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/**
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 *  Copyright: 2013 Regents of the University of California and the
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 *             National Center for Ecological Analysis and Synthesis
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 *
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 * This program is free software; you can redistribute it and/or modify
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 * it under the terms of the GNU General Public License as published by
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 * the Free Software Foundation; either version 2 of the License, or
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 * (at your option) any later version.
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 *
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 * This program is distributed in the hope that it will be useful,
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 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 * GNU General Public License for more details.
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 *
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
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 */
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package edu.ucsb.nceas.metacat.index;
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import java.io.ByteArrayInputStream;
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import java.io.FileInputStream;
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import java.io.FileNotFoundException;
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import java.io.IOException;
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import java.io.InputStream;
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import java.net.MalformedURLException;
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import java.util.ArrayList;
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import java.util.Calendar;
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import java.util.Collection;
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import java.util.Date;
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import java.util.HashMap;
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import java.util.Iterator;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import javax.xml.parsers.DocumentBuilder;
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import javax.xml.parsers.DocumentBuilderFactory;
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import javax.xml.parsers.ParserConfigurationException;
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import javax.xml.xpath.XPath;
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import javax.xml.xpath.XPathExpressionException;
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import javax.xml.xpath.XPathFactory;
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import org.apache.commons.codec.EncoderException;
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import org.apache.commons.collections.CollectionUtils;
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import org.apache.commons.io.output.ByteArrayOutputStream;
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import org.apache.commons.lang.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.apache.solr.client.solrj.SolrQuery;
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import org.apache.solr.client.solrj.SolrServer;
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import org.apache.solr.client.solrj.SolrServerException;
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import org.apache.solr.client.solrj.response.QueryResponse;
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import org.apache.solr.client.solrj.response.UpdateResponse;
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import org.apache.solr.common.SolrDocument;
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import org.apache.solr.common.SolrDocumentList;
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import org.apache.solr.common.SolrInputDocument;
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import org.apache.solr.schema.IndexSchema;
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import org.dataone.cn.indexer.XMLNamespaceConfig;
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import org.dataone.cn.indexer.convert.SolrDateConverter;
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import org.dataone.cn.indexer.parser.BaseXPathDocumentSubprocessor;
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import org.dataone.cn.indexer.parser.IDocumentDeleteSubprocessor;
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import org.dataone.cn.indexer.parser.IDocumentSubprocessor;
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import org.dataone.cn.indexer.parser.SolrField;
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import org.dataone.cn.indexer.solrhttp.SolrDoc;
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import org.dataone.cn.indexer.solrhttp.SolrElementField;
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import org.dataone.exceptions.MarshallingException;
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import org.dataone.service.exceptions.NotFound;
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import org.dataone.service.exceptions.NotImplemented;
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import org.dataone.service.exceptions.ServiceFailure;
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import org.dataone.service.exceptions.UnsupportedType;
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import org.dataone.service.types.v1.Event;
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import org.dataone.service.types.v1.Identifier;
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import org.dataone.service.types.v2.SystemMetadata;
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import org.dataone.service.util.DateTimeMarshaller;
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import org.dataone.service.util.TypeMarshaller;
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import org.dspace.foresite.OREParserException;
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import org.w3c.dom.Document;
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import org.xml.sax.SAXException;
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import edu.ucsb.nceas.metacat.common.index.event.IndexEvent;
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import edu.ucsb.nceas.metacat.common.query.SolrQueryServiceController;
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import edu.ucsb.nceas.metacat.index.event.EventlogFactory;
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import edu.ucsb.nceas.metacat.index.resourcemap.ResourceMapSubprocessor;
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/**
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 * A class does insert, update and remove indexes to a SOLR server
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 * @author tao
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 *
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 */
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public class SolrIndex {
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    public static final String ID = "id";
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    private static final String IDQUERY = ID+":*";
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    private List<IDocumentSubprocessor> subprocessors = null;
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    private List<IDocumentDeleteSubprocessor> deleteSubprocessors = null;
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    private SolrServer solrServer = null;
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    private XMLNamespaceConfig xmlNamespaceConfig = null;
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    private List<SolrField> sysmetaSolrFields = null;
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    private static DocumentBuilderFactory documentBuilderFactory = null;
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    private static DocumentBuilder builder = null;
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    private static XPathFactory xpathFactory = null;
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    private static XPath xpath = null;
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    Log log = LogFactory.getLog(SolrIndex.class);
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    static {
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        documentBuilderFactory = DocumentBuilderFactory.newInstance();
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        documentBuilderFactory.setNamespaceAware(true);
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        try {
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            builder = documentBuilderFactory.newDocumentBuilder();
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        } catch (ParserConfigurationException e) {
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            e.printStackTrace();
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        }
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        xpathFactory = XPathFactory.newInstance();
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        xpath = xpathFactory.newXPath();
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    }
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    /**
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     * Constructor
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     * @throws SAXException 
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     * @throws IOException 
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     */
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    public SolrIndex(XMLNamespaceConfig xmlNamespaceConfig, List<SolrField> sysmetaSolrFields)
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                    throws XPathExpressionException, ParserConfigurationException, IOException, SAXException {
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         this.xmlNamespaceConfig = xmlNamespaceConfig;
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         this.sysmetaSolrFields = sysmetaSolrFields;
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         init();
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    }
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    private void init() throws ParserConfigurationException, XPathExpressionException {
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        xpath.setNamespaceContext(xmlNamespaceConfig);
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        initExpressions();
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    }
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    private void initExpressions() throws XPathExpressionException {
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        for (SolrField field : sysmetaSolrFields) {
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            field.initExpression(xpath);
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        }
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    }
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    /**
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     * Get the list of the Subprocessors in this index.
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     * @return the list of the Subprocessors.
149
     */
150
    public List<IDocumentSubprocessor> getSubprocessors() {
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        return subprocessors;
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    }
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    /**
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     * Set the list of Subprocessors.
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     * @param subprocessorList  the list will be set.
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     */
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    public void setSubprocessors(List<IDocumentSubprocessor> subprocessorList) {
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        for (IDocumentSubprocessor subprocessor : subprocessorList) {
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        	if (subprocessor instanceof BaseXPathDocumentSubprocessor) {
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        		((BaseXPathDocumentSubprocessor)subprocessor).initExpression(xpath);
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        	}
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        }
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        this.subprocessors = subprocessorList;
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    }
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    public List<IDocumentDeleteSubprocessor> getDeleteSubprocessors() {
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		return deleteSubprocessors;
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	}
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	public void setDeleteSubprocessors(
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			List<IDocumentDeleteSubprocessor> deleteSubprocessors) {
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		this.deleteSubprocessors = deleteSubprocessors;
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	}
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	/**
177
     * Generate the index for the given information
178
     * @param id
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     * @param systemMetadata
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     * @param dataStream
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     * @return
182
     * @throws IOException
183
     * @throws SAXException
184
     * @throws ParserConfigurationException
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     * @throws XPathExpressionException
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     * @throws MarshallingException 
187
     * @throws SolrServerException 
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     * @throws EncoderException
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     * @throws UnsupportedType 
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     * @throws NotFound 
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     * @throws NotImplemented 
192
     */
193
    private Map<String, SolrDoc> process(String id, SystemMetadata systemMetadata, String objectPath)
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                    throws IOException, SAXException, ParserConfigurationException,
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                    XPathExpressionException, MarshallingException, EncoderException, SolrServerException, NotImplemented, NotFound, UnsupportedType{
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        // Load the System Metadata document
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        ByteArrayOutputStream systemMetadataOutputStream = new ByteArrayOutputStream();
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        TypeMarshaller.marshalTypeToOutputStream(systemMetadata, systemMetadataOutputStream);
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        ByteArrayInputStream systemMetadataStream = new ByteArrayInputStream(systemMetadataOutputStream.toByteArray());
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        Document sysMetaDoc = generateXmlDocument(systemMetadataStream);
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        if (sysMetaDoc == null) {
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            log.error("Could not load System metadata for ID: " + id);
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            return null;
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        }
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        // Extract the field values from the System Metadata
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        List<SolrElementField> sysSolrFields = processSysmetaFields(sysMetaDoc, id);
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        SolrDoc indexDocument = new SolrDoc(sysSolrFields);
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        Map<String, SolrDoc> docs = new HashMap<String, SolrDoc>();
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        docs.put(id, indexDocument);
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        // get the format id for this object
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        String formatId = indexDocument.getFirstFieldValue(SolrElementField.FIELD_OBJECTFORMAT);
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        // Determine if subprocessors are available for this ID
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        if (subprocessors != null) {
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	        // for each subprocessor loaded from the spring config
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	        for (IDocumentSubprocessor subprocessor : subprocessors) {
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	            // Does this subprocessor apply?
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	            if (subprocessor.canProcess(formatId)) {
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	                // if so, then extract the additional information from the
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	                // document.
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	                try {
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	                    // docObject = the resource map document or science
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	                    // metadata document.
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	                    // note that resource map processing touches all objects
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	                    // referenced by the resource map.
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	                	FileInputStream dataStream = new FileInputStream(objectPath);
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	                    if (!dataStream.getFD().valid()) {
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	                    	log.error("Could not load OBJECT file for ID,Path=" + id + ", "
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                                    + objectPath);
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	                        //throw new Exception("Could not load OBJECT for ID " + id );
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	                    } else {
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	                        docs = subprocessor.processDocument(id, docs, dataStream);
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	                    }
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	                } catch (Exception e) {
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	                    e.printStackTrace();
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	                    log.error(e.getMessage(), e);
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	                    throw new SolrServerException(e.getMessage());
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	                }
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	            }
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	        }
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       }
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       // TODO: in the XPathDocumentParser class in d1_cn_index_process module,
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       // merge is only for resource map. We need more work here.
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       for (SolrDoc mergeDoc : docs.values()) {
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           if (!mergeDoc.isMerged()) {
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                 mergeWithIndexedDocument(mergeDoc);
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           }
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       }
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       //SolrElementAdd addCommand = getAddCommand(new ArrayList<SolrDoc>(docs.values()));
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       return docs;
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    }
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    /**
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     * Merge updates with existing solr documents
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     * 
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     * This method appears to re-set the data package field data into the
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     * document about to be updated in the solr index. Since packaging
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     * information is derived from the package document (resource map), this
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     * information is not present when processing a document contained in a data
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     * package. This method replaces those values from the existing solr index
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     * record for the document being processed. -- sroseboo, 1-18-12
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     * 
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     * @param indexDocument
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     * @return
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     * @throws IOException
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     * @throws EncoderException
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     * @throws XPathExpressionException
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     * @throws SAXException 
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     * @throws ParserConfigurationException 
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     * @throws SolrServerException 
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     * @throws UnsupportedType 
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     * @throws NotFound 
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     * @throws NotImplemented 
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     */
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    // TODO:combine merge function with resourcemap merge function
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    private SolrDoc mergeWithIndexedDocument(SolrDoc indexDocument) throws IOException,
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            EncoderException, XPathExpressionException, SolrServerException, ParserConfigurationException, SAXException, NotImplemented, NotFound, UnsupportedType {
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        List<String> ids = new ArrayList<String>();
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        ids.add(indexDocument.getIdentifier());
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        List<SolrDoc> indexedDocuments = ResourceMapSubprocessor.getSolrDocs(ids);
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        SolrDoc indexedDocument = indexedDocuments == null || indexedDocuments.size() <= 0 ? null
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                : indexedDocuments.get(0);
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        IndexSchema indexSchema = SolrQueryServiceController.getInstance().getSchema();
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293
        if (indexedDocument == null || indexedDocument.getFieldList().size() <= 0) {
294
            return indexDocument;
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        } else {
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            for (SolrElementField field : indexedDocument.getFieldList()) {
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                if ((field.getName().equals(SolrElementField.FIELD_ISDOCUMENTEDBY)
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                        || field.getName().equals(SolrElementField.FIELD_DOCUMENTS) || field
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                        .getName().equals(SolrElementField.FIELD_RESOURCEMAP))
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                        && !indexDocument.hasFieldWithValue(field.getName(), field.getValue())) {
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                    indexDocument.addField(field);
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                } else if (!indexSchema.isCopyFieldTarget(indexSchema.getField(field.getName())) && !indexDocument.hasField(field.getName())) {
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                    indexDocument.addField(field);
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                }
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            }
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307
            indexDocument.setMerged(true);
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            return indexDocument;
309
        }
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    }
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    /*
313
     * Generate a Document from the InputStream
314
     */
315
    private Document generateXmlDocument(InputStream smdStream) throws SAXException {
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        Document doc = null;
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318
        try {
319
            doc = builder.parse(smdStream);
320
        } catch (IOException e) {
321
            log.error(e.getMessage(), e);
322
        }
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324
        return doc;
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    }
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327
    /*
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     * Index the fields of the system metadata
329
     */
330
    private List<SolrElementField> processSysmetaFields(Document doc, String identifier) {
331

    
332
        List<SolrElementField> fieldList = new ArrayList<SolrElementField>();
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        // solrFields is the list of fields defined in the application context
334
       
335
        for (SolrField field : sysmetaSolrFields) {
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            try {
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                // the field.getFields method can return a single value or
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                // multiple values for multi-valued fields
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                // or can return multiple SOLR document fields.
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                fieldList.addAll(field.getFields(doc, identifier));
341
            } catch (Exception e) {
342
                e.printStackTrace();
343
            }
344
        }
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        return fieldList;
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347
    }
348
    
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    /**
350
     * Check the parameters of the insert or update methods.
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     * @param pid
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     * @param systemMetadata
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     * @param data
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     * @throws SolrServerException
355
     */
356
    private void checkParams(Identifier pid, SystemMetadata systemMetadata, String objectPath) throws SolrServerException {
357
        if(pid == null || pid.getValue() == null || pid.getValue().trim().equals("")) {
358
            throw new SolrServerException("The identifier of the indexed document should not be null or blank.");
359
        }
360
        if(systemMetadata == null) {
361
            throw new SolrServerException("The system metadata of the indexed document "+pid.getValue()+ " should not be null.");
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        }
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        if(objectPath == null) {
364
            throw new SolrServerException("The indexed document itself for pid "+pid.getValue()+" should not be null.");
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        }
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    }
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    /**
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     * Insert the indexes for a document.
370
     * @param pid  the id of this document
371
     * @param systemMetadata  the system metadata associated with the data object
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     * @param data  the path to the object file itself
373
     * @throws SolrServerException 
374
     * @throws MarshallingException 
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     * @throws EncoderException 
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     * @throws UnsupportedType 
377
     * @throws NotFound 
378
     * @throws NotImplemented 
379
     */
380
    private synchronized void insert(Identifier pid, SystemMetadata systemMetadata, String objectPath) 
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                    throws IOException, SAXException, ParserConfigurationException,
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                    XPathExpressionException, SolrServerException, MarshallingException, EncoderException, NotImplemented, NotFound, UnsupportedType {
383
        checkParams(pid, systemMetadata, objectPath);
384
        Map<String, SolrDoc> docs = process(pid.getValue(), systemMetadata, objectPath);
385
        
386
        //transform the Map to the SolrInputDocument which can be used by the solr server
387
        if(docs != null) {
388
            Set<String> ids = docs.keySet();
389
            for(String id : ids) {
390
                if(id != null) {
391
                    SolrDoc doc = docs.get(id);
392
                    insertToIndex(doc);
393
                }
394
                
395
            }
396
        }
397
    }
398
    
399
    /**
400
     * Adds the given fields to the solr index for the given pid, preserving the index values
401
     * that previously existed
402
     * @param pid
403
     * @param fields
404
     */
405
    public void insertFields(Identifier pid, Map<String, List<Object>> fields) {
406
    	
407
    	try {
408
			// copy the original values already indexed for this document	
409
	    	SolrQuery query = new SolrQuery("id:\"" + pid.getValue() + "\"");
410
	    	QueryResponse res = solrServer.query(query);
411
	    	SolrDoc doc = new SolrDoc();
412
	    	
413
	    	// include existing values if they exist
414
	        IndexSchema indexSchema = SolrQueryServiceController.getInstance().getSchema();
415

    
416
	        if (res.getResults().size() > 0) {
417
		        SolrDocument orig = res.getResults().get(0);
418
		    	for (String fieldName: orig.getFieldNames()) {
419
		        	//  don't transfer the copyTo fields, otherwise there are errors
420
		        	if (indexSchema.isCopyFieldTarget(indexSchema.getField(fieldName))) {
421
		        		continue;
422
		        	}
423
		        	for (Object value: orig.getFieldValues(fieldName)) {
424
		        		String stringValue = value.toString();
425
		        		// special handling for dates in ISO 8601
426
		        		if (value instanceof Date) {
427
		        			stringValue = DateTimeMarshaller.serializeDateToUTC((Date)value);
428
		        			SolrDateConverter converter = new SolrDateConverter();
429
		        			stringValue = converter.convert(stringValue);
430
		        		}
431
						SolrElementField field = new SolrElementField(fieldName, stringValue);
432
						log.debug("Adding field: " + fieldName);
433
						doc.addField(field);
434
		        	}
435
		        }
436
	        }
437
	    	
438
	        // add the additional fields we are trying to include in the index
439
	        for (String fieldName: fields.keySet()) {
440
	    		List<Object> values = fields.get(fieldName);
441
	    		for (Object value: values) {
442
	    			if (!doc.hasFieldWithValue(fieldName, value.toString())) {
443
	    				if (indexSchema.getField(fieldName).multiValued()) {
444
	    					doc.addField(new SolrElementField(fieldName, value.toString()));
445
	    				} else {
446
	    	    	    	doc.updateOrAddField(fieldName, value.toString());
447
	    				}
448
	    			}
449
	    		}
450
	    	}
451
	        
452
	        // make sure there is an id in the solrdoc so it is added to the index
453
	        if (!doc.hasField(ID)) {
454
	        	doc.updateOrAddField(ID, pid.getValue());
455
	        }
456
	        
457
	        // insert the whole thing
458
	        insertToIndex(doc);
459
    	} catch (Exception e) {
460
    		String error = "SolrIndex.insetFields - could not update the solr index: " + e.getMessage();
461
            writeEventLog(null, pid, error);
462
            log.error(error, e);
463
    	}
464

    
465
    }
466
    
467
    /*
468
     * Insert a SolrDoc to the solr server.
469
     */
470
    private synchronized void insertToIndex(SolrDoc doc) throws SolrServerException, IOException {
471
        if(doc != null ) {
472
            SolrInputDocument solrDoc = new SolrInputDocument();
473
            List<SolrElementField> list = doc.getFieldList();
474
            if(list != null) {
475
                //solrDoc.addField(METACATPIDFIELD, pid);
476
                Iterator<SolrElementField> iterator = list.iterator();
477
                while (iterator.hasNext()) {
478
                    SolrElementField field = iterator.next();
479
                    if(field != null) {
480
                        String value = field.getValue();
481
                        String name = field.getName();
482
                        //System.out.println("add name/value pair - "+name+"/"+value);
483
                        solrDoc.addField(name, value);
484
                    }
485
                }
486
            }
487
            if(!solrDoc.isEmpty()) {
488
                /*IndexEvent event = new IndexEvent();
489
                event.setDate(Calendar.getInstance().getTime());
490
                Identifier pid = new Identifier();
491
                pid.setValue(doc.getIdentifier());
492
                event.setIdentifier(pid);*/
493
                try {
494
                    UpdateResponse response = solrServer.add(solrDoc);
495
                    solrServer.commit();
496
                    /*event.setType(IndexEvent.SUCCESSINSERT);
497
                    event.setDescription("Successfully insert the solr index for the id "+pid.getValue());
498
                    try {
499
                        EventlogFactory.createIndexEventLog().write(event);
500
                    } catch (Exception e) {
501
                        log.error("SolrIndex.insertToIndex - IndexEventLog can't log the index inserting event :"+e.getMessage());
502
                    }*/
503
                } catch (SolrServerException e) {
504
                    /*event.setAction(Event.CREATE);
505
                    event.setDescription("Failed to insert the solr index for the id "+pid.getValue()+" since "+e.getMessage());
506
                    try {
507
                        EventlogFactory.createIndexEventLog().write(event);
508
                    } catch (Exception ee) {
509
                        log.error("SolrIndex.insertToIndex - IndexEventLog can't log the index inserting event :"+ee.getMessage());
510
                    }*/
511
                    throw e;
512
                } catch (IOException e) {
513
                    /*event.setAction(Event.CREATE);
514
                    event.setDescription("Failed to insert the solr index for the id "+pid.getValue()+" since "+e.getMessage());
515
                    try {
516
                        EventlogFactory.createIndexEventLog().write(event);
517
                    } catch (Exception ee) {
518
                        log.error("SolrIndex.insertToIndex - IndexEventLog can't log the index inserting event :"+ee.getMessage());
519
                    }*/
520
                    throw e;
521
                    
522
                }
523
                //System.out.println("=================the response is:\n"+response.toString());
524
            }
525
        }
526
    }
527
    
528
    /**
529
     * Update the solr index. This method handles the three scenarios:
530
     * 1. Remove an existing doc - if the the system metadata shows the value of the archive is true,
531
     *    remove the index for the previous version(s) and generate new index for the doc.
532
     * 2. Add a new doc - if the system metadata shows the value of the archive is false, generate the
533
     *    index for the doc.
534
     */
535
    public void update(Identifier pid, SystemMetadata systemMetadata) {
536
        if(systemMetadata==null || pid==null) {
537
            log.error("SolrIndex.update - the systemMetadata or pid is null. So nothing will be indexed.");
538
            return;
539
        }
540
        String objectPath = null;
541
        try {
542
            if (systemMetadata.getArchived() == null || !systemMetadata.getArchived()) {
543
                objectPath = DistributedMapsFactory.getObjectPathMap().get(pid);
544
            }
545
            update(pid, systemMetadata, objectPath);
546
            EventlogFactory.createIndexEventLog().remove(pid);
547
        } catch (Exception e) {
548
            String error = "SolrIndex.update - could not update the solr index since " + e.getMessage();
549
            writeEventLog(systemMetadata, pid, error);
550
            log.error(error, e);
551
        }
552
    }
553
   
554
    
555
    /**
556
     * Update the solr index. This method handles the three scenarios:
557
     * 1. Remove an existing doc - if the the system metadata shows the value of the archive is true,
558
     *    remove the index for the previous version(s) and generate new index for the doc.
559
     * 2. Add a new doc - if the system metadata shows the value of the archive is false, generate the
560
     *    index for the doc.
561
     * @param pid
562
     * @param systemMetadata
563
     * @param data
564
     * @throws SolrServerException
565
     * @throws ServiceFailure
566
     * @throws XPathExpressionException
567
     * @throws NotImplemented
568
     * @throws NotFound
569
     * @throws UnsupportedType
570
     * @throws IOException
571
     * @throws SAXException
572
     * @throws ParserConfigurationException
573
     * @throws OREParserException
574
     * @throws MarshallingException
575
     * @throws EncoderException
576
     */
577
    void update(Identifier pid, SystemMetadata systemMetadata, String objectPath) throws Exception {
578
        //checkParams(pid, systemMetadata, objectPath);
579
        if(systemMetadata==null || pid==null) {
580
            log.error("SolrIndex.update - the systemMetadata or pid is null. So nothing will be indexed.");
581
            return;
582
        }
583
        boolean isArchive = systemMetadata.getArchived() != null && systemMetadata.getArchived();
584
        if(isArchive ) {
585
            //delete the index for the archived objects
586
            remove(pid.getValue(), systemMetadata);
587
            log.info("SolrIndex.update============================= archive the idex for the identifier "+pid);
588
        } else {
589
            //generate index for either add or update.
590
            insert(pid, systemMetadata, objectPath);
591
            log.info("SolrIndex.update============================= insert index for the identifier "+pid);
592
        }
593
    }
594
    
595
   
596

    
597
    /*
598
     * Is the pid a resource map
599
     */
600
    private boolean isDataPackage(String pid, SystemMetadata sysmeta) throws FileNotFoundException, ServiceFailure {
601
        boolean isDataPackage = false;
602
        //SystemMetadata sysmeta = DistributedMapsFactory.getSystemMetadata(pid);
603
        if(sysmeta != null) {
604
            isDataPackage = IndexGeneratorTimerTask.isResourceMap(sysmeta.getFormatId());
605
        }
606
        return isDataPackage;
607
    }
608

    
609
    private boolean isPartOfDataPackage(String pid) throws XPathExpressionException, NotImplemented, NotFound, UnsupportedType, SolrServerException, IOException, ParserConfigurationException, SAXException {
610
        SolrDoc dataPackageIndexDoc = ResourceMapSubprocessor.getSolrDoc(pid);
611
        if (dataPackageIndexDoc != null) {
612
            String resourceMapId = dataPackageIndexDoc
613
                    .getFirstFieldValue(SolrElementField.FIELD_RESOURCEMAP);
614
            return StringUtils.isNotEmpty(resourceMapId);
615
        } else {
616
            return false;
617
        }
618
    }
619
    /**
620
     * Remove the indexed associated with specified pid.
621
     * @param pid  the pid which the indexes are associated with
622
     * @throws IOException
623
     * @throws SolrServerException
624
     * @throws ParserConfigurationException 
625
     * @throws SAXException 
626
     * @throws UnsupportedType 
627
     * @throws NotFound 
628
     * @throws NotImplemented 
629
     * @throws XPathExpressionException 
630
     * @throws ServiceFailure 
631
     * @throws OREParserException 
632
     */
633
    private void remove(String pid, SystemMetadata sysmeta) throws Exception {
634
        if (isDataPackage(pid, sysmeta)) {
635
            removeDataPackage(pid);
636
        } else if (isPartOfDataPackage(pid)) {
637
            removeFromDataPackage(pid);
638
        } else {
639
            removeFromIndex(pid);
640
        }
641
    }
642
    
643
    /*
644
     * Remove the resource map from the solr index. It doesn't only remove the index for itself and also
645
     * remove the relationship for the related metadata and data objects.
646
     */
647
    private void removeDataPackage(String pid) throws Exception {
648
        removeFromIndex(pid);
649
        List<SolrDoc> docsToUpdate = getUpdatedSolrDocsByRemovingResourceMap(pid);
650
        if (docsToUpdate != null && !docsToUpdate.isEmpty()) {
651
            //SolrElementAdd addCommand = new SolrElementAdd(docsToUpdate);
652
            //httpService.sendUpdate(solrIndexUri, addCommand);
653
            for(SolrDoc doc : docsToUpdate) {
654
                removeFromIndex(doc.getIdentifier());
655
                insertToIndex(doc);
656
            }
657
        }
658

    
659
    }
660

    
661
    /*
662
     * Get the list of the solr doc which need to be updated because the removal of the resource map
663
     */
664
    private List<SolrDoc> getUpdatedSolrDocsByRemovingResourceMap(String resourceMapId)
665
            throws UnsupportedType, NotFound, SolrServerException, ParserConfigurationException, SAXException, MalformedURLException, IOException, XPathExpressionException {
666
        List<SolrDoc> updatedSolrDocs = null;
667
        if (resourceMapId != null && !resourceMapId.trim().equals("")) {
668
            /*List<SolrDoc> docsContainResourceMap = httpService.getDocumentsByResourceMap(
669
                    solrQueryUri, resourceMapId);*/
670
            List<SolrDoc> docsContainResourceMap = ResourceMapSubprocessor.getDocumentsByResourceMap(resourceMapId);
671
            updatedSolrDocs = removeResourceMapRelationship(docsContainResourceMap,
672
                    resourceMapId);
673
        }
674
        return updatedSolrDocs;
675
    }
676

    
677
    /*
678
     * Get the list of the solr doc which need to be updated because the removal of the resource map
679
     */
680
    private List<SolrDoc> removeResourceMapRelationship(List<SolrDoc> docsContainResourceMap,
681
            String resourceMapId) throws XPathExpressionException, IOException {
682
        List<SolrDoc> totalUpdatedSolrDocs = new ArrayList<SolrDoc>();
683
        if (docsContainResourceMap != null && !docsContainResourceMap.isEmpty()) {
684
            for (SolrDoc doc : docsContainResourceMap) {
685
                List<SolrDoc> updatedSolrDocs = new ArrayList<SolrDoc>();
686
                List<String> resourceMapIdStrs = doc
687
                        .getAllFieldValues(SolrElementField.FIELD_RESOURCEMAP);
688
                List<String> dataIdStrs = doc
689
                        .getAllFieldValues(SolrElementField.FIELD_DOCUMENTS);
690
                List<String> metadataIdStrs = doc
691
                        .getAllFieldValues(SolrElementField.FIELD_ISDOCUMENTEDBY);
692
                if ((dataIdStrs == null || dataIdStrs.isEmpty())
693
                        && (metadataIdStrs == null || metadataIdStrs.isEmpty())) {
694
                    // only has resourceMap field, doesn't have either documentBy or documents fields.
695
                    // so we only remove the resource map field.
696
                    doc.removeFieldsWithValue(SolrElementField.FIELD_RESOURCEMAP, resourceMapId);
697
                    updatedSolrDocs.add(doc);
698
                } else if ((dataIdStrs != null && !dataIdStrs.isEmpty())
699
                        && (metadataIdStrs == null || metadataIdStrs.isEmpty())) {
700
                    //The solr doc is for a metadata object since the solr doc documents data files
701
                    updatedSolrDocs = removeAggregatedItems(resourceMapId, doc, resourceMapIdStrs,
702
                            dataIdStrs, SolrElementField.FIELD_DOCUMENTS);
703
                } else if ((dataIdStrs == null || dataIdStrs.isEmpty())
704
                        && (metadataIdStrs != null && !metadataIdStrs.isEmpty())) {
705
                    //The solr doc is for a data object since it documentedBy elements.
706
                    updatedSolrDocs = removeAggregatedItems(resourceMapId, doc, resourceMapIdStrs,
707
                            metadataIdStrs, SolrElementField.FIELD_ISDOCUMENTEDBY);
708
                } else if ((dataIdStrs != null && !dataIdStrs.isEmpty())
709
                        && (metadataIdStrs != null && !metadataIdStrs.isEmpty())){
710
                    // both metadata and data for one object
711
                    List<SolrDoc> solrDocsRemovedDocuments = removeAggregatedItems(resourceMapId, doc, resourceMapIdStrs,
712
                            dataIdStrs, SolrElementField.FIELD_DOCUMENTS);
713
                    List<SolrDoc> solrDocsRemovedDocumentBy = removeAggregatedItems(resourceMapId, doc, resourceMapIdStrs,
714
                            metadataIdStrs, SolrElementField.FIELD_ISDOCUMENTEDBY);
715
                    updatedSolrDocs = mergeUpdatedSolrDocs(solrDocsRemovedDocumentBy, solrDocsRemovedDocuments);
716
                }
717
                //move them to the final result
718
                if(updatedSolrDocs != null) {
719
                    for(SolrDoc updatedDoc: updatedSolrDocs) {
720
                        totalUpdatedSolrDocs.add(updatedDoc);
721
                    }
722
                }
723
                
724
            }
725

    
726
        }
727
        return totalUpdatedSolrDocs;
728
    }
729
    
730
    /*
731
     * Process the list of ids of the documentBy/documents in a slor doc.
732
     */
733
    private List<SolrDoc> removeAggregatedItems(String targetResourceMapId, SolrDoc doc,
734
            List<String> resourceMapIdsInDoc, List<String> aggregatedItemsInDoc, String fieldNameRemoved) {
735
        List<SolrDoc> updatedSolrDocs = new ArrayList<SolrDoc>();
736
        if (doc != null && resourceMapIdsInDoc != null && aggregatedItemsInDoc != null
737
                && fieldNameRemoved != null) {
738
            if (resourceMapIdsInDoc.size() == 1) {
739
                //only has one resource map. remove the resource map. also remove the documentBy
740
                doc.removeFieldsWithValue(SolrElementField.FIELD_RESOURCEMAP, targetResourceMapId);
741
                doc.removeAllFields(fieldNameRemoved);
742
                updatedSolrDocs.add(doc);
743
            } else if (resourceMapIdsInDoc.size() > 1) {
744
                //we have multiple resource maps. We should match them.                     
745
                Map<String, String> ids = matchResourceMapsAndItems(doc.getIdentifier(),
746
                        targetResourceMapId, resourceMapIdsInDoc, aggregatedItemsInDoc, fieldNameRemoved);
747
                if (ids != null) {
748
                    for (String id : ids.keySet()) {
749
                        doc.removeFieldsWithValue(fieldNameRemoved, id);
750
                    }
751
                }
752
                doc.removeFieldsWithValue(SolrElementField.FIELD_RESOURCEMAP,
753
                        targetResourceMapId);
754
                updatedSolrDocs.add(doc);
755
                /*if (aggregatedItemsInDoc.size() > 1) {
756
                    
757

    
758
                } else {
759
                    //multiple resource map aggregate same metadata and data. Just remove the resource map
760
                    doc.removeFieldsWithValue(SolrElementField.FIELD_RESOURCEMAP,
761
                            targetResourceMapId);
762
                    updatedSolrDocs.add(doc);
763
                }*/
764
            }
765
        }
766
        return updatedSolrDocs;
767
    }
768

    
769
    /*
770
     * Return a map of mapping aggregation id map the target resourceMapId.
771
     * This will look the aggregation information in another side - If the targetId
772
     * is a metadata object, we will look the data objects which it describes; If 
773
     * the targetId is a data object, we will look the metadata object which documents it.
774
     */
775
    private Map<String, String> matchResourceMapsAndItems(String targetId,
776
            String targetResourceMapId, List<String> originalResourceMaps, List<String> aggregatedItems, String fieldName) {
777
        Map<String, String> map = new HashMap<String, String>();
778
        if (targetId != null && targetResourceMapId != null && aggregatedItems != null
779
                && fieldName != null) {
780
            String newFieldName = null;
781
            if (fieldName.equals(SolrElementField.FIELD_ISDOCUMENTEDBY)) {
782
                newFieldName = SolrElementField.FIELD_DOCUMENTS;
783
            } else if (fieldName.equals(SolrElementField.FIELD_DOCUMENTS)) {
784
                newFieldName = SolrElementField.FIELD_ISDOCUMENTEDBY;
785
            }
786
            if (newFieldName != null) {
787
                for (String item : aggregatedItems) {
788
                    SolrDoc doc = null;
789
                    try {
790
                        doc = getDocumentById(item);
791
                        List<String> fieldValues = doc.getAllFieldValues(newFieldName);
792
                        List<String> resourceMapIds = doc
793
                                .getAllFieldValues(SolrElementField.FIELD_RESOURCEMAP);
794
                        if ((fieldValues != null && fieldValues.contains(targetId))
795
                                && (resourceMapIds != null && resourceMapIds
796
                                        .contains(targetResourceMapId))) {
797
                            //okay, we found the target aggregation item id and the resource map id
798
                            //in this solr doc. However, we need check if another resource map with different
799
                            //id but specify the same relationship. If we have the id(s), we should not
800
                            // remove the documents( or documentBy) element since we need to preserve the 
801
                            // relationship for the remain resource map. 
802
                            boolean hasDuplicateIds = false;
803
                            if(originalResourceMaps != null) {
804
                               for(String id :resourceMapIds) {
805
                                    if (originalResourceMaps.contains(id) && !id.equals(targetResourceMapId)) {
806
                                        hasDuplicateIds = true;
807
                                        break;
808
                                    }
809
                                }
810
                            }
811
                            if(!hasDuplicateIds) {
812
                                map.put(item, targetResourceMapId);
813
                            }
814
                            
815
                        }
816
                    } catch (Exception e) {
817
                        log.warn("SolrIndex.matchResourceMapsAndItems - can't get the solrdoc for the id "
818
                                + item + " since " + e.getMessage());
819
                    }
820
                }
821
            }
822
        }
823
        return map;
824
    }
825

    
826
    /*
827
     * Get the solr index doc from the index server for the given id.
828
     */
829
    private SolrDoc getDocumentById(String id) throws NotImplemented, NotFound, UnsupportedType, 
830
                SolrServerException, ParserConfigurationException, SAXException, XPathExpressionException, IOException {
831
        SolrDoc doc = ResourceMapSubprocessor.getSolrDoc(id);
832
        return doc;
833
    }
834
    
835
    /*
836
     * Merge two list of updated solr docs. removedDocumentBy has the correct information about documentBy element.
837
     * removedDocuments has the correct information about the documents element.
838
     * So we go through the two list and found the two docs having the same identifier.
839
     * Get the list of the documents value from the one in the removedDoucments (1). 
840
     * Remove all values of documents from the one in the removedDocumentBy. 
841
     * Then copy the list of documents value from (1) to to the one in the removedDocumentBy.
842
     */
843
    private List<SolrDoc> mergeUpdatedSolrDocs(List<SolrDoc>removedDocumentBy, List<SolrDoc>removedDocuments) {
844
        List<SolrDoc> mergedDocuments = new ArrayList<SolrDoc>();
845
        if(removedDocumentBy == null || removedDocumentBy.isEmpty()) {
846
            mergedDocuments = removedDocuments;
847
        } else if (removedDocuments == null || removedDocuments.isEmpty()) {
848
            mergedDocuments = removedDocumentBy;
849
        } else {
850
            int sizeOfDocBy = removedDocumentBy.size();
851
            int sizeOfDocs = removedDocuments.size();
852
            for(int i=sizeOfDocBy-1; i>= 0; i--) {
853
                SolrDoc docInRemovedDocBy = removedDocumentBy.get(i);
854
                for(int j= sizeOfDocs-1; j>=0; j--) {
855
                    SolrDoc docInRemovedDocs = removedDocuments.get(j);
856
                    if(docInRemovedDocBy.getIdentifier().equals(docInRemovedDocs.getIdentifier())) {
857
                        //find the same doc in both list. let's merge them.
858
                        //first get all the documents element from the docWithDocs(it has the correct information about the documents element)
859
                        List<String> idsInDocuments = docInRemovedDocs.getAllFieldValues(SolrElementField.FIELD_DOCUMENTS);
860
                        docInRemovedDocBy.removeAllFields(SolrElementField.FIELD_DOCUMENTS);//clear out any documents element in docInRemovedDocBy
861
                        //add the Documents element from the docInRemovedDocs if it has any.
862
                        // The docInRemovedDocs has the correct information about the documentBy. Now it copied the correct information of the documents element.
863
                        // So docInRemovedDocs has both correct information about the documentBy and documents elements.
864
                        if(idsInDocuments != null) {
865
                            for(String id : idsInDocuments) {
866
                                if(id != null && !id.trim().equals("")) {
867
                                    docInRemovedDocBy.addField(new SolrElementField(SolrElementField.FIELD_DOCUMENTS, id));
868
                                }
869
                                
870
                            }
871
                        }
872
                        //intersect the resource map ids.
873
                        List<String> resourceMapIdsInWithDocs = docInRemovedDocs.getAllFieldValues(SolrElementField.FIELD_RESOURCEMAP);
874
                        List<String> resourceMapIdsInWithDocBy = docInRemovedDocBy.getAllFieldValues(SolrElementField.FIELD_RESOURCEMAP);
875
                        docInRemovedDocBy.removeAllFields(SolrElementField.FIELD_RESOURCEMAP);
876
                        Collection resourceMapIds = CollectionUtils.union(resourceMapIdsInWithDocs, resourceMapIdsInWithDocBy);
877
                        if(resourceMapIds != null) {
878
                            for(Object idObj : resourceMapIds) {
879
                                String id = (String)idObj;
880
                                docInRemovedDocBy.addField(new SolrElementField(SolrElementField.FIELD_RESOURCEMAP, id));
881
                            }
882
                        }
883
                        //we don't need do anything about the documentBy elements since the docInRemovedDocBy has the correct information.
884
                        mergedDocuments.add(docInRemovedDocBy);
885
                        //delete the two documents from the list
886
                        removedDocumentBy.remove(i);
887
                        removedDocuments.remove(j);
888
                        break;
889
                    }
890
                    
891
                }
892
            }
893
            // when we get there, if the two lists are empty, this will be a perfect merge. However, if something are left. we 
894
            //just put them in.
895
            for(SolrDoc doc: removedDocumentBy) {
896
                mergedDocuments.add(doc);
897
            }
898
            for(SolrDoc doc: removedDocuments) {
899
                mergedDocuments.add(doc);
900
            }
901
        }
902
        return mergedDocuments;
903
    }
904
    
905

    
906
    /*
907
     * Remove a pid which is part of resource map.
908
     */
909
    private void removeFromDataPackage(String pid) throws Exception  {
910
        SolrDoc indexedDoc = ResourceMapSubprocessor.getSolrDoc(pid);
911
        removeFromIndex(pid);
912
        List<SolrDoc> docsToUpdate = new ArrayList<SolrDoc>();
913

    
914
        List<String> documents = indexedDoc.getAllFieldValues(SolrElementField.FIELD_DOCUMENTS);
915
        for (String documentsValue : documents) {
916
            SolrDoc solrDoc = ResourceMapSubprocessor.getSolrDoc(documentsValue);
917
            solrDoc.removeFieldsWithValue(SolrElementField.FIELD_ISDOCUMENTEDBY, pid);
918
            removeFromIndex(documentsValue);
919
            insertToIndex(solrDoc);
920
        }
921

    
922
        List<String> documentedBy = indexedDoc
923
                .getAllFieldValues(SolrElementField.FIELD_ISDOCUMENTEDBY);
924
        for (String documentedByValue : documentedBy) {
925
            SolrDoc solrDoc = ResourceMapSubprocessor.getSolrDoc(documentedByValue);
926
            solrDoc.removeFieldsWithValue(SolrElementField.FIELD_DOCUMENTS, pid);
927
            //docsToUpdate.add(solrDoc);
928
            removeFromIndex(documentedByValue);
929
            insertToIndex(solrDoc);
930
        }
931

    
932
        //SolrElementAdd addCommand = new SolrElementAdd(docsToUpdate);
933
        //httpService.sendUpdate(solrIndexUri, addCommand);
934
    }
935

    
936
    /*
937
     * Remove a pid from the solr index
938
     */
939
    private synchronized void removeFromIndex(String identifier) throws Exception {
940
    	
941
    	
942
    	Map<String, SolrDoc> docs = new HashMap<String, SolrDoc>();
943

    
944
        for (IDocumentDeleteSubprocessor deleteSubprocessor : deleteSubprocessors) {
945
            docs.putAll(deleteSubprocessor.processDocForDelete(identifier, docs));
946
        }
947
        List<SolrDoc> docsToUpdate = new ArrayList<SolrDoc>();
948
        List<String> idsToIndex = new ArrayList<String>();
949
        for (String idToUpdate : docs.keySet()) {
950
            if (docs.get(idToUpdate) != null) {
951
                docsToUpdate.add(docs.get(idToUpdate));
952
            } else {
953
                idsToIndex.add(idToUpdate);
954
            }
955
        }
956

    
957
        // update the docs we have
958
        for (SolrDoc docToUpdate : docsToUpdate) {
959
        	insertToIndex(docToUpdate);
960
        }
961
        
962
        // delete this one
963
        deleteDocFromIndex(identifier);
964

    
965
        // index the rest
966
        for (String idToIndex : idsToIndex) {
967
        	Identifier pid = new Identifier();
968
        	pid.setValue(idToIndex);
969
            SystemMetadata sysMeta = DistributedMapsFactory.getSystemMetadata(idToIndex);
970
            if (SolrDoc.visibleInIndex(sysMeta)) {
971
                String objectPath = DistributedMapsFactory.getObjectPathMap().get(pid);
972
                insert(pid, sysMeta, objectPath);
973
            }
974
        }
975
    		
976
    }
977
    
978
    private void deleteDocFromIndex(String pid) throws Exception {
979
    	if (pid != null && !pid.trim().equals("")) {
980
            /*IndexEvent event = new IndexEvent();
981
            event.setDate(Calendar.getInstance().getTime());
982
            Identifier identifier = new Identifier();
983
            identifier.setValue(pid);
984
            event.setIdentifier(identifier);*/
985
            try {
986
                solrServer.deleteById(pid);
987
                solrServer.commit();
988
                /*event.setType(IndexEvent.SUCCESSDELETE);
989
                event.setDescription("Successfully remove the solr index for the id "+identifier.getValue());
990
                try {
991
                    EventlogFactory.createIndexEventLog().write(event);
992
                } catch (Exception e) {
993
                    log.error("SolrIndex.removeFromIndex - IndexEventLog can't log the index deleting event :"+e.getMessage());
994
                }*/
995
            } catch (SolrServerException e) {
996
                /*event.setAction(Event.DELETE);
997
                event.setDescription("Failurely remove the solr index for the id "+identifier.getValue()+" since "+e.getMessage());
998
                try {
999
                    EventlogFactory.createIndexEventLog().write(event);
1000
                } catch (Exception ee) {
1001
                    log.error("SolrIndex.removeFromIndex - IndexEventLog can't log the index deleting event :"+ee.getMessage());
1002
                }*/
1003
                throw e;
1004
                
1005
            } catch (IOException e) {
1006
                /*event.setAction(Event.DELETE);
1007
                event.setDescription("Failurely remove the solr index for the id "+identifier.getValue()+" since "+e.getMessage());
1008
                try {
1009
                    EventlogFactory.createIndexEventLog().write(event);
1010
                } catch (Exception ee) {
1011
                    log.error("SolrIndex.removeFromIndex - IndexEventLog can't log the index deleting event :"+ee.getMessage());
1012
                }*/
1013
                throw e;
1014
            }
1015
            
1016
        }
1017
    
1018
    }
1019

    
1020
    /**
1021
     * Get the solrServer
1022
     * @return
1023
     */
1024
    public SolrServer getSolrServer() {
1025
        return solrServer;
1026
    }
1027

    
1028
    /**
1029
     * Set the solrServer. 
1030
     * @param solrServer
1031
     */
1032
    public void setSolrServer(SolrServer solrServer) {
1033
        this.solrServer = solrServer;
1034
    }
1035
    
1036
    /**
1037
     * Get all indexed ids in the solr server. 
1038
     * @return an empty list if there is no index.
1039
     * @throws SolrServerException
1040
     */
1041
    public List<String> getSolrIds() throws SolrServerException {
1042
        List<String> list = new ArrayList<String>();
1043
        SolrQuery query = new SolrQuery(IDQUERY); 
1044
        query.setRows(Integer.MAX_VALUE); 
1045
        query.setFields(ID); 
1046
        QueryResponse response = solrServer.query(query); 
1047
        SolrDocumentList docs = response.getResults();
1048
        if(docs != null) {
1049
            for(SolrDocument doc :docs) {
1050
                String identifier = (String)doc.getFieldValue(ID);
1051
                //System.out.println("======================== "+identifier);
1052
                list.add(identifier);
1053
            }
1054
        }
1055
        return list;
1056
    }
1057
    
1058
    private void writeEventLog(SystemMetadata systemMetadata, Identifier pid, String error) {
1059
        IndexEvent event = new IndexEvent();
1060
        event.setIdentifier(pid);
1061
        event.setDate(Calendar.getInstance().getTime());
1062
        String action = null;
1063
        if (systemMetadata == null ) {
1064
            action = Event.CREATE.xmlValue();
1065
            event.setAction(Event.CREATE);
1066
        }
1067
        else if(systemMetadata.getArchived() != null && systemMetadata.getArchived()) {
1068
            action = Event.DELETE.xmlValue();
1069
            event.setAction(Event.DELETE);
1070
        } else {
1071
            action = Event.CREATE.xmlValue();
1072
            event.setAction(Event.CREATE);
1073
        }
1074
        event.setDescription("Failed to "+action+"the solr index for the id "+pid.getValue()+" since "+error);
1075
        try {
1076
            EventlogFactory.createIndexEventLog().write(event);
1077
        } catch (Exception ee) {
1078
            log.error("SolrIndex.insertToIndex - IndexEventLog can't log the index inserting event :"+ee.getMessage());
1079
        }
1080
    }
1081
}
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