Reformatted DBQuery.java for readability and consistency.
Changed printAttributeQuery() to no longer depend on the xml_index table. Now, if useXMLIndex is false, the method will use a recursive query on xml_nodes to match paths instead of using xml_index.
Some refactoring of the printExtendedSQL() methods to eliminate redundancy in the code andto provide more readable documentation.
Moved decision about whether to use xml_index forquery to the metacat.properties as "usexmlindex". Defaultis now false. Still have some refactoring to do to remove afew more uses of the xml_index table.
Created new printExtendedSQL function that can get the extendedreturn fields using only xml_nodes and not xml_index. Onestep closer to eliminating the dependence ofn xml_index.
Created test class QuerySpecificationTest and started process of removing the xml_index from the QuerySpecification code. Reformatted some classes for readability.
Removed the "getdataguide" action as it was always experimental and is no longer used in metacat or morpho.
removed the 3 versions of printPackageSQL which are no longer used by metacat. This eliminates some dependency on xml_index.
Implement Harvester Registration Servlet
Additional scheduling logic
Changes to Harvester properties
Changes to log entries
Made changes in these three files so that getPrincipal returns back more details about users and groups. Users now contain userDN, user Name and user Email. Groups now contain Group name and Group description. So some function calls which returned single string array earlier now returns multiple string arrays. AuthSession.java called one of these functions - so accordingly changes were made to fix that part of the code.
Fixed the bug for sessionid storing, revision couldn't be zero and Ldap DN is case sensitive.
Replaced Hash table with Vector of Vector datastructure in getting <param> from Query. This was done so that the results are represented in same order as they appeared in the document.
Fixed bug that version could not be zero in replication.
Additional Harvester development
Additional development of Harvester implementation
Harvester source files
Restoring AuthLdap to previous search filter. Determined that the problem wasa missing o: attribute in the UCNRS LDAP directory. Adding it in makes the oldmethod work. The change I had made caused some confusion about authenticationbecause using just uid for a filter caused too many return dn's, and it was just...
Modified LDAP authentication to support a lookup for the NRS system. Ifthe auth on the provided string fails as a DN, try to look up a newDN based on the UID. If we get a match, use that DN for auth and seeif that works. This allows us to use a referral within the...
Enabled stylesheet parameters to be passed through metacat even when the'query' function is called. Previously, query would interpret allparameters except a few hardcoded ones to be pathexpressions that should bebuilt into a squery. Now, metacat.properties contains a new configuration...
Moved the metacat.properties file from the jar file to now be located inthe tomcat context directory in WEB-INF. Now the metacat configuration iseditable in place. This change depends on a new Options.java class in theutilities module, so be sure you do a "clean" build in metacat so that you...
Improvements to Harvester single file upload servlets
This is the merge from the branch WEB_UI_REDESIGN_BRANCH back into the head.The only files that have been removed are those in lib/style/eml2; other filesthat have been cvs removed (only from lib/ and lib/style) have been re-addedelsewhere (i.e. moved from one directory to another)....
Remove unneeded file Upload999.java
If the sessionid is null and user will be treated as public.
Get rid of doctype declare in transfer.
Set system id for transforming.
Modified a method and can be reused.
If db pool size is maxium and no connection is free. The checkout will be wait.
Add a checking for xml_nodes insert finished, then start build index table.
Remove UPPER function for >, < operator.
Add a new search mode not-contains.
Modified a debug Message.
Add a new method to find document from queryspecification.
Revise code so it can be called directly.
Revied the class.
New class will be used in metacat ecogrid impl.
Updated more tests on session reuse. Made the http calls set the sessionidexplicitly rather than relying on cookies being passed around statically.Still need to modify HttpMessage to get rid of the static cookie.
New versions of the Metacat client API that allow access to the sessionIdso that a session can be reused over several different instances.
Fixed the sessionId handling code to now properly return the sessionIdin the login response message. Updated junit tests to test this issue.
Modified metacat to now provide the session identifier in the responsexml message when a login is called. This has not been fully tested.I removed the HttpMessage class from metacat in favor of using the versionof that class that is found in the utilities module. This may cause some...
Fixed a bug for importing package
Fixed the bug that if path query without xml declaration will cause a non well-formed result doc.
A sample application program to call metacat string service.
Fixed some bugs in this file.
Implementation for the interface.
Add a new client interface with string type for web service.
in toxml method, add new code to handle dtd.
Add a new constructor to hanlde DTD node.
Add code to handle public id and system id.
Implement logout method.
Add a logout method.
Implemented the update and delete methods in the interface, along with tests.
Implemented the "insert()" method and wrote a test to test it. The new testdepends on the property "newdocid" be set to something unique in the build.xmlfile so that the insert will work properly. Probably need to fix this to besome kind of autoincrement counter or random number so that it can be run...
Refactored to use IOUtil routines. Reformatted for within-file consistency.
Implement query method.
Add metacatinaccessible exception for query.
Implemented the 'read' API call. Some more to go...
Wrote the login() function, the first of the series of API calls forthe metacat client to be implemented. Also wrote a test class totest the API functionality.
If uploading failed, the inline data will be deleted either.
If xml document uploading failed, the inline data file will be deleted either.
Added a new subpackage (edu.ucsb.nceas.metacat.client) which is a clientaccess library for the metacat. There is an interface (Metacat.java) thatprovides simple access methods for the main metacat functions. This is tosupport clients like Morpho and others that want to programatically access...
JAVA 1.3 doesn't support this FileWriter(File fileName, boolean append). But 1.4 does.Change to FileWriter(String fileName, boolean append). Both 1.3 and 1.4 support.
Fixed bug in replication if doctype is null.
Fixed a bug that replication didn't do inline data.
Change a array size from 4*10(testing) to 4*1024.
Using reader replacing string to read inline data.
Using reader to replace string to read inline data.
Change the way to handle inline data.
When character size is greater than 4000, it will write to db.
Change string to stringreader to save memory.
Change debug level.
Change the year from YY to YYYY
Revise inital value for insert a new server. Change some debug level.
Revise initial value for server registry.
Fixed a bug in registryDataFile.
Delete a debug line.
Change the date format from yy-mm-dd to mm/dd/yy.
Change format from yy-mm-dd to mm/dd/yy.
Get rid of to_date function.
using toDate method rather than to_date function directly.
Revise the toDate method for sql server.
Get rid of toDate method and inherit from AbstractAdapter directly.
Get rid of toDate method. It inherentise from AbstractAdaptor.
Add a concrete method toDate which can transfer text string to date type.
Add new method to handle toDate function.
MetaCat Servlet changed to get correct docid
EML interface Login Servlet
Metacat EMl Upload Interface
got interservlet session handling working.
fixed errors with jing and my merges
changes to make session management between monarch and metacat work.
Revise code and make it more generic to pass parameters to style sheet.
Revise the code for read from metcat.
Add the code to handle parameter for style sheet.