Metacat

refactor Constants and ServiceTypeUtil

use new "v1" types from DataONE

remove CrudService -- replaced by MNodeService and CNodeService

reset object input stream (testGet)
check for reserveIdentifier NotImplemented (expected)

Return the new pid (not the obsoleted pid) on update(), and set the correct system metadata.

include Mock version of looking up the base url for our own node - for testReplicate().
still expecting a failure during MN.replicate() since we are trying to add the replica to the same MN from which it came.

allow alternative CNode implementations (subclasses) to be returned when D1Client.getCN() is called. The alternative is given in the Settings configuration via the D1Client.cnClassName property.
MockCNode in Metacat is an example of such an alternative and is used when Metacat requires methods of a CN be present for unit testing.

Test that the obsoletes and derivedFrom system metadata fields were set correctly.

use objectFormatIdentifier for listObjects()
remove provisional system metadata indicator - Metacat will not implement reserveIdentifier()

add test for synchronization failed -- TODO: verify that the log record made it in the logs

provisional replicate() implementation -- does not check if the session's subject is "allowed" to do this.
the test also requires 2 servers -- right now it attempts to replicate with itself which will fail because of duplicate IDs

provisional version of getOperationStatistics() -- not clear if we are meant to aggregate by hour or by day

include test for replicate() method -- still fails as not implemented

allow null objects (use default checksum)

wire-up the getCapabilities() and getOperationStatistics() methods for when they are actually implemented (tests fail now)

test listObjects()

include MNAuthorization tests

refactor to use common superclass D1NodeServiceTest for shared methods

test for getLogRecords -- with some semi-reasonable expectations on the return that is expected

tests for isAuthorized and setAccessPolicy

include getLogRecords() test, though it is commented out at the moment

test for CN.getSystemMetadata()

test CN.get()

Uncommented MNStorage tests.

Send the correct Date format in testGetLogRecords(). I've commented out certain tests in the suite until isAuthorized() functionality is working. It is returning a NotFound exception even though the object is clearly in Metacat.

Add MNodeServiceTest tests for MNCore, MNRead, MNStorage, MNAuthorization implementations. MNReplication remains to be tested, as does MNCore.getCapabilities() and getOperationStatistics().

add the d1_common formats if they do not exist on the server

remove resolve() test -- not implemented in Metacat

add methods for testing CNodeService impl. Still some failing tests, but whittling them down

refactor to test the entire CN service impl

CNCoreImpl is replaced by CNodeService

Updated tests to use ObjectFormatCache.getInstance(), and added tests for CNCoreImpl.listFormats and getFormat().

When calling SystemMetadata.getObjectFormat(), return the string value of the ObjectFormatIdentifier rather than ObjectFormat.toString() (which no longer returns the fmtid string).

organize imports so that it is clearer what dependencies exist on the D1 jars

Merged in the D1_0_6_2_BRANCH changes that include the transition from ObjectFormat calls to ObjectFormatCache calls.

include GUID column for xml_access and related methods for storing/retrieving access rules

do not use XML files for storing SystemMetadata - use DB tables only.

Modified Metacat to build against the D1_SCHEMA_0_6_1 branch of the dataone schemas by incorporating the 0.6.1-SNAPSHOT version of d1_common and d1_libclient libraries, and refactoring Metacat code references to the d1 schema changed types.

updating CrudServiceTest with better exception handling (more specific) to match refactored CrudService.java class

Cleaned up imports.

Updated D1 libraries to head to eliminate problems with date parsing -- added
Joda jar to support date parsing. Removed hardcoded DN from test file. Now
CrudServiceTest is passing again.

Added a new test method testDeleteDocumentByGUID() to ensure MetacatHandler can delete based on GUID, but fall back to docid if the GUID isn't present. Modified CrudServiceTest and made some private methods public to leverage the D1 REST calls in that library (i.e. create() a doc with a GUID).

removed comments from crudservicetest

fixed bugs in listObjects

Fix the MetadataTypeRegisterTest because it had the wrong URI for METS.

added code to do database query for listObjects

fixed compile errors

uncommented tests

fixes for creating SM for legacy docs

uncommenting tests

use detected document encoding or Metacat's default encoding (UTF-8)

changed test to use actual semi-colons instead of colons

added semi-colon id test

organized code for inputstream handling

removed dependency on InputStreamToOutputStream so that exceptions will be passed correctly.

changes for new d1 schemas

uncommenting tests

implemented crud.delete

implemented crud.describe

fixed a couple bugs with dates and fixed a major bug where metacat was reading the entire document from the database everytime a DocumentImpl instance was created even though it didn't need to

fixed a bunch of small errors, did some reformatting, and fixed a bug that I thought was fixed last week

minor changes to crudservicetest

adding a test that I forgot to check in a while back

fixed error where insert/update errors were not getting caught as exceptions

fixed bug with logger where localid didn't get appended when inserting a data file

fixed update bug I introduced yesterday while fixing replication

updated for date format that supports time zones correctly.

changed date comparison to compare to gmt only

fixed bug in access control where the sessionid was not correctly passed along so changes of privileges were not being made

add back all tests

fixing date formatting and timezone issues

fixed some bugs in time handling for listObjects and getLogRecords

fixed bug in getLogRecords where the wrong id was getting set as the identifier

fixed listObject bugs, added params to the listObjects rest interface, consolidated the date format passed in params

fixed query for listObjects so that paging works as advertised.

fixed error with listObjects and get.

got the crud test to pass on knb-mn, now need to figure out why the rest service still isn't working

added a failure test to the testPublicAccess test. This test should allow public gets and listObjects but not public creates

changed getSessionData so that it will respond property to public tokens

test to check for public access to get and listObjects

adding getlogrecords to the rest interface.

changed getLogRecords to use new classes for log events

fixed bug in metacat that allowed attribute data to be appended to element data in returnfields

implementing getLogRecords

made the test functional so that it checks that missing system metadata will be created.

working on getting systemmetadata creation working for legacy knb objects

working on a function to create dataone system metadata docs for legacy metacat objects that do not have SM.

moved authentication checking out of ResourceHandler and into CrudService

added a test for access control changes

refactored the sessionService to use a correct singleton initialization scheme. Added true authentication to ResourceHandler.

new class to handle system metadata tasks in metacat

listObjects is now working for rest calls as well as crud calls

finished the crud part of listObjects. need to implement it in the rest interface now.

listObjects is almost working. need to get the result set parsed when returned to CrudService.

setting up the framework for the listObjects api call

removed system.outs

update works. it was the test that was faulty. all working now

amost have update working. still need to get unit test squared away.

removed old method that didn't do anything