correctly configure metacat-index to use metacat context/deployment location. https://projects.ecoinformatics.org/ecoinfo/issues/6138
Reviewed code for all uses of FileInputStream, checking to see if the method should be closing the stream, and if so, closing it in the method as well as in the finally clause to ensure we don't leak file descriptors.
Sparate the action reindex and reindexall.
Closing some more streams that were left open. This Bug #6136 seems to be pervasive and is going to require an extensive audit to find all of the places where streams are not closed properly.
Refactor to use IOUtils.closeQuietly() which handles nulls and streams that are already closed.
Added close() to finally block for readFromFileSystem() call.
Closing FileOutputStream handles so that the OS limits on filehandles are not exceeded.
Add code to delete existing records for a id when we try to add the id to the index_event table.
do not modify existing SystemMetadata on MN.update() if something goes wrong during content insertion. https://projects.ecoinformatics.org/ecoinfo/issues/6101
Refer to metacat.war deployments since those are now the default. https://projects.ecoinformatics.org/ecoinfo/issues/6082
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