Metacat

added functionality to set access permissions to system metadata the same as the document that it describes

fixed major bug in replication where the document info was being truncated due to a poorly implemented sax parser

added a DataOneLogger for event notifications on the CN. The logger is called DataOneLogger and can be managed in the log4j.properties file

refactored the sessionService to use a correct singleton initialization scheme. Added true authentication to ResourceHandler.

replication of guids now works. tested this for both forced replication and update/insert/delete triggered replication

fixed bug where guid end tag wasn't getting printed

added a method in IdentifierManager to get a guid from a docid and rev. added fields in the documentinfo replication document to pass the guid. now need to handle the guid and insert it into the table if its found

Modifications to support the DataONE service API version 0.1.0. For DataONE, the get() and
create() services are partially complete. Several more functions and checks need to be added to
create() before it is viable. This DataONE support is not complete, and the current support breaks the MetacatRestClientTest for the time being (this client will eventually be removed).

Pass the doc xml as a string to docImpl.write and writeRepication. This is so a reader can be create for the parsing and for the write to disk. Also created a db access class for xml query result deletion.

Log doc and rev query counts and times. Fix mis-spellings.