1 |
7510
|
leinfelder
|
/**
|
2 |
|
|
* '$RCSfile$'
|
3 |
|
|
* Copyright: 2010 Regents of the University of California and the
|
4 |
|
|
* National Center for Ecological Analysis and Synthesis
|
5 |
|
|
* Purpose: To test the Access Controls in metacat by JUnit
|
6 |
|
|
*
|
7 |
|
|
* '$Author$'
|
8 |
|
|
* '$Date$'
|
9 |
|
|
* '$Revision$'
|
10 |
|
|
*
|
11 |
|
|
* This program is free software; you can redistribute it and/or modify
|
12 |
|
|
* it under the terms of the GNU General Public License as published by
|
13 |
|
|
* the Free Software Foundation; either version 2 of the License, or
|
14 |
|
|
* (at your option) any later version.
|
15 |
|
|
*
|
16 |
|
|
* This program is distributed in the hope that it will be useful,
|
17 |
|
|
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
18 |
|
|
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
19 |
|
|
* GNU General Public License for more details.
|
20 |
|
|
*
|
21 |
|
|
* You should have received a copy of the GNU General Public License
|
22 |
|
|
* along with this program; if not, write to the Free Software
|
23 |
|
|
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
24 |
|
|
*/
|
25 |
|
|
|
26 |
|
|
package edu.ucsb.nceas.metacat.dataone;
|
27 |
|
|
|
28 |
|
|
|
29 |
|
|
import java.io.ByteArrayInputStream;
|
30 |
7516
|
leinfelder
|
import java.io.FileInputStream;
|
31 |
|
|
import java.io.FileNotFoundException;
|
32 |
8311
|
tao
|
import java.io.IOException;
|
33 |
7510
|
leinfelder
|
import java.io.InputStream;
|
34 |
|
|
import java.util.HashMap;
|
35 |
|
|
|
36 |
|
|
import junit.framework.Test;
|
37 |
|
|
import junit.framework.TestSuite;
|
38 |
|
|
|
39 |
8304
|
jones
|
import org.apache.commons.io.IOUtils;
|
40 |
8810
|
leinfelder
|
import org.dataone.client.v2.formats.ObjectFormatCache;
|
41 |
7510
|
leinfelder
|
import org.dataone.configuration.Settings;
|
42 |
|
|
import org.dataone.service.types.v1.Identifier;
|
43 |
|
|
import org.dataone.service.types.v1.Session;
|
44 |
7516
|
leinfelder
|
import org.dataone.service.types.v1.Subject;
|
45 |
8810
|
leinfelder
|
import org.dataone.service.types.v2.SystemMetadata;
|
46 |
7510
|
leinfelder
|
import org.junit.After;
|
47 |
|
|
import org.junit.Before;
|
48 |
|
|
|
49 |
|
|
import edu.ucsb.nceas.ezid.EZIDService;
|
50 |
|
|
import edu.ucsb.nceas.ezid.profile.DataCiteProfile;
|
51 |
8204
|
leinfelder
|
import edu.ucsb.nceas.ezid.profile.InternalProfile;
|
52 |
7510
|
leinfelder
|
import edu.ucsb.nceas.metacat.properties.PropertyService;
|
53 |
|
|
|
54 |
|
|
/**
|
55 |
|
|
* A JUnit test to exercise the DOI registration for content added
|
56 |
|
|
* via the DataONE MN API
|
57 |
|
|
*
|
58 |
|
|
* @author leinfelder
|
59 |
|
|
*
|
60 |
|
|
*/
|
61 |
|
|
public class RegisterDOITest extends D1NodeServiceTest {
|
62 |
|
|
|
63 |
7516
|
leinfelder
|
|
64 |
|
|
|
65 |
|
|
/**
|
66 |
|
|
* Set up the test fixtures
|
67 |
|
|
*
|
68 |
|
|
* @throws Exception
|
69 |
|
|
*/
|
70 |
|
|
@Before
|
71 |
|
|
public void setUp() throws Exception {
|
72 |
|
|
super.setUp();
|
73 |
|
|
// set up the configuration for d1client
|
74 |
|
|
Settings.getConfiguration().setProperty("D1Client.cnClassName",
|
75 |
|
|
MockCNode.class.getName());
|
76 |
|
|
}
|
77 |
7510
|
leinfelder
|
|
78 |
7516
|
leinfelder
|
/**
|
79 |
|
|
* Remove the test fixtures
|
80 |
|
|
*/
|
81 |
|
|
@After
|
82 |
|
|
public void tearDown() {
|
83 |
|
|
}
|
84 |
7510
|
leinfelder
|
|
85 |
7516
|
leinfelder
|
/**
|
86 |
|
|
* Build the test suite
|
87 |
|
|
*
|
88 |
|
|
* @return
|
89 |
|
|
*/
|
90 |
|
|
public static Test suite() {
|
91 |
7510
|
leinfelder
|
|
92 |
7516
|
leinfelder
|
TestSuite suite = new TestSuite();
|
93 |
|
|
suite.addTest(new RegisterDOITest("initialize"));
|
94 |
|
|
|
95 |
|
|
// DOI registration test
|
96 |
|
|
suite.addTest(new RegisterDOITest("testCreateDOI"));
|
97 |
|
|
suite.addTest(new RegisterDOITest("testMintAndCreateDOI"));
|
98 |
|
|
suite.addTest(new RegisterDOITest("testMintAndCreateForEML"));
|
99 |
7849
|
leinfelder
|
|
100 |
|
|
// publish
|
101 |
|
|
suite.addTest(new RegisterDOITest("testPublishDOI"));
|
102 |
7516
|
leinfelder
|
|
103 |
|
|
return suite;
|
104 |
|
|
|
105 |
|
|
}
|
106 |
|
|
|
107 |
|
|
/**
|
108 |
|
|
* Constructor for the tests
|
109 |
|
|
*
|
110 |
|
|
* @param name
|
111 |
|
|
* - the name of the test
|
112 |
|
|
*/
|
113 |
|
|
public RegisterDOITest(String name) {
|
114 |
|
|
super(name);
|
115 |
|
|
|
116 |
|
|
}
|
117 |
|
|
|
118 |
|
|
/**
|
119 |
|
|
* Initial blank test
|
120 |
|
|
*/
|
121 |
|
|
public void initialize() {
|
122 |
|
|
assertTrue(1 == 1);
|
123 |
|
|
|
124 |
|
|
}
|
125 |
|
|
|
126 |
|
|
/**
|
127 |
|
|
* constructs a "fake" session with a test subject
|
128 |
|
|
* @return
|
129 |
|
|
*/
|
130 |
|
|
@Override
|
131 |
|
|
public Session getTestSession() throws Exception {
|
132 |
|
|
Session session = new Session();
|
133 |
|
|
Subject subject = new Subject();
|
134 |
|
|
subject.setValue("CN=Benjamin Leinfelder A515,O=University of Chicago,C=US,DC=cilogon,DC=org");
|
135 |
|
|
session.setSubject(subject);
|
136 |
|
|
return session;
|
137 |
|
|
}
|
138 |
7510
|
leinfelder
|
|
139 |
7516
|
leinfelder
|
public void testMintAndCreateDOI() {
|
140 |
|
|
printTestHeader("testMintAndCreateDOI");
|
141 |
|
|
testMintAndCreateDOI(null);
|
142 |
|
|
}
|
143 |
|
|
|
144 |
|
|
public void testMintAndCreateForEML() {
|
145 |
|
|
printTestHeader("testMintAndCreateForEML");
|
146 |
|
|
String emlFile = "test/tao.14563.1.xml";
|
147 |
|
|
InputStream content = null;
|
148 |
|
|
try {
|
149 |
8304
|
jones
|
content = new FileInputStream(emlFile);
|
150 |
|
|
testMintAndCreateDOI(content);
|
151 |
|
|
content.close();
|
152 |
7516
|
leinfelder
|
} catch (FileNotFoundException e) {
|
153 |
|
|
e.printStackTrace();
|
154 |
|
|
fail(e.getMessage());
|
155 |
8311
|
tao
|
} catch (IOException e) {
|
156 |
|
|
e.printStackTrace();
|
157 |
|
|
fail(e.getMessage());
|
158 |
|
|
} finally {
|
159 |
8304
|
jones
|
IOUtils.closeQuietly(content);
|
160 |
7516
|
leinfelder
|
}
|
161 |
|
|
}
|
162 |
|
|
|
163 |
|
|
/**
|
164 |
7510
|
leinfelder
|
* Test object creation
|
165 |
|
|
*/
|
166 |
7516
|
leinfelder
|
private void testMintAndCreateDOI(InputStream inputStream) {
|
167 |
|
|
printTestHeader("testMintAndCreateDOI - common");
|
168 |
7510
|
leinfelder
|
|
169 |
|
|
try {
|
170 |
|
|
// get ezid config properties
|
171 |
|
|
String ezidUsername = PropertyService.getProperty("guid.ezid.username");
|
172 |
|
|
String ezidPassword = PropertyService.getProperty("guid.ezid.password");
|
173 |
|
|
String ezidServiceBaseUrl = PropertyService.getProperty("guid.ezid.baseurl");
|
174 |
|
|
|
175 |
|
|
EZIDService ezid = new EZIDService(ezidServiceBaseUrl);
|
176 |
|
|
ezid.login(ezidUsername, ezidPassword);
|
177 |
|
|
|
178 |
|
|
// Mint a DOI
|
179 |
|
|
Session session = getTestSession();
|
180 |
|
|
Identifier guid = MNodeService.getInstance(request).generateIdentifier(session, "DOI", null);
|
181 |
|
|
|
182 |
|
|
// check that EZID knows about it
|
183 |
8795
|
leinfelder
|
HashMap<String, String> metadata = null;
|
184 |
|
|
int count = 0;
|
185 |
|
|
do {
|
186 |
|
|
try {
|
187 |
|
|
metadata = ezid.getMetadata(guid.getValue());
|
188 |
|
|
} catch (Exception e) {
|
189 |
|
|
Thread.sleep(1000);
|
190 |
|
|
}
|
191 |
|
|
count++;
|
192 |
|
|
} while (metadata == null && count < 10);
|
193 |
7510
|
leinfelder
|
assertNotNull(metadata);
|
194 |
|
|
|
195 |
|
|
// add the actual object for the newly-minted DOI
|
196 |
7516
|
leinfelder
|
SystemMetadata sysmeta = null;
|
197 |
|
|
InputStream object = null;
|
198 |
8204
|
leinfelder
|
boolean isMetadata = false;
|
199 |
7516
|
leinfelder
|
if (inputStream != null) {
|
200 |
|
|
sysmeta = createSystemMetadata(guid, session.getSubject(), null);
|
201 |
|
|
object = inputStream;
|
202 |
|
|
sysmeta.setFormatId(ObjectFormatCache.getInstance().getFormat("eml://ecoinformatics.org/eml-2.1.0").getFormatId());
|
203 |
8204
|
leinfelder
|
isMetadata = true;
|
204 |
7516
|
leinfelder
|
} else {
|
205 |
|
|
object = new ByteArrayInputStream("test".getBytes("UTF-8"));
|
206 |
|
|
sysmeta = createSystemMetadata(guid, session.getSubject(), object);
|
207 |
|
|
}
|
208 |
|
|
|
209 |
7510
|
leinfelder
|
Identifier pid = MNodeService.getInstance(request).create(session, guid, object, sysmeta);
|
210 |
|
|
assertEquals(guid.getValue(), pid.getValue());
|
211 |
|
|
|
212 |
|
|
// check for the metadata for title element
|
213 |
8795
|
leinfelder
|
count = 0;
|
214 |
|
|
metadata = null;
|
215 |
|
|
do {
|
216 |
|
|
try {
|
217 |
|
|
metadata = ezid.getMetadata(pid.getValue());
|
218 |
|
|
// check if the update thread finished yet, otherwise try again
|
219 |
|
|
if (metadata != null && isMetadata) {
|
220 |
|
|
String registeredTarget = metadata.get(InternalProfile.TARGET.toString());
|
221 |
|
|
if (!registeredTarget.endsWith("/#view/" + pid.getValue())) {
|
222 |
|
|
// try fetching it again
|
223 |
|
|
metadata = null;
|
224 |
|
|
}
|
225 |
|
|
}
|
226 |
|
|
} catch (Exception e) {
|
227 |
|
|
Thread.sleep(1000);
|
228 |
|
|
}
|
229 |
|
|
count++;
|
230 |
|
|
} while (metadata == null && count < 10);
|
231 |
7510
|
leinfelder
|
assertNotNull(metadata);
|
232 |
|
|
assertTrue(metadata.containsKey(DataCiteProfile.TITLE.toString()));
|
233 |
|
|
|
234 |
8204
|
leinfelder
|
// check that the target URI was updated
|
235 |
|
|
if (isMetadata) {
|
236 |
|
|
String registeredTarget = metadata.get(InternalProfile.TARGET.toString());
|
237 |
|
|
assertTrue(registeredTarget.endsWith("/#view/" + pid.getValue()));
|
238 |
|
|
}
|
239 |
|
|
|
240 |
7516
|
leinfelder
|
System.out.println("tested with DOI: " + pid.getValue());
|
241 |
|
|
|
242 |
7510
|
leinfelder
|
} catch (Exception e) {
|
243 |
|
|
e.printStackTrace();
|
244 |
|
|
fail("Unexpected error: " + e.getMessage());
|
245 |
|
|
}
|
246 |
|
|
}
|
247 |
|
|
|
248 |
|
|
/**
|
249 |
|
|
* Test object creation
|
250 |
|
|
*/
|
251 |
|
|
public void testCreateDOI() {
|
252 |
|
|
printTestHeader("testCreateDOI");
|
253 |
|
|
|
254 |
|
|
try {
|
255 |
|
|
// get ezid config properties
|
256 |
|
|
String shoulder = PropertyService.getProperty("guid.ezid.doishoulder.1");
|
257 |
|
|
String ezidUsername = PropertyService.getProperty("guid.ezid.username");
|
258 |
|
|
String ezidPassword = PropertyService.getProperty("guid.ezid.password");
|
259 |
|
|
String ezidServiceBaseUrl = PropertyService.getProperty("guid.ezid.baseurl");
|
260 |
|
|
|
261 |
|
|
Session session = getTestSession();
|
262 |
|
|
Identifier guid = new Identifier();
|
263 |
|
|
guid.setValue(shoulder + "/testCreateDOI." + System.currentTimeMillis());
|
264 |
|
|
InputStream object = new ByteArrayInputStream( "test".getBytes("UTF-8"));
|
265 |
|
|
SystemMetadata sysmeta = createSystemMetadata(guid, session.getSubject(), object);
|
266 |
|
|
Identifier pid = MNodeService.getInstance(request).create(session, guid, object, sysmeta);
|
267 |
|
|
assertEquals(guid.getValue(), pid.getValue());
|
268 |
|
|
|
269 |
|
|
// check for the metadata explicitly, using ezid service
|
270 |
|
|
EZIDService ezid = new EZIDService(ezidServiceBaseUrl);
|
271 |
|
|
ezid.login(ezidUsername, ezidPassword);
|
272 |
8795
|
leinfelder
|
int count = 0;
|
273 |
|
|
HashMap<String, String> metadata = null;
|
274 |
|
|
do {
|
275 |
|
|
try {
|
276 |
|
|
metadata = ezid.getMetadata(pid.getValue());
|
277 |
|
|
} catch (Exception e) {
|
278 |
|
|
Thread.sleep(1000);
|
279 |
|
|
}
|
280 |
|
|
count++;
|
281 |
|
|
} while (metadata == null && count < 10);
|
282 |
|
|
|
283 |
7510
|
leinfelder
|
assertNotNull(metadata);
|
284 |
|
|
assertTrue(metadata.containsKey(DataCiteProfile.TITLE.toString()));
|
285 |
|
|
|
286 |
|
|
} catch (Exception e) {
|
287 |
|
|
e.printStackTrace();
|
288 |
|
|
fail("Unexpected error: " + e.getMessage());
|
289 |
|
|
}
|
290 |
|
|
}
|
291 |
7849
|
leinfelder
|
|
292 |
|
|
/**
|
293 |
|
|
* Test object publishing
|
294 |
|
|
*/
|
295 |
|
|
public void testPublishDOI() {
|
296 |
|
|
printTestHeader("testPublishDOI");
|
297 |
|
|
|
298 |
|
|
try {
|
299 |
|
|
// get ezid config properties
|
300 |
|
|
String ezidUsername = PropertyService.getProperty("guid.ezid.username");
|
301 |
|
|
String ezidPassword = PropertyService.getProperty("guid.ezid.password");
|
302 |
|
|
String ezidServiceBaseUrl = PropertyService.getProperty("guid.ezid.baseurl");
|
303 |
|
|
|
304 |
|
|
Session session = getTestSession();
|
305 |
|
|
Identifier guid = new Identifier();
|
306 |
|
|
guid.setValue("testPublishDOI." + System.currentTimeMillis());
|
307 |
|
|
|
308 |
|
|
// use EML to test
|
309 |
|
|
// TODO: include an ORE to really exercise it
|
310 |
|
|
String emlFile = "test/tao.14563.1.xml";
|
311 |
|
|
InputStream content = null;
|
312 |
|
|
try {
|
313 |
|
|
content = new FileInputStream(emlFile);
|
314 |
8304
|
jones
|
|
315 |
|
|
// create the initial version without DOI
|
316 |
|
|
SystemMetadata sysmeta = createSystemMetadata(guid, session.getSubject(), null);
|
317 |
|
|
sysmeta.setFormatId(ObjectFormatCache.getInstance().getFormat("eml://ecoinformatics.org/eml-2.1.0").getFormatId());
|
318 |
|
|
Identifier pid = MNodeService.getInstance(request).create(session, guid, content, sysmeta);
|
319 |
|
|
assertEquals(guid.getValue(), pid.getValue());
|
320 |
|
|
|
321 |
|
|
// now publish it
|
322 |
|
|
Identifier publishedIdentifier = MNodeService.getInstance(request).publish(session, pid);
|
323 |
|
|
|
324 |
|
|
// check for the metadata explicitly, using ezid service
|
325 |
|
|
EZIDService ezid = new EZIDService(ezidServiceBaseUrl);
|
326 |
|
|
ezid.login(ezidUsername, ezidPassword);
|
327 |
8795
|
leinfelder
|
int count = 0;
|
328 |
|
|
HashMap<String, String> metadata = null;
|
329 |
|
|
do {
|
330 |
|
|
try {
|
331 |
|
|
metadata = ezid.getMetadata(publishedIdentifier.getValue());
|
332 |
|
|
} catch (Exception e) {
|
333 |
|
|
Thread.sleep(1000);
|
334 |
|
|
}
|
335 |
|
|
count++;
|
336 |
|
|
} while (metadata == null && count < 10);
|
337 |
|
|
|
338 |
8304
|
jones
|
assertNotNull(metadata);
|
339 |
|
|
assertTrue(metadata.containsKey(DataCiteProfile.TITLE.toString()));
|
340 |
|
|
content.close();
|
341 |
7849
|
leinfelder
|
} catch (FileNotFoundException e) {
|
342 |
|
|
e.printStackTrace();
|
343 |
|
|
fail(e.getMessage());
|
344 |
8304
|
jones
|
} finally {
|
345 |
|
|
IOUtils.closeQuietly(content);
|
346 |
7849
|
leinfelder
|
}
|
347 |
|
|
|
348 |
|
|
|
349 |
|
|
} catch (Exception e) {
|
350 |
|
|
e.printStackTrace();
|
351 |
|
|
fail("Unexpected error: " + e.getMessage());
|
352 |
|
|
}
|
353 |
|
|
}
|
354 |
7510
|
leinfelder
|
}
|