merge from branch: only check for d1 rightsholder when checking permissions in original metacat code base, otherwise legacy access control tests in metcat begin to fail. https://redmine.dataone.org/issues/7560
include check for d1 rightsholder when checking permissions in original metacat code base. https://redmine.dataone.org/issues/7560
merge from 2.5.x branch: neglected to replace solr schema during 2.5.0 upgrade - this will do it for 2.5.1.
Escape the user names, group name and other information in the xml format.
Add the keyword "select" into the list.
remove "al" prefix from subquery since we are only querying one table and do not need to use a prefix.
merge from 2.5 branch: use subquery to do paging before joining to identifier table. https://redmine.dataone.org/issues/7491
Add more statement to debug the query performance.
Use conditional method for retrieving server URL (http vs https). When metacat is configured to force SSL communication we get the https url, otherwise we get http. this allows us to use the DBTransform on localhosts that are not using SSL.
Fixed a bug that the publish method should throw an io exception.
Move the editScienceMetadata method to the MNodeService class - only update packageId in EML on publish()
Fixed a bug in the condition check for the archive field in the updateSystemMetadata method.
The archived field can't be reset to false if it is true in the systemMetadataChanged method.
Doesn't allow to reset the archived field to be false if the field is true in the updateSystemMetadata method.
In the systemMetadataChanged method, we will update system metadata when the local serial version is less than or equals the comming one.
refs #7453: modified the metacatLog message from mn.synchronizationFailed to include the syncFailed.message field. Also increased the log level to WARN.
Remove the method editScienceMetadata from the update method. This method will add a packageId attribute into the eml document. Lauren will add the method to the publish method.
In the systemMetadataChanged method, the object will be archived if the new archive value is true and old value is false.The log event is recorded in the systemMetadataChanged method as well.
Make the isAuthoritativeNode throw exception if some value is null.
In the updateSystemMetadata method, we avoid to log the event twice for archive=true.
In the setReplicationStatus method, it only notified the replicas when the status is completed. Now we added the status - failed and invalid.
use idFilter for v2 getLogRecords() to match v2 API definition.
refs #7419: refactored CNodeService implementations to not throw IdentifierNotUnique for hasReservation.
In the reindex method, the error message will be sent back.
In the create method, the modification date is reset only on the objects whose authoritative member node is v1.
In the deleteReplicationMetadata method, the modification date of the system metadata will not be reset.
Modify the text of an exception.
Add contrains for the v1/v2.registerSystemMetadata method. See https://redmine.dataone.org/issues/7380
For the v1/v2 setObsoletedBy and setRightsHolder method, they only apply the objects whose authoriative member node is v1.
Add the constrains that v1/v2.archive only applies the object whose authoritative node is a v1 node.
Add the case the mn.updateSystemMetadata and cn.updateSystemMetadata will call the archive method internally.
Refactory the mn.archive and cn.archive method so the mn.update and cn.update can reuse them.
Update the packageId attribute in EML documents on update. Never display the local docid in the rendered EML.
In the archive method, add the lock.
check for auth before doing asynch call to MN dirtySysMeta implementation
Only applies the setAccessPolicy method to objects whose authoritative mn is v1.
Add a comment to specify that the setReplicationPolicy only applys to v1.
The setReplicationPolicy method only apply to the pids whose authoritative member node has v2 MNStorage.
Add the code to check if the serialVersion object is null before it is saved to the db.
Add a flag on the systemMetadataChanged method. If it is true, the authoritative member node will only accepts the serial version and replica list; the replica node accepts everything. If it is false, it will accept everything.
Add a note for the updateSystemMetadata method.
CN.updateSystemMetadata will ignore the serial version and replica list in the comming system metadata from the mn.
Add the code to check the date of system metadata modification match in MN.updateSystemMetadata only. CN.updateSystemMetadata doesn't check.
use request query string first when handling MN.query() method. https://redmine.dataone.org/issues/7384
Commented out the code to check serial version on the updateSystemMetadata method.
Add more debug messages for the isCNAdmin method.
Put a the systemMetadataChanged method into a queue, so it will not hold the block.
Change updateReplicationMetadata() and setReplicationStatus() to no longer set the dateSysmetaModified date per our discussion on 9/16/15.
Add more debug statement for the updateSystemMetadata method.
In the getLog method, if the event is null, we will set it unknown.
If the event string is null, we will skip this log in the getLog method.
Add the code to check if we can't get the current system metadata from the node in the mn.systemMetadataChanged method.If we can't find it, an InvalidRequest will be thrown.
Fixed a bug that a client can set the original member node to be null.
Change some exceptions from the InvalidSystem to the InvalidRequest in the updateSystemMetadata method.
rollback: set session.subject so libclient can look up certificate. Seems like the default behavior may have changed?
set session.subject so libclient can look up certificate. Seems like the default behavior may have changed?
use the TypeFactory to convert the Log and ObjectFormatList objects from the v2 to v1.
In the setReplicaStatus method, if the coming status is the same one of the existing one, the system metadata will not be updated.
Fixed some incorrect exceptions in the getReplica method.
In the isAdminAuthorized method, the faiure of the isNodeAdmin method will not interrupt the next check - if it is a cn.
Fixed a bug that when the count is 0, the total is incorrect in the querySystemMetadata method.
Fixed a bug the total was not correct in the querySystemMetadata method.
Use the application/bagit-097 to replace application/bagit.
Use the TypeFactory to replace the TypeMarshaller according to the change in the d1_common_java.
Use the key word "packages" to replace the "package".
Decode the string of the uri after we break the uri into parts base on the "/".
Use the D1NodeVersionChecker to determine the mn's version rather than using ping.
When the cn.notifyReplicaNodes method, if the target MN source code is a v2 mn, we will use v2 api; if it is a v1 node, we will use v1 api.
A new class is used to get the version of service for a given node.
Only support the application/bagit format in the getPackage method.
Use the status of mn.ping to guess the version of the source node in the replicate method.
In the replicate method, it will use the v1.getReplica method if the source node only supports v1 replication service.
The code was added to compare the serial version in the updateSystemMetadata method. If the serial version in the new system metadata is less than or equals previous version, an exception will be thrown.
Increase the version number after updating the existing object's system metadata in the update method.
Fixed a possible null exception in the updateSystemmetadata method.
In the MN.updateSystemMetadata method, when we set the obsoletedBy and obsoletes method, we will check if those values already exist in other chains.
Add the identifier in the message of the exception when a client tries to reset the obsoletes or obsoletedBy fields.
Check the obosoletedBy and Obsoletes only can be set once.
The method of setReplicationstatus can be called by CNs and MNs.
merge from V2 impl: check for optional "failure" param instead of throwing exception when it is missing (often is). https://redmine.dataone.org/issues/7283
check for optional "failure" param instead of throwing exception when it is missing (often is). https://redmine.dataone.org/issues/7283
Fixed a possible null pointer exception bug. https://redmine.dataone.org/issues/7280
Only CNs can call those methods:CNCore.registerSystemMetadata()CNCore,updateSystemMetadata()CNReplication.setReplicationStatus()CNReplication.updateReplicationMetadata()CNReplication.deleteReplicationMetadata()
On mn.update and mn.updateSystemMetadata, those clients are allowed:1. CNs.2. Clients with appropriate permission calling the method on the authoritative nodes.
When compare the dateUploaded, now we use sysmetadata.getDateUploaded().getTime(). It used systemmetadata.getDateUploaded() (Date objects) to compare.
Add code to catch the BaseException in the updateSystemMetadata method.
Add the code to handle if the cn is null.
Handle multiple versions (v1 and v2) of a service in getCapacity method.
Use the NodeReference object to replace the replicaStatus to restrict the listObjects method.
[re]register DOI when system metadata is updated (typically access policy). https://projects.ecoinformatics.org/ecoinfo/issues/6796
Change the signature of listObject method - remove replicaStatus and add nodeId.
Add the code to call cn.synchroinize at the method of updateSystemMetadata.
Throw an exception if the request doesn't specify the name of the theme in the view method.
use objectFormat.extension in cases where we need to construct a filename for download. https://redmine.dataone.org/issues/3312
use v1 and v2 xsl as appropriate for rendering d1 types (object format list, mostly)
use MediaType from v2.SystemMetadata and v2.ObjectFormat to better determine mime-type, charset and filename for the get() method. https://redmine.dataone.org/issues/3309
Fixed a bug that two columns were missing in the sql command.