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metacat @ 6642

  • svn:ignore: build
  • svn:mergeinfo: /branches/D1_0_6_2_BRANCH:6107-6121
# Date Author Comment
6642 11/13/2011 03:50 PM Chris Jones

Although parameters for setReplicationStatus() are expected as multipart/form-data fields, they seem to be added to the HttpServletRequest as URL parameters during the proxy forwarding in d1_cn_rest_proxy. Test for their existence as multipart fields, but fall back to request params, otherwise, throw an InvalidRequest exception.

6641 11/11/2011 11:18 AM ben leinfelder

updated d1_libclient jar from trunk

6640 11/11/2011 11:17 AM ben leinfelder

updated d1_common jar from trunk

6639 11/11/2011 09:54 AM ben leinfelder

lookup stylesheet from metacat.properties for CN list objects and list formats. This is used in conjunction with the CN rest service deployment where the xslt is actually kept.

6638 11/11/2011 09:12 AM ben leinfelder

actually persist the MN id value to the properties file

6637 11/11/2011 09:06 AM ben leinfelder

set the newly assigned MN id after we call CN.register().

6636 11/11/2011 08:58 AM Chris Jones

Added stack trace debugging for CNodeService.isNodeAuthorized() for tracking down replication issues.

6635 11/10/2011 11:36 PM ben leinfelder

DataONE MN registration/configuration is now its own configuration page in the admin interface.
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5531

6634 11/10/2011 12:07 PM Chris Jones

Since we're using a multipart form to encode parameters, extract the params out of the multipart form prior to doing a get() from the multipartparams map in setReplicationStatus(). Likewise, do the same in updateReplicationMetadata() and setReplicationPolicy().

6633 11/10/2011 08:52 AM Chris Jones

New libclient jar with changes to CNode.setReplicationStatus() (r5824).

6632 11/10/2011 08:30 AM Chris Jones

Use a session object that is set to null when calling CNode.setReplicationStatus()

6631 11/10/2011 08:05 AM Chris Jones

Add debugging code to MNodeService.getReplica().

6630 11/09/2011 06:55 PM Chris Jones

Set a new Session object to null, to be overwritten by the CertificateManager session information from the X.509 certificate.

6629 11/09/2011 05:45 PM ben leinfelder

more changes for http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5527

6628 11/09/2011 04:26 PM ben leinfelder

get server param only when it is expected

6627 11/09/2011 03:34 PM ben leinfelder

check replication table (not keystore) for trusted server host name match

6626 11/09/2011 12:51 PM Chris Jones

Adding new D1 jars (r5818) with changes to libclient's CNode.setReplicationStatus(). It now sends multipart params rather than files since there's no XML structure to ReplicationStatus.

6625 11/09/2011 12:13 PM ben leinfelder

added note about PermGen space + Geoserver

6624 11/09/2011 07:14 AM Chris Jones

Fix cast to List<Node> in isNodeAuthorized().

6623 11/08/2011 04:40 PM Chris Jones

List the correct REST endpoints for replication in the documentation.

6622 11/08/2011 03:49 PM ben leinfelder

upgrade to 1.0.1-SNAPSHOT DataONE jars

6621 11/08/2011 01:59 PM ben leinfelder

check for blank key passwords

6620 11/08/2011 11:31 AM ben leinfelder

started replication unit test

6619 11/08/2011 10:36 AM Chris Jones

Keep /dirtySystemMetadata as the REST endpoint for systemMetadataChanged() for now.

6618 11/07/2011 05:16 PM Chris Jones

New D1 libraries, fix for MNode.isNodeAuthorized() and other exception handling.

6617 11/07/2011 05:03 PM Chris Jones

MockCNode.getSystemMetadata() no longer throws InvalidRequest.

6616 11/07/2011 03:53 PM ben leinfelder

add note about alternative methods for getting cert/key

6615 11/07/2011 03:50 PM ben leinfelder

use prepared statement place holder (?)

6614 11/07/2011 02:31 PM ben leinfelder

use DateTimeMarshaller for all replication date transfers

6613 11/07/2011 12:31 PM ben leinfelder

print the stacktrace when there is an error -- debuggin!

6612 11/07/2011 11:50 AM ben leinfelder

remove catch blocks for unthrown exceptions

6611 11/07/2011 10:55 AM ben leinfelder

use SSL to get content from stream

6610 11/07/2011 10:52 AM Chris Jones

Update methods in MNodeService to reflect they modifications of the MN API with regard to exceptions being raised. Largely removed InvalidRequest from a number of methods, and instead threw an appropriate NotFound or ServiceFailure instead.

6609 11/07/2011 10:01 AM Chris Jones

D1NodeService get(), getSystemMetadata(), and isAuthorized() no longer throw InvalidRequest.

6608 11/04/2011 03:17 PM Chris Jones

Add new D1 jars with 1.0.0 API additions (MNStorage.systemMetadataChanged()) and libclient fixes.

6607 11/04/2011 03:04 PM ben leinfelder

newer seek tag

6606 11/04/2011 02:45 PM ben leinfelder

uses prepared statement instead of plain old statement.
deprecated the DBConnection.createStatement() method to discourage direct parameter value use in favor of parameter binding.
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5527

6605 11/04/2011 02:35 PM Chris Jones

Add a test for systemMetadataChanged. This should be fleshed out more so that the test uses a CN certificate.

6604 11/04/2011 02:21 PM Chris Jones

Fix getReplica() handling code for getReplica() and systemMetadataChanged(). Calls to getReplica() in MNode were calling get(), so the lack of resource handling was being missed.

6603 11/04/2011 02:19 PM Chris Jones

Handle multipart params where the libclient methods are using them.

6602 11/04/2011 12:32 PM ben leinfelder

uses prepared statement parameter binding for queries
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5527

6601 11/03/2011 12:59 PM Chris Jones

Add new D1 jars with the new MNStorage.systemMetadataChanged() additions.

6600 11/03/2011 12:55 PM Chris Jones

Add in the systemMetadataChanged() method in MNodeService to respond to notifications. Only allow subjects from CNs listed in the node list to make the call. Update the local copy of the system metadata document for the given pid.

6599 11/03/2011 10:36 AM Chris Jones

Include the serialVersion in the call to CN.setReplicationStatus() after replicating data.

6598 11/02/2011 10:10 PM ben leinfelder

correctly set the prepared statement parameters for start and end date

6597 11/02/2011 10:09 PM ben leinfelder

check object format id values since they are not Comparable objects

6596 11/02/2011 09:58 PM ben leinfelder

make MNodeServiceTest pass JUnit testing

6595 11/02/2011 08:40 PM ben leinfelder

http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5527

6594 11/02/2011 08:08 PM Chris Jones

Update CNodeService test to include serialVersion in it's calls as appropriate.

6593 11/02/2011 08:04 PM Chris Jones

Update CNodeService to use the serialVersion parameter and compare it to the current serialVersion of the system metadata found in the hzSystemMetadata map. Throw an InvalidRequest exception if they are not equal. This affects updateReplicationMetadata(), setReplicationStatus(), setReplicationPolicy(), setAccessPolicy(), and setOwner().

6592 11/02/2011 08:00 PM Chris Jones

Handle calls to CNReplication REST services. Modify handle() to field calls to /replicaPolicies, /replicaMetadata, /replicaAuthorizations, and /replicaNotifications. Add the isNodeAuthorized(), setReplicationPolicy(), setReplicationStatus(), and updateReplicationMetadata() methods to parse and pass multipart form data and params on to the CNodeService implementing class....

6591 11/02/2011 07:50 PM Chris Jones

Add new d1_common jar with the API changes that add serialVersion parameters to CNAuthorization and CNReplication methods.

6590 11/02/2011 07:46 PM Chris Jones

Add support for the various CNReplication calls. Add collectReplicationPolicy() to parse the policy out of the multipart form, and collectReplicaMetadata() to parse out the replica to be updated.

6589 11/02/2011 05:32 PM ben leinfelder

restore -- apparently this was used with reflection in a test...

6588 11/02/2011 09:20 AM ben leinfelder

change to 2.0.0 release
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5515

6587 11/01/2011 07:35 PM ben leinfelder

skip verification -- remaining TODO

6586 11/01/2011 07:08 PM ben leinfelder

verify certificate

6585 11/01/2011 06:41 PM ben leinfelder

inspect keystore entries for matching client certificate

6584 11/01/2011 05:27 PM ben leinfelder

lookup the correct property for keystore file

6583 11/01/2011 04:53 PM ben leinfelder

drop old identifier when upgrading from 1.9.5 to 2.0.0

6582 11/01/2011 03:23 PM ben leinfelder

use HttpClient to set up SSL connection when doing replication calls -- this will use the server's configured certificate as the client certificate on the request. The server it is calling can then inspect that certificate and decide whether or not it trusts the caller.

6581 11/01/2011 02:09 PM ben leinfelder

use EML style tag for: only show organization when the individual is omitted
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5499

6580 11/01/2011 01:34 PM ben leinfelder

newer d1 jar (for good measure)

6579 11/01/2011 01:33 PM ben leinfelder

check client-provided certificate when servicing ReplicationServlet requests.

6578 11/01/2011 11:54 AM Chris Jones

Add updateReplicationMetadata() to the CN service implementation. This was missing from the API, and likely never called. It fully replaces the given replica item in the list of replicas in system metadata.

6577 11/01/2011 09:10 AM Chris Jones

MN.setAccessPolicy() is deprecated, commenting out the test.

6576 11/01/2011 08:59 AM Chris Jones

getReplica() should log replication events as DataONE Types.Event.replicate (vs 'getreplica')

6575 11/01/2011 08:54 AM Chris Jones

Minor indentation cleanup.

6574 11/01/2011 06:48 AM Chris Jones

Modify isAuthorized() to get the most up to date system metadata from the hzSystemMetadata map.

6573 11/01/2011 06:40 AM Chris Jones

Add a placeholder setAccessPolicy() method in MNodeService that throws NotImplemented since this method is being deprecated. Note: need to confirm that this shouldn't be calling D1Client.getCN().setAccessPolicy().

6572 11/01/2011 06:37 AM Chris Jones

Update getSystemMetadata() to lock(); get(); unlock() to ensure we have the latest version of system metadata from the hzSystemMetadata map. Remove the setAccessPolicy() method since it is being deprecated in the MNAuthorization API.
change insertSystemMetadata() to use a finer grained Date object on insertion. Locking of the pid happens in the subclass prior to the insert.

6571 11/01/2011 06:33 AM Chris Jones

Add setAccessPolicy() to CNodeService since the CN should only make changes to access policies for objects registered with the D1 system. Increment the serial version after locling and getting the most up to fdate system metadata.
Note: CCIT meeting decision says the serial version of the system metadata (during the change) should equal the current serial version, but setAccessPolicy() does not pass in the entire system metadata object, so there's no way to check. For now, increment the latest system metadata from the hzSystemMetadata map.

6570 10/31/2011 04:37 PM Chris Jones

In CNodeService, separate the CN.create() functionality from the MN.create() functionality while still using the superclass to call create(). Deal with Hazelcast locks and setting serial versions only in the CN implementation.

6569 10/31/2011 01:13 PM Chris Jones

Change updateSystemMetadata() to evaluate the incoming system metadata serial version against that found in the hzSystemMetadata map. If they are the same, do the update. If not, throw an InvalidRequest explaining that they need the most current version.

6568 10/29/2011 07:21 PM Chris Jones

Modify CNodeService's registerSystemMetadata() with support for SystemMetadata's serialVersion field. Also, use the hzSystemMetadata map for all system metadata reads using a lock on the pid in order to get the very latest version. This affected isNodeAuthorized(), getChecksum(), and assertRelation(). Since we're using Hazelcast, exceptions are masked as RuntimeException, so throw a ServiceFailure with the underlying message.

6567 10/28/2011 09:46 PM Chris Jones

Modify CNodeService's updateSystemMetadata(), setReplicationStatus(), setReplicationPolicy(), and setOwner() with support for SystemMetadata's serialVersion field. Other methods still pending an update. Use the hzSystemMetadata map for all system metadata reads using a lock on the pid in order to get the very latest version.

6566 10/28/2011 08:42 PM ben leinfelder

removing non-junit file from the test area

6565 10/28/2011 08:39 PM ben leinfelder

load hazelcast test files from the classpath rather than from rob's personal directory.

6564 10/28/2011 04:05 PM Chris Jones

SystemMetadataManager's functionality is handled by IdentifierManager. Removing it and it's test.

6563 10/28/2011 04:01 PM Chris Jones

MetadataTypeRegister is now replaced by ObjectFormatService. Removing it and it's test.

6562 10/28/2011 01:16 PM ben leinfelder

include clearer error message when UPDATE action is requested on a replicated document and we fail to successfully get a lock from the source Metacat server
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4907

6561 10/27/2011 05:51 PM ben leinfelder

move the DataONE 1.0.0-SNAPSHOT

6560 10/27/2011 04:33 PM ben leinfelder

correctly check for missing config values during geoserver configuration

6559 10/27/2011 04:05 PM ben leinfelder

call the web.xml tomcat6 not tomcat5

6558 10/27/2011 04:01 PM ben leinfelder

remove reference to tomcat5.5 in favor of tomcat6. including the "custom" start up script that used the sun jdk -- this can be configured rather than coded into the script.

6557 10/27/2011 03:59 PM ben leinfelder

correctly check for missing config values during geoserver configuration

6556 10/27/2011 03:45 PM ben leinfelder

remove reference to the "custom" /etc/init.d/tomcat6 script -- this should not be used since there are now better ways to customize the tomcat start up

6555 10/27/2011 03:27 PM ben leinfelder

use 2.0.0

6554 10/27/2011 03:21 PM ben leinfelder

-use 2.0.0 version
-use tomcat6
-use /var/lib/tomcat6 as the example tomcat home directory

6553 10/27/2011 02:22 PM ben leinfelder

use 2.0.0 -- stub out the release notes

6552 10/27/2011 02:13 PM ben leinfelder

Configure and use CertificateManager in order to act as the MN when performing replicate() and getReplica() mthods.

6551 10/27/2011 01:00 PM ben leinfelder

use logging, not system.out

6550 10/27/2011 12:40 PM ben leinfelder

change upgrade scripts/routines to use 2.0.0 version number instead of 1.10.0

6549 10/27/2011 11:35 AM ben leinfelder

make sure we close the prepared statement always

6548 10/27/2011 11:17 AM Chris Jones

The incoming source node param is just a string, not XML, so don't attempt to deserialize it. Rather, just make a new NodeReference object and set it's value to the value of the incoming param.

6547 10/27/2011 08:58 AM ben leinfelder

include CILogon link and more explanation about what is going on with the mapping.

6546 10/27/2011 08:49 AM Jing Tao

Change the version from 1.9.4 to 1.9.5.

6545 10/26/2011 11:08 AM ben leinfelder

correctly check that user is logged into metacat before proceeding

6544 10/26/2011 11:07 AM ben leinfelder

use null session for now

6543 10/25/2011 05:54 PM ben leinfelder

draft of legacy-to-d1 account mapping interface