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metacat / src @ 8427

# Date Author Comment
8427 12/10/2013 04:12 PM Jing Tao

Add method to get groups and users.

8426 12/10/2013 01:32 PM Jing Tao

Read the password from property file.

8424 12/10/2013 12:53 PM Jing Tao

Encrypt the password.

8421 12/09/2013 10:39 AM Jing Tao

Fixed an issue to check if an account exists.

8419 12/06/2013 05:57 PM Jing Tao

Add a file based authentication mechanism.

8415 12/02/2013 05:26 PM Jing Tao

when a user reset the password, we search the user to use the base=o=org,dc=ecoinformatics,dc=org and filter is uid=username.

8414 11/25/2013 01:40 PM Jing Tao

Add the code to set the replication status when some exceptions happen.

8413 11/22/2013 04:01 PM Jing Tao

Add the code to check if the stored the uidnext is a number or not.

8412 11/21/2013 07:29 PM Jing Tao

Fixed a bug that a debug message is incorrect.

8411 11/21/2013 12:27 PM Jing Tao

Add the missed the attriubtes such as uidNumber, gidNumber and et al.

8410 11/21/2013 09:55 AM Jing Tao

Get the some properties from the metacat.properties file.

8408 11/20/2013 05:29 PM Jing Tao

Add a new method to get the next avaliable uid.

8403 11/18/2013 03:10 PM Jing Tao

When start tls, the verify was changed to "require" rather than "none".

8393 11/13/2013 06:45 AM ben leinfelder

add indices for access log performance during upgrade to 2.3.0.

8369 11/05/2013 04:27 PM ben leinfelder

always return the metacat logout form when calling the perl registry logout action, even when there is no perl session to invalidate -- needed for metacatui.

8366 11/05/2013 03:27 PM ben leinfelder

include update statement for marking newer revisions

8362 11/04/2013 01:56 PM ben leinfelder

generate ORE object when publishing even if there was not an ORE for the original package. https://projects.ecoinformatics.org/ecoinfo/issues/6194

8361 11/01/2013 08:22 AM ben leinfelder

set registry permissions when configuring the exploded war on *nix systems. https://projects.ecoinformatics.org/ecoinfo/issues/4690

8360 10/31/2013 01:07 PM Jing Tao

Add the methond named isAuthoritativeMNodeAdmin method. It applies to both CN and MN methods.

8357 10/31/2013 09:31 AM ben leinfelder

actually remove the entry if it is expired (uncomment the function call). https://projects.ecoinformatics.org/ecoinfo/issues/6099

8356 10/31/2013 08:02 AM ben leinfelder

correct the createTimestamp filter and search base -- only remove inetOrgPerson entries, not any underlying structure that was added to store these temporary accounts. https://projects.ecoinformatics.org/ecoinfo/issues/6099

8355 10/30/2013 03:37 PM Chris Jones

On calls to archive(), log the correct call (not delete()).

8354 10/30/2013 12:23 PM ben leinfelder

correct some syntax errors, date filter formatting. https://projects.ecoinformatics.org/ecoinfo/issues/6099

8351 10/30/2013 10:16 AM ben leinfelder

clear temporary accounts that have not been activated after a configurable number of hours. https://projects.ecoinformatics.org/ecoinfo/issues/6099

8350 10/30/2013 08:47 AM ben leinfelder

change method name from copy and paste.

8348 10/29/2013 03:48 PM ben leinfelder

do not include default organization for the metacatui "skin"

8339 10/21/2013 01:56 PM ben leinfelder

use 2.3.0 for this next release of metacat.

8336 10/21/2013 12:44 PM ben leinfelder

make sure all versions are using 2.2.2 of some sort -- thinking of making this release a 2.3.0 release because we will be branching/tagging from the trunk, not the 2.2.x branch.

8335 10/18/2013 12:16 PM ben leinfelder

add 2 indexes to speed up dataONE log retrieval. https://projects.ecoinformatics.org/ecoinfo/issues/6161

8327 10/16/2013 05:19 PM Jing Tao

Fixed a bug that the configuration page shows complete even though the DataONE configuration hadn't done yet.

8326 10/16/2013 05:18 PM Jing Tao

Add a util class for dataone configuration.

8323 10/16/2013 04:29 PM Jing Tao

Add code the display the SchemaModification exception.

8321 10/15/2013 08:46 PM Jing Tao

Fixed a catch clause syntax which is only compatible with java 1.7.

8320 10/15/2013 03:39 PM Jing Tao

Add code the overwrite the schema.xml in the solr-home/conf.

8319 10/15/2013 03:37 PM Jing Tao

Add two scripts to update the db to 2.2.2

8314 10/14/2013 03:22 PM Jing Tao

Fixed a bug that the group information couldn't be retrived from the session.

8313 10/11/2013 04:35 PM Lauren Walker

Change the guid.ezid.uritemplate.metadata property value to the hostname only, with no context

8307 10/10/2013 01:01 PM ben leinfelder

prep project for 2.2.1 patch release -- will also merge to the 2.2.x branch.

8306 10/10/2013 12:27 PM ben leinfelder

correctly configure metacat-index to use metacat context/deployment location. https://projects.ecoinformatics.org/ecoinfo/issues/6138

8304 10/09/2013 11:52 PM Matt Jones

Reviewed code for all uses of FileInputStream, checking to see if the method should be closing the stream, and if so, closing it in the method as well as in the finally clause to ensure we don't leak file descriptors.

8303 10/09/2013 08:53 PM Jing Tao

Sparate the action reindex and reindexall.

8301 10/09/2013 02:42 PM Matt Jones

Closing some more streams that were left open. This Bug #6136 seems to be pervasive and is going to require an extensive audit to find all of the places where streams are not closed properly.

8300 10/09/2013 01:52 PM Matt Jones

Adding build files to ignore.

8299 10/09/2013 01:47 PM Matt Jones

Refactor to use IOUtils.closeQuietly() which handles nulls and streams that are already closed.

8298 10/09/2013 01:26 PM Matt Jones

Added close() to finally block for readFromFileSystem() call.

8297 10/09/2013 12:44 PM Matt Jones

Closing FileOutputStream handles so that the OS limits on filehandles are not exceeded.

8289 10/08/2013 12:04 PM ben leinfelder

add sample SSLCertificateChainFile directive to DataONE section.

8268 09/27/2013 04:44 PM Jing Tao

Add code to delete existing records for a id when we try to add the id to the index_event table.

8267 09/24/2013 04:21 PM ben leinfelder

do not modify existing SystemMetadata on MN.update() if something goes wrong during content insertion. https://projects.ecoinformatics.org/ecoinfo/issues/6101

8265 09/23/2013 03:54 PM ben leinfelder

Refer to metacat.war deployments since those are now the default. https://projects.ecoinformatics.org/ecoinfo/issues/6082

8264 09/23/2013 01:20 PM ben leinfelder

use UTF-8 if request encoding not given. https://projects.ecoinformatics.org/ecoinfo/issues/6100

8262 09/20/2013 04:36 PM Jing Tao

Remove an extra print content type statement.

8261 09/20/2013 03:26 PM Jing Tao

Add a print statment for "content type". Otherwise, the html can't show up.

8259 09/20/2013 02:42 PM ben leinfelder

do not email a specific account reset URL so that the emails can be used in multiple UI contexts. https://projects.ecoinformatics.org/ecoinfo/issues/6066

8258 09/20/2013 01:17 PM Jing Tao

Comment out some extral "contet type".

8254 09/20/2013 12:20 PM ben leinfelder

ensure all emailed links make sense for the UI that initiated them. also format referrals using the same options as the primary accounts (recursive call needed the html parameter). https://projects.ecoinformatics.org/ecoinfo/issues/6066

8253 09/20/2013 11:46 AM ben leinfelder

include optional email.overrideURL property for the account management page to send an email link that will result in a styled response. https://projects.ecoinformatics.org/ecoinfo/issues/6066

8250 09/20/2013 07:48 AM ben leinfelder

use AJAX method of including the captcha. https://projects.ecoinformatics.org/ecoinfo/issues/6098

8248 09/19/2013 05:03 PM Jing Tao

Remove an extra space in the email message.

8239 09/18/2013 03:15 PM ben leinfelder

Edit some of the instructions for activating an account. https://projects.ecoinformatics.org/ecoinfo/issues/6063

8234 09/18/2013 01:23 PM Jing Tao

Remove the knb information in the emails.

8229 09/17/2013 05:02 PM Jing Tao

Add code to handle the looking up names.

8223 09/17/2013 04:32 PM ben leinfelder

prep for 2.2.0 release. include configuration value for metacatui deployment context.

8221 09/17/2013 03:22 PM Jing Tao

Add a method to lookup users'account for the people who forgot their user name.

8220 09/17/2013 10:36 AM Jing Tao

Add code to generate dc=tmp. Clean up some code.

8217 09/16/2013 09:58 PM Jing Tao

Remove a reistriction that it didn't show the similar accounts of "ou=Account" in the user registration.

8216 09/16/2013 09:45 PM Jing Tao

Use the specific template for the verification.

8211 09/16/2013 05:00 PM Jing Tao

Fixed a bug that email verificaton doesn't work well on "ou=Account".

8210 09/16/2013 04:33 PM ben leinfelder

require authenticated session when minting a DOI/other identifier. https://projects.ecoinformatics.org/ecoinfo/issues/6086

8208 09/16/2013 03:47 PM ben leinfelder

include the dataone.subject (node admin) in the list of administrators. This allows full administrative access to objects when using certificates+d1 api. https://projects.ecoinformatics.org/ecoinfo/issues/6086

8207 09/16/2013 03:16 PM Jing Tao

Fixed a bug to split the organization list from a property file.
Fixed a bug to use a wrong object class for the ou.

8206 09/16/2013 02:31 PM Jing Tao

Pass a organization list to the template.

8202 09/16/2013 12:00 PM ben leinfelder

use optional template for registering DOIs at a given target. https://projects.ecoinformatics.org/ecoinfo/issues/6092

8201 09/16/2013 10:32 AM Jing Tao

Add code to get organization information from the ldapconfig.

8200 09/13/2013 03:53 PM ben leinfelder

only attempt to generate OREs for objects that we know not to have them already. https://projects.ecoinformatics.org/ecoinfo/issues/6061

8197 09/13/2013 03:01 PM Jing Tao

First get the email sender from the skin properties. If it is null, get it from the metacat.properties file.

8194 09/13/2013 01:25 PM Jing Tao

Reword a message for the failed verification.

8193 09/13/2013 11:12 AM ben leinfelder

Generate an ORE when sci metadata is added via the Metacat API.
https://projects.ecoinformatics.org/ecoinfo/issues/6061

8191 09/12/2013 05:12 PM Jing Tao

Add code to handle the failure of the email server.

8190 09/12/2013 04:50 PM ben leinfelder

better checking for ORE maps when publishing DOIs (need to update the packages that contain sci meta). https://projects.ecoinformatics.org/ecoinfo/issues/6061

8189 09/12/2013 01:45 PM ben leinfelder

implement ORE check method to actually query the MN for OREs that reference the given pid.
https://projects.ecoinformatics.org/ecoinfo/issues/6061

8186 09/11/2013 09:57 PM Jing Tao

Add code to check if password match in the registeration.

8185 09/11/2013 09:36 PM Jing Tao

Add the new feature for the email verification.

8184 09/11/2013 10:59 AM ben leinfelder

change hazelcast group name to match the current context. https://projects.ecoinformatics.org/ecoinfo/issues/5624

8182 09/11/2013 09:28 AM Jing Tao

Fixed a bug that the url link was not correct in the email.

8181 09/10/2013 11:03 PM Jing Tao

Send the verification email.

8180 09/10/2013 05:58 PM Jing Tao

Add code to add a user to the tmp subtree.

8178 09/10/2013 03:17 PM ben leinfelder

check both previous and current data revisions when updating packages. https://projects.ecoinformatics.org/ecoinfo/issues/5647

8177 09/10/2013 12:18 PM Jing Tao

Fixed a bug in creating a subtree.

8176 09/10/2013 07:52 AM Jing Tao

Add code to generate temporary subtree if it didn't exist.

8175 09/09/2013 05:55 PM Jing Tao

add a new subroutine to create a temporary account.

8173 09/06/2013 02:22 PM ben leinfelder

avoid SQL errors when processing very old objects of type: "-//ecoinformatics.org//eml-access-2.0.0beta6//EN"

8169 09/06/2013 07:53 AM Jing Tao

Read the recaptcha key from the metacat.properties.

8166 09/05/2013 04:58 PM Jing Tao

Add the recaptcha protection.

8164 08/26/2013 04:30 PM Jing Tao

If the pathquery engine is disabled, the xml path index queue will be disabled as well.

8163 08/26/2013 11:50 AM Jing Tao

If the xpath query is disabled, the query, squery and spatial_query action will be disabled as well.

8162 08/23/2013 04:01 PM Jing Tao

Add code to throw an exception if the pathquery is not enabled.
We also need to disable building index if the pathquery is disabled.

8160 08/22/2013 04:04 PM ben leinfelder

use consistent file names and zip content names. Opted for "-" separator so that the zip writer does not remove the unique part of the filename. https://projects.ecoinformatics.org/ecoinfo/issues/6054

8146 08/13/2013 04:16 PM ben leinfelder

[merge from branch to keep trunk up to date with upgrade history] prep for Metacat 2.1.1 release

8141 08/13/2013 12:57 PM ben leinfelder

copy the original systemMetadata when publishing a revision in order to avoid overwriting the original values - the shared map is listening! https://projects.ecoinformatics.org/ecoinfo/issues/6014