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metacat / src / edu / ucsb @ 4984

# Date Author Comment
4984 07/19/2009 11:18 PM daigle

Created new AuthStub class to always authenticate.

4981 07/11/2009 07:16 AM daigle

Implement stop method in services. Stop all services when shutting down metacat. This primarily keeps scheduler from hanging with open threads.

4979 07/09/2009 11:14 AM daigle

Catch exception that was leaving shape files open. Roll back transaction in this case.

4978 07/09/2009 11:13 AM daigle

Catch exception when schema exists in db but not on disk. Try to get the schema before throwing exception

4977 07/09/2009 11:12 AM daigle

remove this file. This is now handled in db update scripts.

4975 07/07/2009 10:20 AM daigle

Add upgrade scripts for 1.9.2 (scheduler tables)

4973 07/06/2009 04:55 PM daigle

Handle extracting a docid from a urn (lsid) during a read action

4971 07/06/2009 04:53 PM daigle

Beef up comments

4967 07/01/2009 10:29 AM daigle

Workflow scheduler and archiving fixes for TPC workflow engine

4959 06/18/2009 10:24 AM daigle

Added generic scheduler and workflow scheduling functionality.

4952 06/12/2009 04:47 PM daigle

Add scheduler and workflow schedule functionality

4951 06/12/2009 04:41 PM daigle

Add scheduler and workflow schedule functionality

4950 06/12/2009 04:39 PM daigle

Add archival read funtionality (jar/kar/war files)

4946 05/29/2009 02:13 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
1. Refactor the 'eml' metadataPrefix into a distinct metadataPrefix value (and corresponding crosswalk class) for each EML version:
eml-2.0.0, eml-2.0.1, eml-2.1.0. (In recent VTC discussion, we decided not to add support for the older 'beta' versions of EML 2.0.0.)...

4945 05/28/2009 11:13 AM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
1. When building the Metacat OAI-PMH catalog, modify the database query to search only for documents with public read access.
2. Change syntax used for identifiers in the repository to LSID format instead of using a URL to a specific repository....

4944 05/20/2009 09:29 AM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
Add support for request parameter "metadataPrefix=eml". This returns EML 2.1.0 records in an OAI-PMH format. EML 2.0.0 and 2.0.1 documents are first transformed to EML 2.1.0 using the eml201to210.xsl stylesheet that is packaged with the EML Utilities.

4943 05/11/2009 08:39 AM Duane Costa

Begin development for Bug 3835: Design and implement OAI-PMH compliant harvest subsystem

4936 04/29/2009 12:50 PM Chris Jones

In AuthSession, I've modified the formatOutput() method to include both the email and organization values found in the userInfo array. On successful login(), this changes the returned xml to include <email> and <organization> elements if they exist in the userInfo array. This information is useful to web client applications that need to show login status beyond just the users full name.

4871 03/26/2009 04:02 PM ben leinfelder

remove DataTranspose from core metacat - only used in FIRST skin for this 1.9.1 release

4863 03/25/2009 03:04 PM daigle

Accidentally removed ACCESS constant declaration. Restored.

4861 03/25/2009 02:41 PM daigle

Roll back replication user changes. Fix code that converts access levels to integer and to text.

4856 03/24/2009 10:17 AM daigle

Introduce replication user. Use the fileutil writer methods instead of writing directly.

4855 03/23/2009 05:02 PM ben leinfelder

new datamanager feature!
Pivot a result set (rows to columns).
Handles simplest case:
-single id column (observation)
-single pivot column (pivot)

4854 03/23/2009 02:56 PM daigle

Beef up exception handling from file utilities. Move UtilException to MetacatUtilException to eliminate conflict with similar exception in utility package.

4851 03/19/2009 10:25 AM daigle

Do not read or write zero length documents to/from disk

4841 03/13/2009 01:27 PM daigle

Use only one eml common stylesheet directory for all post 2.0.0 beta versions of eml. Point all eml versions to that directory in skin xml files.

4812 02/18/2009 04:30 PM daigle

Format indexPaths in metacat.properties. Remove from build.properties and build.xml. Move indexPath list getter from MetacatUtil to SystemUtil.

4811 02/17/2009 04:01 PM daigle

Replace System.out.println statements with logMetacat statements.

4809 02/17/2009 02:22 PM daigle

Replace System.out.println statements with logMetacat statements.

4808 02/17/2009 09:32 AM daigle

Update replication documentation and fix code so that replication log is available.

4805 02/17/2009 09:28 AM daigle

Separate the concept of a backup file location and a metacat external directory location. These can be totally different.

4803 02/11/2009 05:40 PM ben leinfelder

Fixes include:
-Overwriting existing DTDs on the filesystem if they exist and registration in the DB failed
-only registering a DTD once

4800 02/10/2009 05:25 PM ben leinfelder

do not include the column name when inserting into an auto-increment column

4799 02/10/2009 04:50 PM daigle

Make sure and write the shortcut to the backup directory to a directory in the users home.

4795 02/03/2009 04:01 PM daigle

Allow for backup properties to be written to context based subdirectory of the external configuration directory. This allow multiple instances of metacat to be run side by side.

4785 01/27/2009 04:31 PM daigle

Change name of writeTempFile to writeTempUploadFile since this instance deals with the temporary upload dir specifically

4782 01/27/2009 10:28 AM daigle

Added exception to error xml to clarify error to api.

4781 01/27/2009 10:27 AM daigle

writeTempFile was trying to write the same file as the registry. Changed to write the file to an "upload" subdirectory. Also throws IOException so errors get reported back to api.

4780 01/26/2009 04:38 PM daigle

Handle sessions with null ids gracefully.

4779 01/26/2009 04:38 PM daigle

Do not throw exception when skin metadata file is missing. Instead, remove the skin from the available skins list, write an error message to the log and continue on. This was already done for the skins properties file.

4778 01/26/2009 01:46 PM daigle

Check for null session ID when touching session.

4776 01/26/2009 10:19 AM daigle

Get the organization list from org.name.<orgname>= property. Add these values back into metacat.properties.

4769 01/21/2009 04:28 PM daigle

Don't worry about checking for user permissions when inserting a new document

4766 01/20/2009 10:09 AM daigle

Do not back up password properties

4762 01/19/2009 11:53 AM daigle

Only configure skins that are correctly configured in the skins directory.

4761 01/19/2009 11:52 AM daigle

Check for existance of backup file location at startup time.

4760 01/16/2009 04:09 PM daigle

Only show the backup configuration screen if the system cannot discover a directory.

4751 01/14/2009 04:05 PM daigle

Process affiliated ldap info

4743 01/13/2009 11:11 AM walbridge

Fix typos in error messages.

4734 01/08/2009 09:45 AM daigle

Move the logMetacat global

4733 01/08/2009 09:41 AM daigle

Only check user permissions for online data if the data already exists.

4732 01/07/2009 10:13 AM daigle

Get the metacat url from the SystemUtil.

4729 01/06/2009 10:28 AM daigle

Add back the auth.base variable to metacat.properties. Use this variable when creating ldap distinguished name.

4725 01/02/2009 08:16 AM daigle

Try to create the backup directories before creating th ebackup files.

4719 12/26/2008 04:33 PM daigle

Create a propertyService.getTestInstance method to facilitate unit tests

4712 12/26/2008 01:22 PM daigle

Add external (backup) directory discovery methods.

4711 12/26/2008 01:22 PM daigle

Remove org configuration methods since they are not used. Get the backup configuration directories when doing a bypass. Implement the refresh method.

4710 12/26/2008 01:20 PM daigle

This service now holds a registry of active services. Refreshing of services must go through this class. Also holds some common values that are discovered via servlet context.

4709 12/26/2008 01:18 PM daigle

Implement refresh methods inherited from base class

4708 12/26/2008 01:17 PM daigle

Remove the configuration directory from the PropertyService constructor

4707 12/26/2008 01:16 PM daigle

Do not worry about creating backup directories here

4706 12/26/2008 01:16 PM daigle

Use configured backup dir when discovering data directories

4705 12/26/2008 01:15 PM daigle

Do not worry about creating backup directories here

4704 12/26/2008 01:14 PM daigle

Handle backup configuration action

4703 12/26/2008 01:13 PM daigle

Class to support backup directory configuration

4702 12/26/2008 01:11 PM daigle

Deleted this file. Organization level configuration is not used.

4699 12/26/2008 01:09 PM daigle

Renamed MetaCatUtil to MetacatUtil

4698 12/26/2008 01:07 PM daigle

Renamed MetaCatUtil to MetacatUtil

4686 12/19/2008 09:44 AM daigle

Move global connection variable setters into the constructor so they are retrieved every time we get a new dbConnetion object

4685 12/18/2008 06:13 PM walbridge

Robustly handle file naming as per bug #2566 and the feedback of the scientific programmers (http://tinyurl.com/4n4jve).

4684 12/18/2008 04:14 PM daigle

revert the changes for: -- On update, check if the accession number exists in the db. If not, change the action to insert.

4683 12/18/2008 02:49 PM walbridge

Quote filenames as per RFC2616 (http://www.w3.org/Protocols/rfc2616/rfc2616-sec19.html#sec19.5.1), this prevents filename truncation on Firefox for files with spaces within the names (part of #2566).

4682 12/18/2008 02:14 PM daigle

On update, check if the accession number exists in the db. If not, change the action to insert.

4678 12/17/2008 02:17 PM daigle

Use a distributionSection object to hold a distribution and it's access.

4677 12/17/2008 02:15 PM daigle

move readerToString function to StringUtil class in utilities module.

4676 12/17/2008 02:14 PM daigle

Holds all the information for a single distribution in eml.

4675 12/17/2008 02:14 PM daigle

Change Inlinedatafilename to datafilename, since it can be the name of a regular data file

4674 12/13/2008 01:47 PM Jing Tao

Add method to save transforming message into files.

4673 12/12/2008 06:38 PM Jing Tao

Use a while loop to replace if.

4672 12/12/2008 05:59 PM Jing Tao

Add code to go through eml201 document list to transform them to eml210.

4671 12/10/2008 05:32 PM Jing Tao

Add a new class which will transform eml201 and eml 200 to eml210.

4665 12/09/2008 03:01 PM daigle

Correct the pathing for the schema directories based on OS. Leave them in the database with linux style paths (forward slashes) since the values are also used to create urls.

4664 12/09/2008 03:00 PM daigle

add debug

4663 12/09/2008 02:58 PM daigle

Discover the external (backup) directory based on OS

4662 12/09/2008 02:58 PM daigle

Discover the external (backup) directory based on OS

4661 12/09/2008 02:56 PM daigle

Add debug statements

4632 11/25/2008 12:40 PM daigle

catch and report missing skins configuration files.

4629 11/25/2008 10:50 AM daigle

Reformat file

4628 11/25/2008 09:54 AM daigle

Catch login errors and report the details via an exception.

4627 11/24/2008 03:42 PM daigle

Added code to populate moderators from metacat.properties

4619 11/24/2008 11:51 AM daigle

Add release info property to provide a brief description of the release (release candidate info mostly)

4608 11/21/2008 10:32 AM daigle

Remove application.default-style from the global configuration screen and activate it in the skins configuration.

4604 11/20/2008 11:51 AM daigle

Update metacat api documentation

4592 11/19/2008 03:26 PM daigle

Rename LDAPUtil to AuthUtil

4591 11/19/2008 03:26 PM daigle

This handles the configuration login form

4590 11/19/2008 03:25 PM daigle

Rename LDAPAdmin to AuthAdmin

4589 11/19/2008 03:25 PM daigle

Rename LDAPUtil to AuthUtil

4588 11/19/2008 03:23 PM daigle

Add a getAttributes method to pass through the getAttributes defined in the AuthInterface.

4587 11/19/2008 03:12 PM daigle

change generic authentication properties from ldap.* to auth.*

4586 11/19/2008 03:11 PM daigle

Added this class to be able to test multiple authentication strategies