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# Date Author Comment
5356 05/14/2010 02:55 PM berkley

changed the detailCode for DataOne exceptions to a string

5355 05/14/2010 11:18 AM berkley

added getSystemMetadata to ResourceHandler and changed the url format to be meta/guid. added a new servlet reponse handler in the web.xml file to handle the new urls and send them to the RestServlet.

5354 05/13/2010 04:28 PM Jing Tao

Change the return type from kar to the namespace.

5345 05/10/2010 04:35 PM berkley

adding stax jar. if this is somewhere else, i'll remove it, but i'm unable to find it anywhere in dataone

5320 04/19/2010 10:14 PM Matt Jones

Refactored metacat to use dataone-service-api-0.3.0 jar file, with the new JIBX generated types and serialization. Included JIBX runtime jar in metacat to handle serialization and deserialization of SystemMetadata objects. Removed the old API jar file.

5319 04/19/2010 04:51 PM Matt Jones

Modifications to support the DataONE service API version 0.1.0. For DataONE, the get() and
create() services are partially complete. Several more functions and checks need to be added to
create() before it is viable. This DataONE support is not complete, and the current support breaks the MetacatRestClientTest for the time being (this client will eventually be removed).

5311 04/14/2010 11:31 AM daigle

Merge 1.9.2 changes back into the trunk

5302 04/06/2010 06:03 PM Matt Jones

Adding commons-io jar for the IOUtils utilities for stream manipulation.

5298 04/02/2010 11:29 AM Matt Jones

Modified readFromMetacat() to pass most exceptions up the call stack, which
allows creation of new entry points for calling reads. Still need to
continue factoring out the HTTPServletResponse that is passed in in order to
make entrypoints that are not servlet based possible. Problem now is in...

5297 04/01/2010 04:30 PM Matt Jones

Excluding the Maven ant tasks jar from the metacat war distribution because
it is not needed (its only used to build dataone-service at build time, and
is unused at runtime), and it conflicts with jar files checked in for Spring
as part of the geoserver install. Also updated dataone interface...

5295 03/24/2010 12:41 AM Matt Jones

Modified the build.xml to include a new task for building the dataone
service api package, which generates a jar file that is put into lib. This
task depends on maven being installed in maven.home, and depends on the
DataONE service_api being checed out in a sibling directory to the build....

5285 03/18/2010 03:06 AM Matt Jones

Adding a new property to be used as an identifier prefix by default.

5276 03/16/2010 12:33 AM Matt Jones

Modified table structure to change identifiers table (previously unused) to
represent a mapping between arbitrary string identifiers and metacat docids.
More information in https://trac.dataone.org/ticket/361. Modifications to
Oracle schemas were made but not tested.

5224 02/11/2010 08:48 AM Matt Jones

Modified ResourceHandler to change the GET url from /objects to /object to
match the DataONE method name.

5211 02/03/2010 06:58 PM Matt Jones

Merging in REST interface implementation that was created by Serhan Akin. Main change is
a refactored MetaCatServlet.java class, in which all of the handle* methods were moved
into a separate MetacatHandler.java class. This allows both the standard MetaCatServlet...

5202 01/27/2010 09:51 AM daigle

Populate esa home links with skin property value

5187 01/07/2010 01:37 PM daigle

change dropdown select event to work on IE.

5185 01/06/2010 02:05 PM daigle

Fix main cross browser gui compatibility issues in sanparks tpc skin.

5184 01/06/2010 02:05 PM daigle

Fix main cross browser gui compatibility issues in sanparks tpc skin.

5183 01/06/2010 02:03 PM daigle

Remove commas from the end of lists because they break IE

5182 01/06/2010 11:41 AM ben leinfelder

remove the "optional" tip since it is not currently optional

5180 01/06/2010 11:38 AM ben leinfelder

add properties expected by the DB property service

5178 01/05/2010 04:07 PM ben leinfelder

use @class attribute for path queries rather than @name

5165 12/18/2009 01:26 PM daigle

add method name to log messages and create configured thresholds for warning messages

5164 12/18/2009 01:22 PM daigle

add parc-moderators to config.username

5163 12/10/2009 12:59 PM Chris Jones

I've added the PARC and PISCO organizations to the delete and confirm form templates for the data registry application.

5155 12/08/2009 09:23 AM daigle

remove registry.config.username value

5148 12/02/2009 10:40 AM daigle

added a commented out line for auth.moderators for the parc system. This will get uncommented on the parc system and the existing auth.moderators will be commented out.

5147 12/02/2009 07:22 AM Chris Jones

I've removed the value for the PARC registry.config.site property since it isn't appropriate to this skin, and causes the registry CGI to produce two organization creator elements with the same value.

5146 12/01/2009 10:15 AM daigle

hard code parc home url

5145 12/01/2009 10:03 AM daigle

Redirect data.palmyraresearch.org to parc skin

5144 11/30/2009 11:08 AM Chris Jones

I've added the PARC organization to the login form template.

5143 11/30/2009 11:02 AM Chris Jones

I've replaced hard-coded URL strings in the PARC skin files with their appropriate variables in JSP, TT2, and XSL.

5142 11/30/2009 09:58 AM Chris Jones

This updates the Registry login form to handle PARC logins. I've changed the template to load the PARC header and footer if the cfg = parc.

5141 11/25/2009 10:40 AM daigle

added parc to list of available skins.

5136 11/23/2009 10:05 AM Chris Jones

I'm adding two PARC-specific templates to the CGI templates directory. This is a temporary addition, since these templates should reside in the PARC skin. However, the NCEAS skin has templates in this location as well, and all four files will be relocated once bug #4573 has been resolved where the register and ldapweb CGIs change.

5135 11/23/2009 09:49 AM Chris Jones

I'm adding the spatial support files for the PARC skin. At the moment, the spatial option in the skin is not being used, but these files have been modified slightly from the NCEAS skin version in branding only.

5134 11/23/2009 09:47 AM Chris Jones

I've added in the XSL stylesheets for the PARC skin. The parc, parc-eml, parc-common and login stylesheets have been changed slightly for PARC branding.

5133 11/23/2009 09:44 AM Chris Jones

I'm adding the settings and map JSPs. These are placeholder files since the map is not used in the PARC skin, and the settings file merely import common settings for the skin, but doesn't modify any of the interface settings.

5132 11/23/2009 09:41 AM Chris Jones

These are the minimal images used in the PARC skin layout. The research banner comes from the research section of the PARC website.

5131 11/23/2009 09:39 AM Chris Jones

I've added the PARC CSS file, which uses colors and images found at the PARC website.

5130 11/23/2009 09:37 AM Chris Jones

These are the index files for the PARC skin. The html file provides the standard redirect to the JSP. The JSP has been PARC branded, and the layout has changed slightly to work with the http://www.palmyraresearch.org website layout (e.g. some navigation links have been removed).

5129 11/23/2009 09:34 AM Chris Jones

Here are the three javascript libraries associated with the PARC skin. The only real changes are in the search.js file, where metacat searches have absolute XPaths in the search criteria. The return fields remain as relative XPaths to be consistent with the rendering code for the skin.

5128 11/23/2009 09:32 AM Chris Jones

I'm adding the parc.cfg configuration file, which is effectively a copy of the nceas.cfg file.

5126 11/23/2009 09:29 AM Chris Jones

This is the PARC XML configuration file. I've removed the EML beta 4-6 doctype identifiers since this skin will only deal with EML 2.1.0 documents.

5125 11/23/2009 09:26 AM Chris Jones

I'm adding the Metacat metadata properties file for the PARC installation.

5124 11/23/2009 09:25 AM Chris Jones

I'm adding the properties file configured for the Palmyra Atoll Research Consortium's installation.

5123 11/23/2009 09:15 AM Chris Jones

I'm adding in the parc directory, which will contain the skin for the Palmyra Atoll Research Consortium.

5122 11/19/2009 08:19 AM ben leinfelder

special handling for RDF namespace documents (semtools project)

5121 11/13/2009 04:03 PM daigle

Start to fix I.E. gui issues

5119 11/10/2009 01:31 PM ben leinfelder

check for IE6 and show warning if they are using it

5118 11/09/2009 02:43 PM daigle

Remove seconds and minutes values from workflow scheduler and add weeks and months.

5117 11/09/2009 02:42 PM daigle

Include kar id in delete url parameters so resultset will render after delete

5106 11/06/2009 01:05 PM ben leinfelder

add id attributes for form elements (in case IE6 needed them) but it appears they are not required

5105 11/05/2009 11:34 AM ben leinfelder

add the "value" attribute for metadata tag downloads

5102 11/03/2009 06:26 PM ben leinfelder

add code block (commented out) to use in case "?column?" headers become an issue.

5101 11/03/2009 03:44 PM ben leinfelder

handle repeating "?column?" headers - somewhat naively, but consistent

5099 11/03/2009 10:31 AM daigle

Change access section in getaccesscontrol and getdocumentinfo apis to be more eml 2.1.0 compliant. Add a block access option to setaccess api.

5088 10/16/2009 11:08 AM daigle

Create workflow access pages

5087 10/15/2009 03:55 PM ben leinfelder

correct the metadata matrix for "transposed" data download
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4452

5086 10/15/2009 02:53 PM ben leinfelder

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

5085 10/15/2009 02:53 PM ben leinfelder

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

5084 10/15/2009 02:51 PM ben leinfelder

order the unions by width
addresses this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4376

5083 10/15/2009 10:42 AM ben leinfelder

include at least one metadata field and then include any that are additional (_2, _3....etc)
bug #4452

5082 10/13/2009 03:01 PM daigle

Add ability for doc owner to add user access to workflows.

5081 10/06/2009 01:58 PM ben leinfelder

allow user to specify the data columns included for the transpose data set (score, response, response file).
decided in today's CC

5080 10/06/2009 10:59 AM daigle

Only allow workflows with kars that have user write permissions to be scheduled.

5079 10/06/2009 10:58 AM daigle

Add authorization check before scheduling a job in the workflow scheduler

5075 10/06/2009 10:53 AM daigle

submit a form into a div via ajax using either form id or form object

5074 10/06/2009 10:52 AM daigle

move worflow page sections from common into the sanparks skin files

5071 10/02/2009 01:07 PM daigle

Change sanparks skin to log in with browser session instead of metacat client session so session can be validated on other pages.

5068 10/01/2009 03:04 PM ben leinfelder

choices for metadata tags to include:
1-10, increments of 1; 11-50 increments of 10

5067 10/01/2009 01:28 PM ben leinfelder

add "responsefile" column as data in the transpose
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4412

5065 09/28/2009 10:09 AM ben leinfelder

include input selection for the number of metadata fields to download
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4414

5064 09/28/2009 08:56 AM ben leinfelder

include more than just the first metadata field for questions
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4414

5063 09/25/2009 09:36 AM ben leinfelder

include download link instead of an ecogrid pointer
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4412

5062 09/24/2009 04:30 PM ben leinfelder

include ecogrid link to the external file in downloaded data

5061 09/21/2009 12:41 PM ben leinfelder

do not search across items when simply "browsing all"

5060 09/21/2009 12:38 PM ben leinfelder

comment out a debugging alert() call

5059 09/18/2009 10:09 PM ben leinfelder

use keyword field for both assessments and assessment items
remove unused query options that were in place for the mock up UI
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4387

5058 09/18/2009 04:53 PM ben leinfelder

search across items as well as assessments
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4387
note: you can switch this feature off using the checkbox provided in the search form. the search can be slow otherwise

5057 09/04/2009 03:12 PM daigle

Add session validation to metacat tpc and workflow scheduler. Fix sanparks skin session management so it always uses the logged in session id.

5055 09/03/2009 04:23 PM ben leinfelder

change to DM that preserve the order of the attributes being selected

5054 09/03/2009 02:23 PM ben leinfelder

include latest datamanager changes - notably the performance enhancement regarding attributes and table creation

5052 09/01/2009 05:29 PM ben leinfelder

do not use the jdk logging - this was being used with the datamanager for some reason (but not the rest of metacat).
we use log4j...

5049 08/31/2009 04:53 PM Jing Tao

Add code from Bill Baker, which uses certficate to login metacat.

5044 08/27/2009 12:04 PM daigle

change name of workflowjobid parameter to be workflowjobname which is more accurate

5041 08/26/2009 02:20 PM daigle

Add session Validation action and session timeout functionality.

5038 08/24/2009 02:47 PM daigle

remove base dir definitions from configuration

5037 08/24/2009 02:44 PM daigle

point workflow requests to the new workflow servlet.

5036 08/24/2009 02:43 PM daigle

Move workflow scheduler lib files into their own directory

5032 08/24/2009 02:39 PM daigle

Remove metacat web servlet that was added last week

5031 08/24/2009 02:37 PM daigle

Change location of PropertyService to properties directory

5028 08/14/2009 05:38 PM daigle

Persist skin properties across installations

5027 08/14/2009 02:26 PM daigle

Change MetaCatVersion to MetacatVersion

5024 08/13/2009 03:05 PM ben leinfelder

includes ability to select null attributes for unions

5022 08/12/2009 01:58 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Add documentation files to the 'docs/dev/oaipmh' directory. * Delete two obsolete files. * Modify class description comment in MetacatRecordFactory.java

5021 08/10/2009 01:45 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair. * Terminate harvest if login failed. * Add runHarvester.sh shell script

5020 08/07/2009 02:34 PM Duane Costa

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair.

5019 08/07/2009 11:36 AM ben leinfelder

fixes for first installation