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/**
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* '$RCSfile$'
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* Purpose: A Class that implements database configuration methods
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* Copyright: 2008 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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*
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* '$Author: leinfelder $'
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* '$Date: 2012-05-18 12:09:33 -0700 (Fri, 18 May 2012) $'
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* '$Revision: 7175 $'
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program; if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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*/
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package edu.ucsb.nceas.metacat.admin;
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import java.util.Vector;
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import javax.servlet.http.HttpServletRequest;
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import javax.servlet.http.HttpServletResponse;
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import org.apache.log4j.Logger;
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import org.dataone.client.CNode;
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import org.dataone.client.D1Client;
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import org.dataone.client.auth.CertificateManager;
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import org.dataone.service.exceptions.BaseException;
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import org.dataone.service.types.v1.Node;
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import org.dataone.service.types.v1.NodeList;
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import org.dataone.service.types.v1.NodeReference;
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import org.dataone.service.types.v1.Session;
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import edu.ucsb.nceas.metacat.IdentifierManager;
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import edu.ucsb.nceas.metacat.admin.upgrade.dataone.GenerateORE;
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import edu.ucsb.nceas.metacat.admin.upgrade.dataone.GenerateSystemMetadata;
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import edu.ucsb.nceas.metacat.dataone.MNodeService;
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import edu.ucsb.nceas.metacat.properties.PropertyService;
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import edu.ucsb.nceas.metacat.shared.MetacatUtilException;
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import edu.ucsb.nceas.metacat.util.RequestUtil;
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import edu.ucsb.nceas.utilities.GeneralPropertyException;
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import edu.ucsb.nceas.utilities.PropertyNotFoundException;
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import edu.ucsb.nceas.utilities.SortedProperties;
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/**
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* Control the display of the database configuration page and the processing
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* of the configuration values.
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*/
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public class D1Admin extends MetacatAdmin {
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private static D1Admin instance = null;
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private Logger logMetacat = Logger.getLogger(D1Admin.class);
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/**
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* private constructor since this is a singleton
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*/
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private D1Admin() throws AdminException {
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}
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/**
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* Get the single instance of D1Admin.
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*
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* @return the single instance of D1Admin
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*/
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public static D1Admin getInstance() throws AdminException {
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if (instance == null) {
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instance = new D1Admin();
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}
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return instance;
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}
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/**
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* Handle configuration of the database the first time that Metacat starts
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* or when it is explicitly called. Collect necessary update information
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* from the administrator.
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*
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* @param request
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* the http request information
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* @param response
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* the http response to be sent back to the client
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*/
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public void configureDataONE(HttpServletRequest request,
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HttpServletResponse response) throws AdminException {
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String processForm = request.getParameter("processForm");
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String bypass = request.getParameter("bypass");
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String formErrors = (String) request.getAttribute("formErrors");
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if (processForm == null || !processForm.equals("true") || formErrors != null) {
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// The servlet configuration parameters have not been set, or there
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// were form errors on the last attempt to configure, so redirect to
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// the web form for configuring metacat
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try {
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// get the current configuration values
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String nodeName = PropertyService.getProperty("dataone.nodeName");
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String nodeDescription = PropertyService.getProperty("dataone.nodeDescription");
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String memberNodeId = PropertyService.getProperty("dataone.nodeId");
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String nodeSynchronize = PropertyService.getProperty("dataone.nodeSynchronize");
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String subject = PropertyService.getProperty("dataone.subject");
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String contactSubject = PropertyService.getProperty("dataone.contactSubject");
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String certpath = PropertyService.getProperty("D1Client.certificate.file");
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//the synch schedule
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String year = PropertyService.getProperty("dataone.nodeSynchronization.schedule.year");
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String mon = PropertyService.getProperty("dataone.nodeSynchronization.schedule.mon");
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String mday = PropertyService.getProperty("dataone.nodeSynchronization.schedule.mday");
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String wday = PropertyService.getProperty("dataone.nodeSynchronization.schedule.wday");
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String hour = PropertyService.getProperty("dataone.nodeSynchronization.schedule.hour");
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String min = PropertyService.getProperty("dataone.nodeSynchronization.schedule.min");
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String sec = PropertyService.getProperty("dataone.nodeSynchronization.schedule.sec");
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// the replication policies
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String nodeReplicate = PropertyService.getProperty("dataone.nodeReplicate");
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String numReplicas = PropertyService.getProperty("dataone.replicationpolicy.default.numreplicas");
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String preferredNodeList = PropertyService.getProperty("dataone.replicationpolicy.default.preferredNodeList");
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String blockedNodeList = PropertyService.getProperty("dataone.replicationpolicy.default.blockedNodeList");
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boolean synchronize = false;
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if (nodeSynchronize != null) {
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synchronize = Boolean.parseBoolean(nodeSynchronize);
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}
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boolean replicate = false;
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if (nodeReplicate != null) {
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replicate = Boolean.parseBoolean(nodeReplicate);
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}
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request.setAttribute("dataone.nodeName", nodeName);
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request.setAttribute("dataone.nodeDescription", nodeDescription);
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request.setAttribute("dataone.nodeId", memberNodeId);
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request.setAttribute("dataone.nodeSynchronize", Boolean.toString(synchronize));
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request.setAttribute("dataone.subject", subject);
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request.setAttribute("dataone.contactSubject", contactSubject);
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request.setAttribute("D1Client.certificate.file", certpath);
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// synch schedule
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request.setAttribute("dataone.nodeSynchronization.schedule.year", year);
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request.setAttribute("dataone.nodeSynchronization.schedule.mon", mon);
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request.setAttribute("dataone.nodeSynchronization.schedule.mday", mday);
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request.setAttribute("dataone.nodeSynchronization.schedule.wday", wday);
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request.setAttribute("dataone.nodeSynchronization.schedule.hour", hour);
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request.setAttribute("dataone.nodeSynchronization.schedule.min", min);
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request.setAttribute("dataone.nodeSynchronization.schedule.sec", sec);
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// replication policies
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request.setAttribute("dataone.nodeReplicate", Boolean.toString(replicate));
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request.setAttribute("dataone.replicationpolicy.default.numreplicas", numReplicas);
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request.setAttribute("dataone.replicationpolicy.default.preferredNodeList", preferredNodeList);
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request.setAttribute("dataone.replicationpolicy.default.blockedNodeList", blockedNodeList);
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// try the backup properties
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SortedProperties backupProperties = null;
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if ((backupProperties =
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PropertyService.getMainBackupProperties()) != null) {
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Vector<String> backupKeys = backupProperties.getPropertyNames();
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for (String key : backupKeys) {
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String value = backupProperties.getProperty(key);
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if (value != null) {
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request.setAttribute(key, value);
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}
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}
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}
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// set the configuration state so we know how to render the UI page buttons
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// if we have already configured once, we cannot skip this page
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request.setAttribute("configutil.dataoneConfigured", PropertyService.getProperty("configutil.dataoneConfigured"));
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// do we know if this is an update, pending verification, or a new registration?
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memberNodeId = (String) request.getAttribute("dataone.nodeId");
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boolean update = isNodeRegistered(memberNodeId);
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request.setAttribute("dataone.isUpdate", Boolean.toString(update));
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request.setAttribute("dataone.mn.registration.submitted", PropertyService.getProperty("dataone.mn.registration.submitted"));
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// enable the services?
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request.setAttribute("dataone.mn.services.enabled", PropertyService.getProperty("dataone.mn.services.enabled"));
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// Forward the request to the JSP page
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RequestUtil.forwardRequest(request, response, "/admin/dataone-configuration.jsp", null);
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} catch (GeneralPropertyException gpe) {
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throw new AdminException("D1Admin.configureDataONE - Problem getting or " +
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"setting property while initializing system properties page: " + gpe.getMessage());
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} catch (MetacatUtilException mue) {
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throw new AdminException("D1Admin.configureDataONE - utility problem while initializing "
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+ "system properties page:" + mue.getMessage());
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}
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} else if (bypass != null && bypass.equals("true")) {
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Vector<String> processingErrors = new Vector<String>();
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Vector<String> processingSuccess = new Vector<String>();
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// Bypass the D1 configuration.
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// This will keep Metacat running
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try {
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PropertyService.setProperty("configutil.dataoneConfigured", PropertyService.BYPASSED);
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} catch (GeneralPropertyException gpe) {
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String errorMessage = "D1Admin.configureDataONE - Problem getting or setting property while "
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+ "processing system properties page: " + gpe.getMessage();
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logMetacat.error(errorMessage);
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processingErrors.add(errorMessage);
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}
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try {
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if (processingErrors.size() > 0) {
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RequestUtil.clearRequestMessages(request);
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RequestUtil.setRequestErrors(request, processingErrors);
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RequestUtil.forwardRequest(request, response, "/admin", null);
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} else {
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// Reload the main metacat configuration page
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processingSuccess.add("DataONE configuration successfully bypassed");
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RequestUtil.clearRequestMessages(request);
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RequestUtil.setRequestSuccess(request, processingSuccess);
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RequestUtil.forwardRequest(request, response,
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"/admin?configureType=configure&processForm=false", null);
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}
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} catch (MetacatUtilException mue) {
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throw new AdminException("D1Admin.configureDataONE - utility problem while processing dataone page: "
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+ mue.getMessage());
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}
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} else {
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// The configuration form is being submitted and needs to be
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// processed, setting the properties in the configuration file
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// then restart metacat
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// The configuration form is being submitted and needs to be
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// processed.
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Vector<String> validationErrors = new Vector<String>();
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Vector<String> processingErrors = new Vector<String>();
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Vector<String> processingSuccess = new Vector<String>();
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try {
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// Validate that the options provided are legitimate. Note that
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// we've allowed them to persist their entries. As of this point
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// there is no other easy way to go back to the configure form
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// and preserve their entries.
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validationErrors.addAll(validateOptions(request));
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249
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String nodeName = (String)request.getParameter("dataone.nodeName");
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String nodeDescription = (String)request.getParameter("dataone.nodeDescription");
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String memberNodeId = (String)request.getParameter("dataone.nodeId");
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String nodeSynchronize = (String)request.getParameter("dataone.nodeSynchronize");
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String subject = (String)request.getParameter("dataone.subject");
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String contactSubject = (String)request.getParameter("dataone.contactSubject");
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String certpath = (String)request.getParameter("D1Client.certificate.file");
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// the synch schedule
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String year = (String) request.getParameter("dataone.nodeSynchronization.schedule.year");
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String mon = (String) request.getParameter("dataone.nodeSynchronization.schedule.mon");
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String mday = (String) request.getParameter("dataone.nodeSynchronization.schedule.mday");
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String wday = (String) request.getParameter("dataone.nodeSynchronization.schedule.wday");
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String hour = (String) request.getParameter("dataone.nodeSynchronization.schedule.hour");
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String min = (String) request.getParameter("dataone.nodeSynchronization.schedule.min");
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String sec = (String) request.getParameter("dataone.nodeSynchronization.schedule.sec");
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265
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266
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// the replication policies
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267
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String nodeReplicate = (String)request.getParameter("dataone.nodeReplicate");
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String numReplicas = (String)request.getParameter("dataone.replicationpolicy.default.numreplicas");
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String preferredNodeList = (String)request.getParameter("dataone.replicationpolicy.default.preferredNodeList");
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270
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String blockedNodeList = (String)request.getParameter("dataone.replicationpolicy.default.blockedNodeList");
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271
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272
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boolean synchronize = false;
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273
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if (nodeSynchronize != null) {
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274
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synchronize = Boolean.parseBoolean(nodeSynchronize);
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275
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}
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276
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boolean replicate = false;
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277
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if (nodeReplicate != null) {
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278
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replicate = Boolean.parseBoolean(nodeReplicate);
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279
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}
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280
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281
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// enable services as a whole?
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282
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boolean servicesEnabled = false;
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283
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String servicesEnabledString = (String) request.getParameter("dataone.mn.services.enabled");
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284
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if (servicesEnabledString != null) {
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285
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servicesEnabled = Boolean.parseBoolean(servicesEnabledString);
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286
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}
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287
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288
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// process the values, checking for nulls etc..
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289
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if (nodeName == null ) {
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290
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validationErrors.add("nodeName cannot be null");
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291
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} else {
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292
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293
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PropertyService.setPropertyNoPersist("dataone.nodeName", nodeName);
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294
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PropertyService.setPropertyNoPersist("dataone.nodeDescription", nodeDescription);
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295
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PropertyService.setPropertyNoPersist("dataone.nodeSynchronize", Boolean.toString(synchronize));
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296
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PropertyService.setPropertyNoPersist("dataone.subject", subject);
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297
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PropertyService.setPropertyNoPersist("dataone.contactSubject", contactSubject);
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298
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PropertyService.setPropertyNoPersist("D1Client.certificate.file", certpath);
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299
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300
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// the synch schedule
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301
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PropertyService.setPropertyNoPersist("dataone.nodeSynchronization.schedule.year", year);
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302
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PropertyService.setPropertyNoPersist("dataone.nodeSynchronization.schedule.mon", mon);
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303
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PropertyService.setPropertyNoPersist("dataone.nodeSynchronization.schedule.mday", mday);
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304
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PropertyService.setPropertyNoPersist("dataone.nodeSynchronization.schedule.wday", wday);
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305
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PropertyService.setPropertyNoPersist("dataone.nodeSynchronization.schedule.hour", hour);
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306
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PropertyService.setPropertyNoPersist("dataone.nodeSynchronization.schedule.min", min);
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307
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PropertyService.setPropertyNoPersist("dataone.nodeSynchronization.schedule.sec", sec);
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308
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309
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// the replication policies
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310
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PropertyService.setPropertyNoPersist("dataone.nodeReplicate", Boolean.toString(replicate));
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311
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PropertyService.setPropertyNoPersist("dataone.replicationpolicy.default.numreplicas", numReplicas);
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312
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PropertyService.setPropertyNoPersist("dataone.replicationpolicy.default.preferredNodeList", preferredNodeList);
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313
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PropertyService.setPropertyNoPersist("dataone.replicationpolicy.default.blockedNodeList", blockedNodeList);
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314
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315
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// services
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316
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PropertyService.setPropertyNoPersist("dataone.mn.services.enabled", Boolean.toString(servicesEnabled));
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317
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318
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// get the current node id so we know if we updated the value
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319
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String existingMemberNodeId = PropertyService.getProperty("dataone.nodeId");
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320
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321
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// update the property value
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322
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PropertyService.setPropertyNoPersist("dataone.nodeId", memberNodeId);
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323
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324
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// persist them all
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325
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PropertyService.persistProperties();
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326
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327
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// save a backup in case the form has errors, we reload from these
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328
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PropertyService.persistMainBackupProperties();
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329
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330
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// Register/update as a DataONE Member Node
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331
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registerDataONEMemberNode();
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|
332
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|
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333
|
// did we end up changing the member node id from what it used to be?
|
|
334
|
if (!existingMemberNodeId.equals(memberNodeId)) {
|
|
335
|
// update all existing system Metadata for this node id
|
|
336
|
IdentifierManager.getInstance().updateAuthoritativeMemberNodeId(existingMemberNodeId, memberNodeId);
|
|
337
|
}
|
|
338
|
|
|
339
|
// dataone system metadata generation
|
|
340
|
// NOTE: commented this out - we can generate this after the registration/configuration
|
|
341
|
// it will be more controlled and deliberate that way -BRL
|
|
342
|
// boolean smGenerated = Boolean.parseBoolean(PropertyService.getProperty("dataone.systemmetadata.generated"));
|
|
343
|
// if (!smGenerated) {
|
|
344
|
// GenerateSystemMetadata systemMetadataUpgrade = new GenerateSystemMetadata();
|
|
345
|
// systemMetadataUpgrade.upgrade();
|
|
346
|
// // NOTE: this runs in a thread and marks SM generated when thatthread completes
|
|
347
|
// }
|
|
348
|
//
|
|
349
|
// // Generate ORE, if we haven't
|
|
350
|
// boolean oreGenerated = Boolean.parseBoolean(PropertyService.getProperty("dataone.ore.generated"));
|
|
351
|
// if (!oreGenerated) {
|
|
352
|
// GenerateORE gore = new GenerateORE();
|
|
353
|
// gore.upgrade();
|
|
354
|
// PropertyService.setProperty("dataone.ore.generated", Boolean.TRUE.toString());
|
|
355
|
// }
|
|
356
|
|
|
357
|
// write the backup properties to a location outside the
|
|
358
|
// application directories so they will be available after
|
|
359
|
// the next upgrade
|
|
360
|
PropertyService.persistMainBackupProperties();
|
|
361
|
|
|
362
|
}
|
|
363
|
} catch (GeneralPropertyException gpe) {
|
|
364
|
String errorMessage = "D1Admin.configureDataONE - Problem getting or setting property while "
|
|
365
|
+ "processing system properties page: " + gpe.getMessage();
|
|
366
|
logMetacat.error(errorMessage);
|
|
367
|
processingErrors.add(errorMessage);
|
|
368
|
} catch (Exception e) {
|
|
369
|
String errorMessage = "D1Admin.configureDataONE error: " + e.getMessage();
|
|
370
|
logMetacat.error(errorMessage);
|
|
371
|
processingErrors.add(errorMessage);
|
|
372
|
}
|
|
373
|
|
|
374
|
try {
|
|
375
|
if (validationErrors.size() > 0 || processingErrors.size() > 0) {
|
|
376
|
RequestUtil.clearRequestMessages(request);
|
|
377
|
RequestUtil.setRequestFormErrors(request, validationErrors);
|
|
378
|
RequestUtil.setRequestErrors(request, processingErrors);
|
|
379
|
RequestUtil.forwardRequest(request, response, "/admin", null);
|
|
380
|
} else {
|
|
381
|
// Now that the options have been set, change the
|
|
382
|
// 'dataoneConfigured' option to 'true'
|
|
383
|
PropertyService.setProperty("configutil.dataoneConfigured",
|
|
384
|
PropertyService.CONFIGURED);
|
|
385
|
|
|
386
|
// Reload the main metacat configuration page
|
|
387
|
processingSuccess.add("DataONE successfully configured");
|
|
388
|
RequestUtil.clearRequestMessages(request);
|
|
389
|
RequestUtil.setRequestSuccess(request, processingSuccess);
|
|
390
|
RequestUtil.forwardRequest(request, response,
|
|
391
|
"/admin?configureType=configure&processForm=false", null);
|
|
392
|
}
|
|
393
|
} catch (MetacatUtilException mue) {
|
|
394
|
throw new AdminException("D1Admin.configureDataONE - utility problem while processing dataone configuration: "
|
|
395
|
+ mue.getMessage());
|
|
396
|
} catch (GeneralPropertyException gpe) {
|
|
397
|
throw new AdminException("D1Admin.configureDataONE - problem with properties while "
|
|
398
|
+ "processing geoservices configuration page: " + gpe.getMessage());
|
|
399
|
}
|
|
400
|
}
|
|
401
|
}
|
|
402
|
|
|
403
|
private boolean isNodeRegistered(String nodeId) {
|
|
404
|
// check if this is new or an update
|
|
405
|
boolean exists = false;
|
|
406
|
try {
|
|
407
|
NodeList nodes = D1Client.getCN().listNodes();
|
|
408
|
for (Node n: nodes.getNodeList()) {
|
|
409
|
if (n.getIdentifier().getValue().equals(nodeId)) {
|
|
410
|
exists = true;
|
|
411
|
break;
|
|
412
|
}
|
|
413
|
}
|
|
414
|
} catch (BaseException e) {
|
|
415
|
logMetacat.error("Could not check for node with DataONE (" + e.getCode() + "/" + e.getDetail_code() + "): " + e.getDescription());
|
|
416
|
}
|
|
417
|
return exists;
|
|
418
|
}
|
|
419
|
|
|
420
|
/**
|
|
421
|
* Register as a member node on the DataONE network. The node description is
|
|
422
|
* retrieved from the getCapabilities() service, and so this should only be called
|
|
423
|
* after the properties have been properly set up in Metacat.
|
|
424
|
*/
|
|
425
|
private void registerDataONEMemberNode() throws BaseException, PropertyNotFoundException, GeneralPropertyException {
|
|
426
|
|
|
427
|
logMetacat.debug("Get the Node description.");
|
|
428
|
Node node = MNodeService.getInstance(null).getCapabilities();
|
|
429
|
logMetacat.debug("Setting client certificate location.");
|
|
430
|
String mnCertificatePath = PropertyService.getProperty("D1Client.certificate.file");
|
|
431
|
CertificateManager.getInstance().setCertificateLocation(mnCertificatePath);
|
|
432
|
CNode cn = D1Client.getCN();
|
|
433
|
|
|
434
|
// check if this is new or an update
|
|
435
|
boolean update = isNodeRegistered(node.getIdentifier().getValue());
|
|
436
|
|
|
437
|
// Session is null, because the libclient code automatically sets up an
|
|
438
|
// SSL session for us using the client certificate provided
|
|
439
|
Session session = null;
|
|
440
|
if (update) {
|
|
441
|
logMetacat.debug("Updating node with DataONE. " + cn.getNodeBaseServiceUrl());
|
|
442
|
boolean result = cn.updateNodeCapabilities(session, node.getIdentifier(), node);
|
|
443
|
} else {
|
|
444
|
logMetacat.debug("Registering node with DataONE. " + cn.getNodeBaseServiceUrl());
|
|
445
|
NodeReference mnodeRef = cn.register(session, node);
|
|
446
|
|
|
447
|
// save that we submitted registration
|
|
448
|
PropertyService.setPropertyNoPersist("dataone.mn.registration.submitted", Boolean.TRUE.toString());
|
|
449
|
|
|
450
|
// persist the properties
|
|
451
|
PropertyService.persistProperties();
|
|
452
|
}
|
|
453
|
|
|
454
|
}
|
|
455
|
|
|
456
|
/**
|
|
457
|
* Validate the most important configuration options submitted by the user.
|
|
458
|
*
|
|
459
|
* @return a vector holding error message for any fields that fail
|
|
460
|
* validation.
|
|
461
|
*/
|
|
462
|
protected Vector<String> validateOptions(HttpServletRequest request) {
|
|
463
|
Vector<String> errorVector = new Vector<String>();
|
|
464
|
|
|
465
|
// TODO MCD validate options.
|
|
466
|
|
|
467
|
return errorVector;
|
|
468
|
}
|
|
469
|
}
|