Metacat

/*

 * Changes to the tables for handling identifiers.  Old table no longer needed,

 * new identifier table to be used to support LSIDs.

 */

DROP TABLE accession_number;

DROP SEQUENCE accession_number_id_seq;

/*

 * Table used to store all document identifiers in metacat.  Each identifier

 * consists of 4 subparts, an authority, namespace, object, and revision as

 * defined in the LSID specification.

 */

CREATE SEQUENCE identifier_id_seq;

CREATE TABLE identifier (

   id INT8 default nextval('identifier_id_seq') PRIMARY KEY, -- primary id

   authority VARCHAR(255),  -- the authority issuing the identifier

   namespace VARCHAR(255),  -- the namespace qualifying the identifier

   object    VARCHAR(255),  -- the local part of the identifier for a particular object

   revision  VARCHAR(255)   -- the revision part of the identifier

);

/*

 * Table for indexing the paths specified the administrator in metacat.properties

 */

CREATE SEQUENCE xml_path_index_id_seq;

CREATE TABLE xml_path_index (

        nodeid INT8  default nextval('xml_path_index_id_seq'),

        docid VARCHAR(250),     -- the document id

        path VARCHAR(1000),     -- precomputed path through tree

        nodedata VARCHAR(4000), -- the data for this node (e.g.,

                                -- for TEXT it is the content)

        nodedatanumerical FLOAT8, -- the data for this node if

                                  -- if it is a number

        parentnodeid INT8,      -- id of the parent of the node represented

                                -- by this row

        CONSTRAINT xml_path_index_pk PRIMARY KEY (nodeid),

        CONSTRAINT xml_path_index_docid_fk

                FOREIGN KEY (docid) REFERENCES xml_documents

);

/*

 * Indexes of path, nodedata and nodedatanumerical in xml_path_index

 */

CREATE INDEX xml_path_index_idx1 ON xml_path_index (path);

CREATE INDEX xml_path_index_idx2 ON xml_path_index (nodedata);

CREATE INDEX xml_path_index_idx3 ON xml_path_index (nodedatanumerical);

/*

 * Table for storing the nodes for the old revisions of the document and the deleted documents

 */

CREATE TABLE xml_nodes_revisions (

        nodeid INT8,            -- the unique node id (pk)

        nodeindex INT8,         -- order of nodes within parent

        nodetype VARCHAR(20),   -- type (DOCUMENT, COMMENT, PI,

                                -- ELEMENT, ATTRIBUTE, TEXT)

        nodename VARCHAR(250),  -- the name of an element or attribute

        nodeprefix VARCHAR(50), -- the namespace prefix of the node

        nodedata VARCHAR(4000), -- the data for this node (e.g.,

                                -- for TEXT it is the content)

        parentnodeid INT8,      -- index of the parent of this node

        rootnodeid INT8,        -- index of the root node of this tree

        docid VARCHAR(250),     -- index to the document id

        date_created DATE,

        date_updated DATE,

        nodedatanumerical FLOAT8, -- the data for this node if

                                  -- if it is a number

        CONSTRAINT xml_nodes_revisions_pk PRIMARY KEY (nodeid),

        CONSTRAINT xml_nodes_revisions_root_fk

                FOREIGN KEY (rootnodeid) REFERENCES xml_nodes_revisions,

        CONSTRAINT xml_nodes_revisions_parent_fk

                FOREIGN KEY (parentnodeid) REFERENCES xml_nodes_revisions

);

/*

 * Indexes of rootnodeid, parentnodeid, and nodename in xml_nodes_revisions

 */

CREATE INDEX xml_nodes_revisions_idx1 ON xml_nodes_revisions (rootnodeid);

CREATE INDEX xml_nodes_revisions_idx2 ON xml_nodes_revisions (parentnodeid);

CREATE INDEX xml_nodes_revisions_idx3 ON xml_nodes_revisions (nodename);

/**

 * Drop the constraint from xml_revisions which points to xml_nodes

 */

ALTER TABLE xml_revisions DROP CONSTRAINT xml_revisions_root_fk;

/**

 * Copy the nodes from xml_nodes to xml_nodes_revisions for old revisions

 * of the documents and deleted documents

 */

INSERT INTO xml_nodes_revisions (nodeid, nodeindex, nodetype,

nodename, nodeprefix, nodedata, parentnodeid, rootnodeid, docid,

date_created, date_updated, nodedatanumerical) SELECT n.nodeid,

n.nodeindex, n.nodetype, n.nodename, n.nodeprefix, n.nodedata,

n.parentnodeid, n.rootnodeid, n.docid, n.date_created, n.date_updated,

n.nodedatanumerical FROM xml_nodes n LEFT JOIN xml_documents

ON n.rootnodeid = xml_documents.rootnodeid WHERE

xml_documents.rootnodeid IS NULL;

/**

 * Create the key constraint in xml_revisions which points to

 * xml_nodes_revisions

 */

ALTER TABLE xml_revisions ADD CONSTRAINT xml_revisions_root_fk

 FOREIGN KEY (rootnodeid) REFERENCES xml_nodes_revisions(nodeid);

/**

 * Delete the records from xml_index table which point to old revisions in xml_index

 * This is possible for documents for which the indexing thread failed during UPDATE

 */

DELETE FROM xml_index WHERE nodeid IN (SELECT nodeid FROM xml_nodes_revisions);

/**

 * Delete the records from xml_nodes which were transfered to xml_nodes_revisions

 */

ALTER TABLE xml_nodes DROP CONSTRAINT xml_nodes_pk CASCADE;

/** rename xml_nodes to xml_nodes_2 */

ALTER TABLE xml_nodes RENAME TO xml_nodes_2;

/** Create a new xml_nodes table */

CREATE TABLE xml_nodes (

        nodeid INT8 default nextval('xml_nodes_id_seq'),

                                        -- the unique node id (pk)

        nodeindex INT8,         -- order of nodes within parent

        nodetype VARCHAR(20),   -- type (DOCUMENT, COMMENT, PI,

                                -- ELEMENT, ATTRIBUTE, TEXT)

        nodename VARCHAR(250),  -- the name of an element or attribute

        nodeprefix VARCHAR(50), -- the namespace prefix of the node

        nodedata VARCHAR(4000), -- the data for this node (e.g.,

                                -- for TEXT it is the content)

        parentnodeid INT8,      -- index of the parent of this node

        rootnodeid INT8,        -- index of the root node of this tree

        docid VARCHAR(250),     -- index to the document id

        date_created DATE,

        date_updated DATE,

        nodedatanumerical FLOAT8, -- the data for this node if

                                  -- if it is a number

   CONSTRAINT xml_nodes_pk PRIMARY KEY (nodeid),

   CONSTRAINT xml_nodes_root_fk

                FOREIGN KEY (rootnodeid) REFERENCES xml_nodes,

   CONSTRAINT xml_nodes_parent_fk

                FOREIGN KEY (parentnodeid) REFERENCES xml_nodes

);

/** copy data from xml_nodes_2 to xml_nodes */

INSERT INTO xml_nodes (nodeid, nodeindex, nodetype, nodename,

nodeprefix, nodedata, parentnodeid, rootnodeid, docid,

date_created, date_updated, nodedatanumerical) SELECT n.nodeid,

n.nodeindex, n.nodetype, n.nodename, n.nodeprefix, n.nodedata,

n.parentnodeid, n.rootnodeid, n.docid, n.date_created,

n.date_updated, n.nodedatanumerical FROM xml_nodes_2 n

LEFT JOIN xml_nodes_revisions r ON n.rootnodeid = r.rootnodeid

WHERE r.rootnodeid is NULL;

/** Drop old indexes **/

DROP INDEX xml_nodes_idx1;

DROP INDEX xml_nodes_idx2;

DROP INDEX xml_nodes_idx3;

/** Create new indexes **/

CREATE INDEX xml_nodes_idx1 ON xml_nodes (rootnodeid);

CREATE INDEX xml_nodes_idx2 ON xml_nodes (parentnodeid);

CREATE INDEX xml_nodes_idx3 ON xml_nodes (nodename);

/** Add constaints which were deleted before moving xml_nodes to xml_nodes_2 */

ALTER TABLE xml_documents ADD CONSTRAINT xml_documents_root_fk FOREIGN KEY (rootnodeid) REFERENCES xml_nodes;

ALTER TABLE xml_index ADD CONSTRAINT xml_index_nodeid_fk FOREIGN KEY (nodeid) REFERENCES xml_nodes;

/** Drop xml_nodes_2 table */

DROP TABLE xml_nodes_2;

/** done */