hardcoded link with ant token
sgarg
12:32 PM Revision 2756 (metacat): Modified links for the Accept, Delete and Review buttons
sgarg
12:30 PM Revision 2755 (metacat): Replaced hyperion.nceas.ucsb.edu with @mailhost@
sgarg
12:29 PM Revision 2754 (metacat): a new variable for the namepsaces to be indexed
sgarg
11:38 AM Revision 2753 (metacat): Changed logMetacat to be a local variable in MetaCatServlet to avoid any potential threading issues.
Matt Jones
05:27 PM Revision 2752 (metacat): Metacat has had problems with threading issues when accessed from ecogrid. These problems may stem from the use of shared global variables within the servlet that are not protected against threading problems. We used a lot of these, which I am eliminating in this commit. Besides final variables used as constants (which are not a problem), now there are only three unprotected variables (sessionHash, logMetacat, and conn) which are harder to eliminate. I will be discussiong this with Sid tomorrow to see how to eliminate them.
Matt Jones

11/16/2005

01:07 PM Revision 2751 (metacat): Fixed the bug that replicate data file failed that the documents records wouldn't be deleted.
Jing Tao
01:07 PM Revision 2750 (metacat): the parameter of method getRevisionTableReList is docidWithoutRev.
Jing Tao
12:38 PM Revision 2749 (metacat): Fixed bug that data file upload failed, record couldn't be deleted.
Jing Tao
10:43 AM Revision 2748 (metacat): Bug #2207. Add new build target, advancedsearchjar. This allows the Advanced Search engine to be built as a library for use in other web applications. This is important because LTER is currently using a separate web application for its interface to the Metacat data catalog, so the library allows the search engine to be used both inside and outside Metacat. Eventually LTER would like to fully re-integrate its Metacat interface with the lter skin, so eventually the need for this build target may go away.
Duane Costa
10:37 AM Revision 2747 (metacat): Bug #2207. Enable hyperlink to the Advanced Search form.
Duane Costa
10:35 AM Revision 2746 (metacat): Bug #2207. New JSPs added to the default skin to support Metacat Advanced Search interface.
Duane Costa
10:34 AM Revision 2745 (metacat): Bug #2207. Add new CSS class to set the correct iframe sizes for the Advanced Search box.
Duane Costa
10:32 AM Revision 2744 (metacat): Bug #2207. Add two new JavaScript variables to support Metacat Advanced Search interface.
Duane Costa
10:31 AM Revision 2743 (metacat): Bug #2207. Add new JavaScript function to support Metacat Advanced Search interface.
Duane Costa
10:22 AM Revision 2742 (metacat): Bug #2207. Add AdvancedSearchServlet to support Metacat Advanced Search interface.
Duane Costa
09:57 AM Revision 2741 (metacat): Bug #2207: Implementation of the Metacat Advanced Search engine.
Duane Costa
04:59 PM Revision 2740 (metacat): Fixed a bug in log
Jing Tao

11/13/2005

06:15 PM Revision 2739 (metacat): Fixed log bug when xml_revision updated failed.
Jing Tao

11/11/2005

12:15 PM Revision 2738 (metacat): Removed extra package declaration in LSID java file.
Matt Jones
12:09 PM Revision 2737 (metacat): Initial checkin of LSID support code for metacat. The LSID support here
provides access to metacat documents through an LSID identifier. The
identifier takes the form:
urn:lsid:ecoinform...
Matt Jones
10:12 AM Revision 2736 (metacat): Add new index value for distribution url.
Jing Tao
10:03 AM Revision 2735 (metacat): Added parameter to specify how long the indexing Thread should wait for the docid to show up in xml_documents
sgarg
10:01 AM Revision 2734 (metacat): Changes in calls made to IndexingQueue class
sgarg
10:00 AM Revision 2733 (metacat): A version with less number of bugs.
sgarg

11/10/2005

02:13 PM Revision 2732 (metacat): New code for run an indexing queue and indexing thread which runs every 24 hours
sgarg
01:40 PM Revision 2731 (metacat): Removed the call to indexing function in DBSAXHandler and added a call to indexing function IndexingQueue
sgarg
01:38 PM Revision 2730 (metacat): removed the indexing code from DBSAXHandler
sgarg
01:34 PM Revision 2729 (metacat): 1. Added code to start the indexing thread.
2. Fixed a bug in the query on xml_nodes and xml_index
3. Added more debug statements
4. Fixed a bug in code which de...
sgarg
01:22 PM Revision 2728 (metacat): New function which returns the formatted left join query. This is required as Oracle and postgres have different left join syntax
sgarg
01:19 PM Revision 2727 (metacat): new variables defined for the indexing threads.
sgarg

11/09/2005

11:20 AM Revision 2726 (metacat): Removed all hard links, and put the jsp page in the same context as the geoserver.
harris
06:53 PM Revision 2725 (metacat): Add more debug info.
Jing Tao

11/08/2005

02:14 PM Revision 2724 (metacat): Using join query for more efficiency.
Jing Tao
02:03 PM Revision 2723 (metacat): Add class as parent class add method.
Jing Tao
02:02 PM Revision 2722 (metacat): Add method as parent class adding method.
Jing Tao
02:02 PM Revision 2721 (metacat): Add method as parent class adding a method.
Jing Tao
02:01 PM Revision 2720 (metacat): Add a method to get doc list query.
Jing Tao
10:21 AM Revision 2719 (metacat): Fixed bug to get docid list.
Jing Tao
09:49 AM Revision 2718 (metacat): Add new command to create no-password key.
Jing Tao

11/02/2005

03:52 PM Revision 2717 (metacat): Add more info transfer.
Jing Tao
11:07 AM Revision 2716 (metacat): Modified the WARNing message
sgarg
10:31 AM Revision 2715 (metacat): Fix for bug in the previous commit
sgarg
10:16 AM Revision 2714 (metacat): Modified the debug levels of debug statements
sgarg
05:01 PM Revision 2713 (metacat): Add code to handle replication document in xml_document table.
Jing Tao

11/01/2005

02:19 PM Revision 2712 (metacat): Modification in algo:
1. Find if the root element has prefix (e.g. <eml:eml>). If found, go to step
2, otheriwse go to step 3.
2. Look ...
sgarg
02:09 PM Revision 2711 (metacat): Bugfix for 2091. Removed the function needValidation(). Added function getPrefix which returns the prefix. And use the following steps to find out the namespace
1. Find if the root element has prefix (e.g. <eml:eml>). If found, go to step
2, otheriwse go to step 3.
2. Look for...
sgarg
11:38 AM Bug #2091: Don't determine document namespace by "schemaLocation" attribute

Changing the target and severity of the bug as this bug is allowing people to
insert invalid eml documents which in...
Saurabh Garg
11:31 AM Revision 2710 (metacat): Faster script for upgrading oracle database
sgarg
11:09 AM Revision 2709 (metacat): Updated list of coordinates for OBFS sites
(Commit for Veronique Connolly by Saurabh Garg) sgarg
10:57 AM Revision 2708 (metacat): Bugfix in the searches done from the skin webpages...
sgarg
10:35 AM Revision 2707 (metacat): Updated list of coordinates for UCNRS sites
(Commit for Veronique Connolly by Saurabh Garg) sgarg
09:38 AM Revision 2706 (metacat): Change in obfs homepage so that search uses a radio button instead of check box
sgarg
09:35 AM Revision 2705 (metacat): Change in nrs homepage so that search uses a radio button instead of check box
sgarg
09:14 AM Revision 2704 (metacat): Change in nceas homepage so that search uses a radio button instead of check box
sgarg
05:24 PM Revision 2703 (metacat): Add code to handle catalog is null when inserting xml_revisions table.
Jing Tao
04:19 PM Revision 2702 (metacat): Add code to handle write record into xml_documents when catalog id is null.
Jing Tao

10/31/2005

12:56 PM Revision 2701 (metacat): Bugfix to the code which sets parentnodeid in xml_path_index. (Use setInt instead of setFloat)
sgarg
11:40 AM Revision 2700 (metacat): Added some documentation and did a little cleanup.
harris
09:26 AM Revision 2699 (metacat): Continued work -- now the user can get info on all layers servered by the wms, including the metacat docs.
harris

10/28/2005

12:20 PM Bug #2060: Documents not indexed because of error generated during indexing of documents
Increasing severity to Blocking. This is after the update on KNB. The build
index thread is failing on a more regula...
Saurabh Garg

10/27/2005

04:46 PM Revision 2698 (metacat): Removed sql syntax not acceptable by Oracle.
sgarg
04:15 PM Revision 2697 (metacat): Changed the filter and ldapbase values in getUserInfo so that it works for both NCEAS and LTER ldap
sgarg
02:46 PM Bug #2236: metacat parser allows eml with missing content

Here is the link to the document that Margaret is talking about:
http://metacat.nceas.ucsb.edu/knb/metacat?action=re...
Saurabh Garg
02:13 PM Bug #2236 (Resolved): metacat parser allows eml with missing content
Incomplete packages are allowed by the EML parser in metacat and at knb
(http://knb.ecoinformatics.org/emlparser/ind...
Margaret O'Brien
02:28 PM Bug #2237 (Resolved): web.xml, tomcat and jstl
I've been using JSP and Java Standard Tag Library functions with files in
metacat, and got tomcat5 errors because to...
Margaret O'Brien

10/26/2005

02:20 PM Revision 2695 (metacat): Bugfix in the query sent to metacat
sgarg
10:17 AM Revision 2694 (metacat): Bugfix in the metacat query generated in javascript
sgarg
09:44 AM Revision 2693 (metacat): Bug fix in the changes made in previous commit
sgarg

10/25/2005

02:54 PM Revision 2692 (metacat): changed old link for Long-Term Studies Section to current link
bowdish
02:51 PM Revision 2691 (metacat): this file is used in Fireworks to make the header and the slices
bowdish
05:11 PM Revision 2690 (metacat): Added warning to be displayed in the log when document is not inserted.
sgarg
05:09 PM Revision 2689 (metacat): 1. useSiteCoord option is made avaiable again
2. contact email address can be made required. sgarg

10/24/2005

03:06 PM Revision 2688 (metacat): Interim checkin -- getting the postgis database setup
harris

10/21/2005

01:26 PM Revision 2687 (metacat): Added lter to list of orgs.
Matt Jones
09:23 AM Bug #2207: Advanced Search integration
Advanced Search Design and Implementation Plan
The Advanced Search interface was originally designed and implemente...
Duane Costa
 

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