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metacat / src / edu @ 10378

# Date Author Comment
10378 08/16/2017 11:14 AM Jing Tao

Use a singleton class to get the messaging client.

10377 08/14/2017 07:48 PM Jing Tao

Removed the code to initialize the index task client at the constructor.

10376 08/14/2017 04:01 PM Jing Tao

Add the client code to submit the index task to the message broker. Now I only added the code for the create method.

10370 07/22/2017 04:19 PM Chris Jones

Change isAuthorized() to prioritize user authz

Re-order the calls to userHasPermission(), isAdminAuthorized(), and isAuthoritativeMNodeAdmin() such that the user authorization comes first. This should drastically reduce the calls to CN.listNodes() and the resulting NodeList unmarsalling involved in comparing CN and MN Node Subjects to token or certificate Subjects. ...

10369 07/21/2017 06:16 PM Chris Jones

Convert System.out.println() calls

We've had these calls printing to the log on every REST call. Change them to a logger debug() level so we can filter them out.

10366 07/03/2017 04:10 PM Jing Tao

Use the EncodingUtilities method to decode a string.

10362 07/03/2017 11:37 AM Jing Tao

Add the code to handle query and view service.

10361 06/29/2017 10:44 AM Jing Tao

Add the code to read the MNPackage configuration.

10340 06/05/2017 03:35 PM Jing Tao

In the delete method, if we got not MdcDocNotFound exception, we will continue to delete the system metadata.

10338 06/02/2017 05:35 PM Jing Tao

Add the code to add the ldap group information for the given user.

10336 06/02/2017 05:29 PM Jing Tao

Add a new method to get all groups for a given user.

10334 06/02/2017 05:26 PM Jing Tao

Make a debug statement clearer.

10329 05/24/2017 05:13 PM Jing Tao

Modified the query to find the previous version of the ore document in the publish method.

10321 05/22/2017 12:52 PM Jing Tao

Fixed a bug that the eml object wasn't changed checksum but its content was modified in the publish method.

10300 05/18/2017 11:51 AM Jing Tao

Add the code to remove the pid from the identifier table if the update method failed.

10294 05/17/2017 08:45 PM Jing Tao

Add the checksum as the parameter to the method write.

10292 05/17/2017 08:42 PM Jing Tao

Add the code to computer the checksum.

10290 05/17/2017 08:39 PM Jing Tao

Add the checksum parameter to the write method.

10288 05/17/2017 08:37 PM Jing Tao

Move the checking if the checksum exists into the create method.

10286 05/17/2017 08:34 PM Jing Tao

Add the checksum parameter to the method DocumentImple.write.

10280 05/17/2017 03:32 PM Jing Tao

Add the checksum as a parameter to the method handleInsertOrUpdate.

10278 05/17/2017 03:26 PM Jing Tao

Add the checksum parameter to the handleInsertorUpdate method.

10276 05/17/2017 03:15 PM Jing Tao

Add the checksum parameter to the handleInsertAndUpdate method.

10274 05/17/2017 03:12 PM Jing Tao

Change the signature of the method handleInsertAndUpdate.

10272 05/17/2017 03:06 PM Jing Tao

Add code to check the check sum by the DigestOutputStream.

10270 05/17/2017 09:36 AM Jing Tao

Removed the duplicated code to check the checksum in the replicate method since the method D1Node.create, which is called by the replicate method, has the mechanism.

10249 05/11/2017 10:43 AM Jing Tao

Add some debug information.

10247 05/10/2017 08:12 AM Chris Jones

Change MetacatHandler.generateOutputName() to use the SystemMetadata.fileName value when it is available. Needs testing.

refs https://projects.ecoinformatics.org/ecoinfo/issues/7187

10239 05/02/2017 04:41 PM Jing Tao

Add the code to filter out the pids with white spaces in the query.

10219 04/07/2017 04:33 PM Jing Tao

Make sure it is same as branch 2.8 except the mdq stuff

10218 04/07/2017 04:29 PM Jing Tao

Still use syncFailed.getPid to get identifier in the syncFailed method.

10217 04/06/2017 04:42 PM Jing Tao

Fixed typos in the vairable name.

10216 04/06/2017 04:36 PM Jing Tao

In the synchronizationFailed method, use syncExcpetion.getIdentifier method to try before the obsoleted method getPid.

10207 04/06/2017 02:34 PM Jing Tao

Move a statement e.printStactTrace to the logMetacat.error method.

10205 04/06/2017 08:54 AM Jing Tao

In the expandRightHolder method, we don't use the parameter count=-1 to query the cn. Now we use count=200 and will use the page query to query again if it is necessary.

10202 04/05/2017 03:06 PM Jing Tao

Add the debug statement.

10201 04/05/2017 03:04 PM Jing Tao

Add the debug statement.

10193 03/14/2017 03:57 PM Jing Tao

Add more debug statement on cn.create method.

10188 03/06/2017 04:22 PM ben leinfelder

extract EML creator[s] and use those names or organizations when registering DOI with EZID. https://github.nceas.ucsb.edu/KNB/arctic-data/issues/143

10186 03/01/2017 02:16 PM Jing Tao

In the archive method, add a new mechanism to check if the local id is in the xml_revision table if it is not in the xml_documents table.

10185 03/01/2017 02:14 PM Jing Tao

Add a new method to determine if a docid and rev is in the xml_revision table.

10180 02/28/2017 02:58 PM Jing Tao

Give the users having change-permission to archive an object which is from a v1 node.

10176 02/08/2017 05:19 PM Jing Tao

Check the change of the access rules on data objects only when we need to write access rules base on the access part of the eml document.

10175 02/08/2017 05:18 PM Jing Tao

Check the change of the access rules on data objects only when we need to write access rules base on the access part of the eml document.

10173 01/17/2017 01:07 PM ben leinfelder

Ensure XML run response from quality engine. Use mock http request to ensure correct save behavior of the resulting run. https://projects.ecoinformatics.org/ecoinfo/issues/7171 and https://github.com/NCEAS/mdqengine/issues/73

10172 01/06/2017 04:36 PM ben leinfelder

Trigger MDQ when inserting or updating metadata documents. https://projects.ecoinformatics.org/ecoinfo/issues/7171 and https://github.com/NCEAS/mdqengine/issues/73

10168 12/28/2016 01:38 PM Jing Tao

Fixed a typo.

10164 12/28/2016 10:42 AM Jing Tao

The indexall action will be run on another thread.

10147 12/21/2016 02:30 PM Jing Tao

Change the param from the class field to a local variable.

10140 12/16/2016 12:02 PM Jing Tao

Change the condition that remove identifier from the identifier table in the method removeSystemMetaAndIdentifier.

10138 12/16/2016 10:48 AM Jing Tao

Add the pid in a debug statement.

10130 12/15/2016 02:41 PM Jing Tao

Add the code to check if the object does exist in the create method. If it doesn't, the system metadata and identifier will be removed.

10129 12/15/2016 02:40 PM Jing Tao

Change the calling code when the method insertOrUpdateDocument signature is changed.

10123 12/14/2016 03:18 PM Jing Tao

Add methods to determine if the object does exist with the given local id.

10118 12/13/2016 02:43 PM Jing Tao

Add some performace debug information.

10106 12/08/2016 02:15 PM Jing Tao

Add methods to check if there are circular obsoletes/obsoletedBy chains in the mn.updateSystemmetadata method.

10104 12/07/2016 04:06 PM Jing Tao

Don't share the same executor in the two classes.

10102 12/07/2016 01:34 PM Jing Tao

Call the cn.synchronize method asynchronously in the mn.updateSystemmetadata method.

10100 12/06/2016 04:38 PM Jing Tao

Add the version information on a log statement.

10098 12/06/2016 04:36 PM Jing Tao

Add the version information in a log statement.

10087 12/05/2016 05:42 PM Jing Tao

Add the class to upgrade the solr schema.

10054 11/28/2016 11:40 AM Jing Tao

Add a smart test when we set the file name for the header of "content-deposition":
When the id doesn't end with the file extention, we set the file to be id+extension.

10050 11/28/2016 10:28 AM Jing Tao

To set the content-deposition header, the cn will look the file name in the system metadata first.

10047 11/22/2016 02:55 PM Matt Jones

Fix issue in getDefaultReplicationPolicy.

Previously, under some circumstances, a ReplicationPolicy was created but was missing the optional replicationAllowed and numReplicas attributes. These are critical to the policy, so ensure they are set to sensible defaults even when property parsing errors and other issues might skip them. Added a test of this method, but I note that other methods in SystemMetadataFactory do not have unit tests and should be added if they are modified.

10041 11/09/2016 05:26 PM Jing Tao

Use the "MNRead" to replace "MNStorage" to determine the version of the MN.

10030 10/26/2016 05:10 PM Jing Tao

Change an exception to more appropriate exception.

10029 10/24/2016 04:34 PM Jing Tao

Add more checks to avoid a null exception.

10027 10/24/2016 01:36 PM Jing Tao

Add more debug statement for deleting.

10021 10/19/2016 03:29 PM Jing Tao

Add some information about pid on the log statement.

10009 10/07/2016 01:13 PM Jing Tao

Add a comment.

10008 10/07/2016 12:56 PM Jing Tao

Removing xml_access table records now is in the removing the pid from hazelcast. So remove the dupicated code.

10007 10/05/2016 05:33 PM Jing Tao

Check if the object and sysmeta are null before to get the inputstream object.

10006 10/05/2016 04:53 PM Jing Tao

Clear the code for the method handleInsertOrUpdate.

10005 10/05/2016 02:51 PM Jing Tao

The deleteSystemmetadata method will delete the records on xml_access as well.

10001 10/03/2016 02:08 PM Jing Tao

Add the identifier information in the exception when users try to change the access section but they don't have all permission.

10000 10/03/2016 12:38 PM Jing Tao

Add the guid information in the sax exception when users try to update the access part but they don't have all permission.

9999 09/29/2016 02:39 PM Jing Tao

Expand the rights holder if it is a group.

9997 09/28/2016 05:42 PM Jing Tao

Add the code to expand the rights holder if it is a group.

9988 09/14/2016 11:09 AM Jing Tao

Add more log information.

9986 09/14/2016 11:07 AM Jing Tao

Add a note to notify users that the reindex action is asynchronized.

9976 09/13/2016 01:12 PM Jing Tao

Made the class implements the interface LexicalHandler.

9974 09/13/2016 01:07 PM Jing Tao

Add code to check if a dtd is registered when the parser processes the dtd part.

9972 09/12/2016 10:20 PM Jing Tao

Fixed a bug that the public id can't be assigned.

9969 09/12/2016 09:44 PM Jing Tao

Change the debug level from debug to trace.

9964 09/09/2016 10:35 PM Jing Tao

Change some debug statments from debug to trace.

9962 09/09/2016 10:13 PM Jing Tao

Change the debug level from debug to trace.

9960 09/09/2016 09:58 PM Jing Tao

Down the debug level from debug to trace.

9958 09/09/2016 09:37 PM Jing Tao

Removed a unused parameter - formatId from method writeReplication.

9956 09/09/2016 09:17 PM Jing Tao

Add the feature to support the noNamespaceSchemalLocation and refactory the code.

9953 09/09/2016 05:30 PM Jing Tao

Add the code to throw an exception to tell users that the namespace or format id was not registered in Metacat.

9948 09/09/2016 03:14 PM Jing Tao

Add the methods to figure out the schema location base on namespace, format id or no-namespace-schema-location uri.

9946 09/09/2016 01:56 PM Jing Tao

Add a new constant for no-namespace schemas.

9944 09/09/2016 11:39 AM Jing Tao

Add a method to get the type.

9943 09/09/2016 11:38 AM Jing Tao

Add a method to get the type of the schema.

9940 09/09/2016 10:30 AM Jing Tao

Add a new class represent a schema without a namespace.

9930 09/08/2016 11:06 AM Jing Tao

Add a SAX parser to determine the namespace of a xml object. It only parses the root element, then stops.

9918 09/06/2016 03:43 PM Jing Tao

Disable the feature of downloading external schemas.

9916 09/02/2016 06:20 PM Jing Tao

Change the log information a little bit.

9913 09/02/2016 05:44 PM Jing Tao

use the new rules to validate an xml object base on dtds.

9900 08/24/2016 09:45 AM Jing Tao

Every time when we modified the metacat.properties file through the PropertyService, the Setting class will be updated as well. Otherwise, the values on the Setting class are still the old one.