Metacat

deprecate the old rest servlet in favor of the new D1-specific (CN/MN) versions

MN rest servlet, handler and mappings

share getSystemMetadata (before refactoring the superclass)

share getSystemMetadata (before refactoring this superclass)

add CNRestServlet and mappings for urls in the form:
/d1/cn/*
This extends existing code for CN-specific handling. MN handling will be analogous and is forthcoming

share the deserializer method with subclasses

add shared operations for authorization

share tempDir method with subclasses

make RestServlet and ResourceHandler extendible for D1 CN and MN handlers

use session member variable now that we actually have it

remove CrudService calls in favor of MNodeService

CNCoreImpl is replaced by CNodeService

include latest D1 common/lib changes

Added support in ResourceHandler for the /formats collection. Added listFormats() and getFormat() method, both of which call CNCoreImpl methods to handle the call.

When calling SystemMetadata.getObjectFormat(), return the string value of the ObjectFormatIdentifier rather than ObjectFormat.toString() (which no longer returns the fmtid string).

organize imports so that it is clearer what dependencies exist on the D1 jars

Merged in the D1_0_6_2_BRANCH changes that include the transition from ObjectFormat calls to ObjectFormatCache calls.

include CNCore implementation - only registerSystemMetadata is implemented at the moment. also - updated d1 jar (0.6.2) should be used since that is where the method is defined.
would like to consider making ResourceHandler more modular - seems like it does A LOT of different things

do not use XML files for storing SystemMetadata - use DB tables only.

In order to sync up with DataONE 0.6.1 changes, I'm backing out ObjectFormatService changes temporarily in Metacat. Most functionality will be rolled back in using the DataONE 0.6.2 tag, but some methods in ObjectFormatService (such as getListFromDisk()) will be moved into d1_libclient_java.

Changes in the DataONE ObjectFormat class deprecate the convert() method, and we're now using Metacat's ObjectFormatService to look up object format attributes. The following changes replace ObjectFormat.convert() with ObjectFormatService.getFormat() in several classes....

committing changes related to the new restservice update specification (newPid vs. obsoletedGuid)

Use SystemUtil.getContextURL() in ResourceHandler to construct the DataONE service URL (rather than direct calls to PropertyService). This handles http and https URLs, and strips the :80 or :443 for the well known ports.

improved multipart handling (improved logging messages, code, and error checking). Added exception classname to error output when the generic Exception is thrown. Added error check for cases of null value for file parts 'sysmeta' and 'object.'

Removed hardcoded D1 node type in ResourceHandler and added in a new 'dataone.nodeType' property. Also added 'dataone.coordinatingNodeBaseURL' property which points to the CN that stores the authoritative object format list. If this instance of Metacat is a CN, it may point to itself.

ResourceHandler in Metacat was set to return the KNB site URL as the MN base URL rather than the node Id. Fixed. https://redmine.dataone.org/issues/1390

added file extension for txt or csv files

fixed node response bug

fixed update problem

put the pid in the info section of the url

fixed content type problem where csv files were set as text/xml

removed debug statements

remove httpclient 3.1 and custom-built httpclient.jar
rework MetacatClient (and other classes) to use httpclient 4
updated build to not create httpclient.jar
encoding tests now pass.

some new code for debugging mmp

added more code for new mmp requests

bug fixes

refactor checksum and some other stuff

trying to get the new MMP handler working with ResourceHandler

updating commons-fileupload to 1.2.2

replicate works on metacat now. just waiting for roberts changes to the mmp clients

new mmp code

refactored MMP handling

implementing replicate

updated replicate to only use GET requests. added notes for tomorrows standup

fixed bug with http/https port

adding additional debugging info

undoing last commit

added additional debugging info

adding war version replacement token

fix for member variables but in the request wrapper

adding war version to node response

implemented health api

implemented ping

added url decoding to the filter

use detected document encoding or Metacat's default encoding (UTF-8)

fixed a bug with trailing slashes

fix for paths with semi-colons or other 'reserved' characters in them for D1 rest services

fixed bug where permission would get set to -1 for no good reason

added response type

added the root registry node response

changed d1 url to knb/d1/....

return the identifier object instead of nothing

made delete serialize the identifier

got getChecksum working. working on delete now. all tests in d1clienttest now pass

changes for new d1 schemas

changed date format a bit to get the parser to like it

implemented describeObject

adding getChecksum method

remove temp files after multipart read

got the streaming mime multipart working

still working on mmp stream parsing

working on integrating streaming mmp into resourceHandler

more work on streaming mmp support

getting closer to a non-memory bound solution for mime multipart de/encoding

changes for dataone .5 schema updates

fixing redmine task 738

fixing trac bug 828

added explicit 200 codes to ResourceHandler

added better logging and http code setting

fixed bug where the query cache was not getting reset by a REST insert/query combo.

added a todo

new todos from code review with roger

fixed mime multipart problems so that roger can try to use the d1client

fixed error where insert/update errors were not getting caught as exceptions

set the content type to text/xml for the rest interface

Set content type on listObjects to be XML so that it is recognized by clients.
Reformatted method to use original file conventions.

Reformatted code to fix indenting.

fixing another null auth token bug

hudson tests are now running. needed date conversions. still more work to do with systemmetadata date format.

updated for date format that supports time zones correctly.

added some new error handling to work around this issue https://trac.dataone.org/ticket/706

fixed bug in access control where the sessionid was not correctly passed along so changes of privileges were not being made

fixed bug where null session data was not treated properly.

fixed some bugs in time handling for listObjects and getLogRecords

added new exception handling to serialize number format exceptions for rest calls

fixed listObject bugs, added params to the listObjects rest interface, consolidated the date format passed in params

fixed query for listObjects so that paging works as advertised.

fixed error with listObjects and get.

got the crud test to pass on knb-mn, now need to figure out why the rest service still isn't working

still looking for listObjects problem