Morpho: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362002-03-25T20:19:06ZEcoinformatics Redmine
Redmine Bug #448 (Resolved): FileSystemDataStore class not configured for binary fileshttps://projects.ecoinformatics.org/ecoinfo/issues/4482002-03-25T20:19:06ZDan Higginshiggins@nceas.ucsb.edu
<p>currently, the FileSystemDataStore class is set up to work with 'Reader' object;<br />i.e. character streams. This causes problems for binary data files like jpeg or<br />gif images (corrupts the data). Need to revise to handle arbitrary file. (i.e.<br />streams)</p> Bug #431 (Resolved): upload method bugshttps://projects.ecoinformatics.org/ecoinfo/issues/4312002-02-15T04:28:27ZDan Higginshiggins@nceas.ucsb.edu
<p>The upload method in DataPackage class calls the method incrementPackageIds.<br />This method puts the metadata files into strings which is problematic for very<br />large packages. <br />Also, data and metadata are treated identically which causes a problem when<br />attempts are made to put ids into data file. <br />Also, upload attempts to see if a file is data by checking whether or not it is<br />an xml file. This will cause problems if XML is ever used for data.<br />Should add method to check if file is a data file (using triples).</p> Bug #426 (Resolved): data package displays wrong infohttps://projects.ecoinformatics.org/ecoinfo/issues/4262002-02-14T18:22:29ZMatt Jonesjones@nceas.ucsb.edu
<p>When a data package is opened in the Data Package Editor, incorect information<br />is displayed for some of the originators. In particular, metadata documents<br />with originators that have only an "organizationName" field (ie, no<br />individualName) incorrectly display the individualName and address and other<br />fields from the previous originator. It appears that a data structure is not<br />being initialized when looping through the originators, so originator fields<br />from previous originators are retained when displaying an originator that did<br />not have that field.</p>
<p>An example of the problem can be seen by searching for and viewing the document<br />'nrs.3.2'.</p> Bug #424 (Resolved): Memory Problems with Big DataPackageshttps://projects.ecoinformatics.org/ecoinfo/issues/4242002-02-13T21:46:41ZDan Higginshiggins@nceas.ucsb.edu
<p>There have been several cases were the JVM has run out of memory when users<br />create datapackages with either very large datasets or many different datasets<br />in the same package.</p>
<p>Need to investigate why all available memory is being used. Solution may be to<br />simply increase the memory requested by Java at startup (default=64M) so that<br />the problem does not occur on machines that have more memory.</p> Bug #423 (Resolved): Change Default to Use TextImport Wizardhttps://projects.ecoinformatics.org/ecoinfo/issues/4232002-02-13T21:42:40ZDan Higginshiggins@nceas.ucsb.edu
<p>requested by REOT group</p>
<p>Currently the DataPackage Wizard has the default "Manually enter data file<br />descriptions". Automatic option almost always used by REOT.</p> Bug #409 (Resolved): package export interface not intuitivehttps://projects.ecoinformatics.org/ecoinfo/issues/4092002-02-02T01:18:07ZMatt Jonesjones@nceas.ucsb.edu
<p>When exporting data from Morpho, the directory selection interface is confusing.<br /> When the file chooser appears, it expects you to single-click on the name of a<br />directory. Howver, most users would generally navigate to inside the directory<br />in which they want the export placed. Also, the label asks for a "File name",<br />when in fact you are selecting a "Directory" or "Folder" name.</p>
<p>Proposed solution: 1) Change the label to "Folder name", 2) allow the user to<br />either select the folder directly (from the parent) or to enter the folder and<br />select nothing. If their is no folder name selected when the user hits the<br />button, then morpho should select the current directory that the use ris in in<br />the file chooser.</p>
<p>Here's an example, given the that folders /a/b exist:</p>
<p>If user wants to save in b, he can either enter folder a and click once on b<br />then hit Save, or enter folder b and hit save. They would both put the data<br />export in folder b.</p> Bug #402 (Resolved): can't update data files in current Morpho UIhttps://projects.ecoinformatics.org/ecoinfo/issues/4022002-01-23T16:50:05ZMatt Jonesjones@nceas.ucsb.edu
<p>Joel Gramling reports:<br />Additionally, I haven't figured out if you can add more data to a table once you<br />have already established the descriptions or if you have to reload updated<br />datasets as new ones.</p>
<p>This is indeed a problem. Right now you can add a new data table (with<br />metadata), and you can associate a data table with an existing set of metadata,<br />but there is no way to change an existing table. Need to be able to change the<br />data file associated with the data set (which creates a new revision, but<br />doesn't delete the old!). Sometimes this will require a change in the metadata<br />as well (ie, to update coverage info), while other times no change in metadata<br />will be needed other than to associate the new entity & file.</p> Bug #397 (Resolved): editor resizes very slowlyhttps://projects.ecoinformatics.org/ecoinfo/issues/3972002-01-11T19:45:37ZChad Berkleyberkley@nceas.ucsb.edu
<p>If you resize the editor screen, it takes a very long time to redraw. It seems<br />like it is doing the entire dtd parse over again. I don't know if that is<br />really the case but the amount of time it takes to resize is roughly<br />proportional to the time it originally takes to open. it would be nice if you<br />could quickly resize the window to meet your needs.</p> Bug #392 (Resolved): when upload error occurs metacat and local copies can divergehttps://projects.ecoinformatics.org/ecoinfo/issues/3922002-01-11T19:14:23ZChad Berkleyberkley@nceas.ucsb.edu
<p>when changing a file that is both on metacat and local, if a metacat upload<br />error occurs because of a problem with the document (such as a missing required<br />tag) the local copy is still saved, even though it is invalid but the metacat<br />copy is not saved, causing the two copies to diverge. morpho then only shows<br />the newest revision which is the local (and now invalid) one.</p> Bug #376 (Resolved): Allow the user to enter code definitionshttps://projects.ecoinformatics.org/ecoinfo/issues/3762001-12-18T01:16:15ZDan Higginshiggins@nceas.ucsb.edu
<p>The code definitions in enumeratedDomain are blank, empty elements. The<br />wizard should prompt the user to defineeach code or provide a source if they<br />choose to include the enumerated domain in the output. In no case should empty<br />elements be output.<br />A fix will require a new input interface.</p> Bug #351 (Resolved): access control for added data&metadatahttps://projects.ecoinformatics.org/ecoinfo/issues/3512001-11-30T17:10:39ZDan Higginshiggins@nceas.ucsb.edu
<p>When additional data and associated metadata is added to a package,<br />access-contol information for the newly added documents is not also added</p> Bug #312 (Resolved): layout of package wizard needs workhttps://projects.ecoinformatics.org/ecoinfo/issues/3122001-10-30T18:38:40ZChad Berkleyberkley@nceas.ucsb.edu
<p>The layout of the package wizard needs to be improved now that the text import wizard is integrated into the flow of the wizard. The text import part of the wizard should be made to look like the rest of the wizard and the buttons that are needed for the stand alone version should be removed.</p> Bug #310 (Resolved): adding a description file throws and addDataFile exceptionhttps://projects.ecoinformatics.org/ecoinfo/issues/3102001-10-26T17:39:47ZChad Berkleyberkley@nceas.ucsb.edu
<p>When trying to add an existing description through the add new wizard, morpho throws an exception saying that it cannot add a new data file. The wrong method (MetacatDataStore.newDataFile) is called instead of MetacatDataStore.newFile.</p> Bug #308 (Resolved): Problem integrating existing profile datahttps://projects.ecoinformatics.org/ecoinfo/issues/3082001-10-25T16:21:53ZDan Higginshiggins@nceas.ucsb.edu
<p>With the new routines for creating a profile (ie those tha use the full ldap<br />name), if one checks out a new version of Morpho and starts building a new<br />profile but keeps an old profile directory, there is an error that kills Morpho<br />when one tries to log in. (also, no ldap 'name' appears above the password box).</p>
<p>The problem only occurs when trying to use an existing profile data</p> Bug #288 (Resolved): Need activity indication when awaiting response from Metacathttps://projects.ecoinformatics.org/ecoinfo/issues/2882001-10-02T16:07:59ZDan Higginshiggins@nceas.ucsb.edu
<p>Some Metacat requests take noticable amounts of time. There needs to be some<br />indication of activity while waiting for Metacat response for all cases where<br />Metacat is called.</p>