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metacat / src / edu / ucsb / nceas / metacat / dataone @ 6394

# Date Author Comment
6394 09/06/2011 11:55 AM ben leinfelder

use InvalidRequest when the PID is not found.

6391 09/02/2011 01:57 PM ben leinfelder

use Permission.REPLICATE not EXECUTE

6390 09/02/2011 01:41 PM ben leinfelder

check with the CN if replication is allowed for the object in question for getReplica()

6389 09/02/2011 12:45 PM ben leinfelder

add getReplica() implementation. same as get() but with different logging. seems silly, but maybe I missed something important that distinguishes this method.

6384 08/31/2011 02:36 PM Chris Jones

Update classes to use the DataONE 0.6.4 schema and types. Major changes involve using BigInteger vs long in SystemMetadata.size, and using ObjectFormatIdentifier rather than Object format.

6382 08/10/2011 04:24 PM Chris Jones

Insert system metadata after the data object is inserted.

6378 08/03/2011 10:46 AM ben leinfelder

latest D1 jars - changes include:
updateSystemMetadata() impl for CN
new identifier methods (generate is its own method)
removal of the resourceMap pointer from system metadata

6376 07/29/2011 08:14 AM Chris Jones

Update the d1 common java jar to include the changes to BaseException, and update MNodeService.synchronizationFailed() to use the BaseException.getNodeId() method to report which node the exception came from.

6373 07/28/2011 11:10 AM ben leinfelder

use correct enum method

6371 07/28/2011 10:50 AM ben leinfelder

refactor Constants

6367 07/28/2011 10:10 AM ben leinfelder

remove ServiceTypeUtil - replace with TypeMarshaller

6366 07/27/2011 04:25 PM ben leinfelder

use new "v1" types from DataONE

6362 07/20/2011 03:00 PM ben leinfelder

remove CrudService -- replaced by MNodeService and CNodeService

6358 07/20/2011 11:39 AM ben leinfelder

use the ObjectFormat Id (not toString()) to check against the configured science metadata formats

6354 07/19/2011 08:09 AM Chris Jones

Return the new pid (not the obsoleted pid) on update(), and set the correct system metadata.

6353 07/15/2011 07:11 AM Chris Jones

In D1NodeService.getLogRecords(), don't pass in null start and count params - set them to the defaults (0 and 1000).

6351 07/14/2011 09:25 PM Chris Jones

In MNodeService.getCapabilities(), update the properties to match those in Flesh out the NodeHealth object, adding NodeState, Ping, and Status information. Flesh out the Synchronization object information, but for now, use mock values. TODO: This should be determined from configuration and on-the-fly information.

6347 07/14/2011 02:25 PM Chris Jones

In MNodeService.getCapabilities(), set the synchronization and replication properties of the node.

6345 07/14/2011 02:06 PM Chris Jones

In MNodeService.getCapabilities(), set the serviceAvailable for each service supported.

6343 07/14/2011 01:20 PM Chris Jones

In MNodeService.getCapabilities(), set the serviceVersion for each service supported.

6341 07/14/2011 09:15 AM ben leinfelder

check reservation before create/update

6340 07/14/2011 01:52 AM Chris Jones

Use D1 properties to set node values, and add the 'WAR VERSION' back into the node name for deployments.

6339 07/13/2011 03:09 PM ben leinfelder

add hasReservation() method (NotImplemented, however)

6337 07/12/2011 03:02 PM ben leinfelder

use objectFormatIdentifier for listObjects()
remove provisional system metadata indicator - Metacat will not implement reserveIdentifier()

6334 07/11/2011 11:46 AM ben leinfelder

consistently construct username/groups for MetacatHandler calls - also consistently call isAuthorized

6332 07/08/2011 04:48 PM ben leinfelder

provisional replicate() implementation -- does not check if the session's subject is "allowed" to do this.
the test also requires 2 servers -- right now it attempts to replicate with itself which will fail because of duplicate IDs

6331 07/08/2011 04:05 PM ben leinfelder

provisional version of getOperationStatistics() -- not clear if we are meant to aggregate by hour or by day

6330 07/08/2011 03:06 PM ben leinfelder

provisional getCapabilities() implementation. Much of the synchronization information and node health is omitted.

6323 07/08/2011 02:08 PM ben leinfelder

simplify the get() method -- no need to use temp files for this operation

6321 07/07/2011 03:14 PM ben leinfelder

implement d1 paging for the log record results

6313 07/07/2011 12:51 PM ben leinfelder

save systemmetadata when create() is called

6311 07/07/2011 12:18 PM ben leinfelder

allow very minimal system metadata for provisional entries (CN.reserveIdentifier)

6310 07/07/2011 11:05 AM Chris Jones

Fix a NullPointerException issue when the SubjectList in a Session is null.

6308 07/07/2011 05:45 AM Chris Jones

Add the missing URL delimiter when building the D1 base service URL.

6306 07/06/2011 04:29 PM ben leinfelder

allow the test to read the OFL docid

6304 07/06/2011 03:40 PM ben leinfelder

use docImpl getBytes() to preserve encoding
no need to catch an exception only to throw it (those I was playing around with looking up the fmt from the d1_common lib if it was not found on the server...but this is redundant with other client code)

6303 07/06/2011 01:35 PM ben leinfelder

remove resolve() test -- not implemented in Metacat

6302 07/06/2011 12:09 PM ben leinfelder

handle data objects (not sci meta) and also set the resulting pid so that create() can succeed

6300 07/06/2011 11:52 AM ben leinfelder

catch exceptions from system meta data query and throw service failure rather than swallowing them with an error msg

6298 07/06/2011 08:13 AM Chris Jones

Update getOperationStatistics() to reflect the change in the signature, using ObjectFormatIdentifier instead of ObjectFormat.

6294 07/05/2011 04:19 PM ben leinfelder

use super class' create() method
use string comparison for assertRelation method

6293 07/05/2011 04:18 PM ben leinfelder

beef up isAuthorized method to check for "public" access rules and also for the rights holder

6288 07/05/2011 12:33 PM Chris Jones

Use 'synchronization_failed' for the event string in synchronizationFailed(), and add a TODO to use the event enum when the 0.6.3 types are updated.

6286 07/05/2011 10:49 AM ben leinfelder

return all public objects for the search() method [for now]

6283 07/01/2011 05:21 PM ben leinfelder

add space to error message

6281 07/01/2011 05:01 PM ben leinfelder

add the old ecogrid query code (still commented out) from the old Rest handler

6278 07/01/2011 12:37 PM ben leinfelder

implement reserveIdentifier() and check whether the id is reserved when creating records (only allow the create when the Subject creating matches the Subject who reserved it -- currently stored in rightsHolder)

6276 07/01/2011 11:10 AM ben leinfelder

remove extraneous update() call when create() does the call for us

6261 06/30/2011 06:39 AM Chris Jones

Add placeholder NotImplemented exceptions for getOperationsStatistics() and getCapabilities() in MNodeService.

6260 06/30/2011 06:13 AM Chris Jones

Implement by testing for a successful database connection.

6259 06/29/2011 11:16 PM Chris Jones

Minor housekeeping - tabs to spaces.

6258 06/29/2011 11:15 PM Chris Jones

Implement update() in MNodeService. Handle both XML science metadata updates and data object updates. Keep system metadata up to date, and log the update event.

6257 06/29/2011 09:41 PM Chris Jones

Make isScienceMetadata() protected for access from subclasses.

6256 06/29/2011 09:36 PM Chris Jones

Add insertSystemMetadata() to D1NodeService, wrap the exception handling from calls to IdentifierManager.

6255 06/29/2011 09:25 PM Chris Jones

Add updateSystemMetadata() to D1NodeService as a helper method to wrap the exception handling from calls to IdentifierManager.

6254 06/29/2011 05:50 PM Chris Jones

At Ben's suggestion, add metacatUrl to D1NodeService and make it available to subclasses. Set the metacatUrl in the constructor using SystemUtil rather than all roll your own PropertyService calls. More concise. Also, log the delete event in MNodeService.delete().

6251 06/29/2011 05:07 PM Chris Jones

throw NotAllowed in MNodeService.delete() when isAuthorized() returns false.

6250 06/29/2011 04:59 PM Chris Jones

Implement the MNStorage.delete() MNodeService. There is debate about what permissions are needed to 'delete' an object (archive it in metacat terms): D1 'WRITE' (metacat 'write') or D1 CHANGE_PERMISSION (metacat 'all'). For now we are using CHANGE_PERMISSION until it is ironed out.

6245 06/29/2011 12:35 PM ben leinfelder

isAuthorized: check for nulls in Session subjects, catch any unexpected errors and deny access when in doubt

6242 06/29/2011 12:09 PM Chris Jones

Remove setParamsFromRequest() from D1NodeService. This was called (previously as CrudService) from ResourceHandler, but will be deprecated in favor of manually creating a param map for each method that needs to pass params on to MetacatHandler.

6241 06/29/2011 08:44 AM Chris Jones

Implement [MN|CN]Storage.create() in D1NodeService. Since MetacatHandler requires an IP for event logging, we pass in the metacat URL (hold over from CrudService). To do this in the abstract D1NodeService, change the constructors to take metacatUrl as a parameter and get the URL from the metacat properties file in getInstance() of the subclasses. Needs testing.

6239 06/28/2011 04:48 PM ben leinfelder

include URL in resolve() method as well as placeholder for preference

6235 06/28/2011 01:46 PM ben leinfelder

Metacat does not implement CNRegister

6234 06/28/2011 11:41 AM Chris Jones

Implement CNRead.synchronizationFailed() in MNodeService. Note: The CN URL is not yet available in the SynchronizationFailed exception, but will be once the d1_common_java exception is updated. See Once updated, change this method to explicitly state the CN URL making the call.

6233 06/28/2011 11:18 AM Chris Jones

Change to be public since it's internal to Metacat, and use read() in D1NodeService after isAuthorized() for the calling Subject from the Session object.

6230 06/28/2011 08:48 AM Chris Jones

Implement MNRead.listObjects() in MNodeService.

6229 06/28/2011 08:42 AM Chris Jones

Implement MNRead.describe() in MNodeService.

6228 06/28/2011 08:31 AM Chris Jones

Implement MNRead.getChecksum() in MNodeService.

6227 06/28/2011 08:08 AM Chris Jones

Minor formatting changes - tabs to spaces, indents, etc.

6226 06/28/2011 08:04 AM Chris Jones

Implement [MN|CN]Read.get() in D1NodeService. Added setParamsFromRequest() to pass through parameters from the request object. Since the D1 Authorization API doesn't specify which authentication system a subject belongs to, we don't know if the subject listed is a KNB LDAP DN. isAuthorized() may return true for a mapped identity, but we don't know the DN of the KNB identity per se. This needs to be tested.

6225 06/27/2011 02:39 PM ben leinfelder

-use every Subject in the session (alt Ids and Group membership)
-consolidate to single isAuthorized method

6223 06/27/2011 01:19 PM ben leinfelder

throw exception for unimplemented methods

6222 06/27/2011 12:22 PM ben leinfelder

implement resolve() method

6221 06/27/2011 11:56 AM ben leinfelder

implement assertRelation

6220 06/27/2011 11:41 AM ben leinfelder

implement CNReplication.setReplicationStatus() but with a note about selecting which replica's status should be set (right now it is all)

6219 06/27/2011 11:29 AM ben leinfelder

implement CNReplication.setReplicationPolicy

6218 06/27/2011 11:13 AM ben leinfelder

correction: implementation is CN-specific

6217 06/27/2011 11:12 AM ben leinfelder

implement getChecksum() in the superclass

6216 06/27/2011 11:07 AM ben leinfelder

implement getChecksum (retrieves from system metadata)

6215 06/27/2011 10:59 AM ben leinfelder

use shared get() method from superclass

6214 06/27/2011 10:55 AM ben leinfelder

use shared getLogRecords method

6213 06/27/2011 10:28 AM Chris Jones

Remove isAuthorized(), setAccessPolicy(), and getLogRecords() methods since they're implemented in the superclass.

6212 06/27/2011 10:15 AM ben leinfelder

use Permission, not Event for isAuthorized() methods

6195 06/23/2011 04:10 PM ben leinfelder

CNCoreImpl is replaced by CNodeService

6194 06/23/2011 03:58 PM ben leinfelder

implement CNAuthorization

6189 06/23/2011 02:26 PM ben leinfelder

Metacat does not implement CNIdentity - it is a stand-alone service

6188 06/23/2011 02:20 PM ben leinfelder

implement registerSystemMetadata

6187 06/23/2011 02:19 PM ben leinfelder

implement object format methods - using a separate class to do the actual metacat lookup/caching so that teh CN implementation looks cleaner

6186 06/23/2011 02:17 PM ben leinfelder

implement getLogRecords

6185 06/23/2011 01:54 PM ben leinfelder

include latest D1 common/lib changes

6179 06/22/2011 11:03 AM Chris Jones

Initial check in of the MNodeService stub methods that implement the D1 MN* interfaces. CrudService methods will be transitioned into this class. The methods follow the D1 0.6.2 API thus far.

Also changed CNodeService to reflect minor changes to the D1NodeService class.

6178 06/22/2011 08:13 AM Chris Jones

Add a static getInstance() method to CNodeService and make CNodeService a singleton.

6177 06/22/2011 08:06 AM Chris Jones

Initial check in of the CNodeService stub methods that implement the D1 CN* interfaces. CNCoreImpl methods will be transitioned into this class. The methods follow the D1 0.6.2 API thus far.

6176 06/22/2011 07:50 AM Chris Jones

CNAuthorization.isAuthorized() and MNAuthorization.isAuthorized() differ. Removed it from the base class.

6175 06/22/2011 06:12 AM Chris Jones

getChecksum() is intentionally different on the CN vs MN, so I'm removing it as a common method.

6174 06/21/2011 03:42 PM Chris Jones

Initial check in of the D1NodeService class that provides methods common to both CNodeService and MNodeService implementation classes. The common API methods are:

Methods common to CNCore and MNCore APIs

Methods common to CNRead and MNRead APIs...

6149 06/16/2011 10:33 AM ben leinfelder

take getLogRecords impl form CrudService and use in CNCoreImpl

6139 06/15/2011 08:48 AM Chris Jones

Updated CNCoreImpl to implement listFormats() and getFormat(), and changed calls to ObjectFormatCache in IdentifierManager, MetacatHandler to call getInstance(). Removed the ObjectFormatService registration from MetaCatServlet since it is replaced by CNCoreImpl.

6129 06/07/2011 12:08 PM ben leinfelder

include create() and reserveIdentifier() methods

6128 06/07/2011 11:14 AM ben leinfelder

include override annotation for register method