Morpho: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362005-09-28T17:33:56ZEcoinformatics Redmine
Redmine Bug #2208 (Resolved): tree editor checks spatialVector after editing any field in data packages c...https://projects.ecoinformatics.org/ecoinfo/issues/22082005-09-28T17:33:56ZWill Tyburczytyburczy@nceas.ucsb.edu
<p>When editing a package in tree editor, if a user clicks "show all", edits any<br />field, and then either clicks "trim", selects another field, or clicks anywhere<br />in the tree, the "spatialVector" element is erroneously checked. This only<br />happens in data packages which contain dataTable elements.</p> Bug #2162 (Resolved): eml versions and dateTimeDomain requirementshttps://projects.ecoinformatics.org/ecoinfo/issues/21622005-07-18T21:34:46ZCallie Bowdishbowdish@nceas.ucsb.edu
<p>following error generated: cvc-complex-type.2.3: Element 'dateTimeDomain' must<br />have no character [children], because the types content type is element-only.</p>
<p>Conversation regarding the error having to do with two differing eml-versions<br />problem comes when someone adds a datatable to eml-2.0.0 - doesnt specify the<br />bounds and then opens the document in tree editor<br /><sid> and the tree editor enforces eml-2.0.0<br /><sid> and hence looks for the bound info<br /><sid> which is what happened in Callie's case<br /><sid> Mr. EML-2.0.1 agrees with you - whereas Mr. EML-2.0.0 doesnt<br /><vero> well since 2.0.1 is what we're using now...<br /><sid> Callie - add these to the list of things which will hopefully be fixed in<br />Morpho1.6.0 R C2</p>
<p>regarding the dateTimeDomain attribute and inside the bound tags you shud have<br />minimum and maximum</p>
<p><sid> that error was probably that dateTimeDoamin cant be trimmed because it is<br />required<br /><vero> it's not required in the NDPW<br /><vero> is it?</p> Bug #2131 (Resolved): Geographic coverage screen in dpw not saving coordinateshttps://projects.ecoinformatics.org/ecoinfo/issues/21312005-06-17T22:54:59ZSaurabh Gargsgarg@nceas.ucsb.edu
<p>Following bugs were reported by Veronique in Geographic Coverage screen</p>
<p>1. Morpho accepted the coordinates i entered in the NDPW, but when i <br />clicked "edit" in the NDPW to edit the coordinates, the coordinates were reset <br />to 45.0 N, 45.0 S, 90.0 W, 90.0 E.</p>
<p>2. i clicked on edit, but then clicked on cancel. the coordinates i had entered <br />were displayed in the NDPW. i finished the NDPW and the dp opened: the <br />coordinates that were displayed were<br /> West: -90.0 degrees<br /> East: 90.0 degrees<br /> North: 45.0 degrees<br /> South: -45.0 degrees, <br />not the coordinates i had entered (even though i clicked on cancel for editing)</p> Bug #2103 (Resolved): Morpho changes the value in geographic coverage...https://projects.ecoinformatics.org/ecoinfo/issues/21032005-06-09T17:31:09ZSaurabh Gargsgarg@nceas.ucsb.edu
<p>Bug reported by Kristin Vanderbilt:</p>
<p>I’m trying to enter a point location for geographic coverage using Morpho. <br />When I type 106.6914 into the longitude field, Morpho changes the number to <br />106.5314. I’ve tried doing this before and have had the same problem. How <br />do I enter coordinates and not have Morpho change what I entered?</p>
<p>Thanks,<br />Kristin</p> Bug #2097 (Resolved): Import Taxon Information from Data Tablehttps://projects.ecoinformatics.org/ecoinfo/issues/20972005-06-01T18:19:54ZVeronique Connollyconnolly@nceas.ucsb.edu
<p>When you import taxonomic information as a data table, the information doesn't<br />get saved in the data package:</p>
<p>I went to "Taxonomic coverage" under the documentation menu, clicked on the<br />"Import Taxon Information from Data table" link, selected a column, chose<br />"species" as the taxon category and clicked OK. The first row of the table<br />under "Enter information about Taxonomic Coverage" had this information:</p>
<p>Rank: Genus; Name: blank (empty cell); Rank: Species; Name: blank (empty cell)</p>
<p>The following rows had the information I imported from the data table. When I<br />clicked on OK and went back to the dp, the taxonomic information I had just<br />imported didn't appear in the Data Package Documentation panel.</p>
<p>Having the first row of the "Enter information about Taxonomic Coverage" table<br />empty seems to be causing this problem because if you manually enter info in<br />this row using the Add button and then import info from a data table, all of the<br />info gets saved and appears in the Data Package Documentation panel.</p> Bug #2096 (Resolved): Not all elements of attribute module displayed in tree editorhttps://projects.ecoinformatics.org/ecoinfo/issues/20962005-05-31T17:15:07ZVeronique Connollyconnolly@nceas.ucsb.edu
<p>Let's say you have a data package that contains a data table which in turn<br />contains several attributes. In the tree editor, when you click “Show all”, nine<br />elements of the attribute module (dataTable/attributeList) appear for the first<br />attribute of the table (attributeName, attributeLabel, attributeDefinition,<br />storageType, measurementScale, missingValueCode, accuracy, coverage, method),<br />but only four elements appear for the other attributes (attributeName,<br />attributeLabel, attributeDefinition, measurementScale). All elements should<br />appear for all attributes.</p>
<p>When there are several tables in the data package, only the first data table<br />displays the nine elements for the first attribute; the other tables display<br />only the four elements mentioned above for all attributes.</p> Bug #2001 (Resolved): Add storage type field to Text Import Wizardhttps://projects.ecoinformatics.org/ecoinfo/issues/20012005-03-02T23:57:18ZVeronique Connollyconnolly@nceas.ucsb.edu
<p>In the Text Import Wizard, we need to add two new fields: Storage Type System<br />and Storage type.</p> Bug #1944 (Resolved): Text Import Wizard crash: loosing entered infohttps://projects.ecoinformatics.org/ecoinfo/issues/19442005-02-04T21:47:57ZVeronique Connollyconnolly@nceas.ucsb.edu
<p>When I’m in the Text Import Wizard and I’m done defining all my attributes, I<br />hit “Import”, which brings up the last window of the wizard (this last window is<br />actually called New DataTable Wizard). On that window, if I click the “Back”<br />button, the wizard disappears and I loose all the info that I had entered.</p>
<p>I was able to replicate this bug.</p> Bug #1833 (Resolved): morpho should support eml-2.0.1https://projects.ecoinformatics.org/ecoinfo/issues/18332004-12-15T21:40:07ZMatt Jonesjones@nceas.ucsb.edu
<p>Morpho 1.5.1 produces eml-2.0.0 documents. It also only searches for eml-2.0.0<br />documents and prior. We need to make it easy for morpho to support new versions<br />of eml, especially versions that are backwards compatible with earlier eml<br />versions. This might involve creating a jar download of the EML schemas and<br />stylesheets and a config file telling morpho how to handle crucial aspects of<br />the eml (maybe not needed). If this jar file can be downloaded by morpho then<br />we could upgrade existing morpho installations without the user having to get a<br />new version of the software. At a minimum we need a new release of Morpho that<br />creates and searches both EML2.0.0 and EML 2.0.1 documents.</p> Bug #1799 (Resolved): Losing data tables when using “Export”https://projects.ecoinformatics.org/ecoinfo/issues/17992004-12-02T23:44:17ZVeronique Connollyconnolly@nceas.ucsb.edu
<p>I exported a data package (dp) and when I checked the “data” subdirectory<br />generated from the export, not all the files corresponding to my dp’s data<br />tables (dt) were there.</p>
<p>I had three dt in my dp, and the 2nd one was one that I had created using the<br />“Describe” option (New DataTable Wizard/Describe/Automatic). The dt I was<br />missing after the export was the 3rd one displayed in the dp.</p>
<p>I investigated and created a few dp with varying numbers of dt, always including<br />a dt created with “Describe” (the other dt were created by automatically<br />importing a text file) and making sure the “describe” dt was always followed by<br />at least one dt. After I exported these dp, the dt missing were always the ones<br />that followed the “describe” dt.</p> Bug #1770 (Resolved): Using Revert Tab in Data Table panelhttps://projects.ecoinformatics.org/ecoinfo/issues/17702004-11-18T21:19:59ZVeronique Connollyconnolly@nceas.ucsb.edu
<p>I was working in the Data Table panel of a Data Package, I deleted a Selected<br />Column, and then I did Revert Tab, but it didn’t revert to my original data<br />table. Here is what it did. Initially, I had 6 columns. Let’s say the column<br />names were A, B, C, D, E, F. I deleted column A. After I did Revert Tab, I had<br />5 columns with column headers B, C, D, E, F (in that order) containing data from<br />the original columns A, B, C, D, E, respectively. So, in the end, after doing<br />Revert Tab, I got the data from column A back (the column I had deleted), but<br />the column header A was replaced by column header B (followed by column headers<br />C, D, E, F), and I lost data from column F.</p> Bug #1712 (Resolved): Radio buttons for choice are "all" set as default in Tree Editorhttps://projects.ecoinformatics.org/ecoinfo/issues/17122004-10-08T15:40:33ZMark Servillaservilla@lternet.edu
<p>When creating a new instance document, the Tree Editor sets all radio buttons as<br />the default. If the document is saved without deselecting all but the desired<br />radio button ("schema choice"), all choice elements are saved - which, results<br />in an invalid EML document.</p>
<p>Note that this behavior is not verified for all choice sections within the Tree<br />Editor.</p> Bug #1710 (Resolved): taxonomicClassificationSystem not created correctly from GUIhttps://projects.ecoinformatics.org/ecoinfo/issues/17102004-09-29T22:41:35ZChad Berkleyberkley@nceas.ucsb.edu
<p>the GUI editor for taxonomicClassificationSystem is not providing the required<br />content inside taxonomicClassificationSystem. if you use this part of the<br />document, it will not validate upon submission to metacat.</p> Bug #1622 (Resolved): problems with morpho's eml parserhttps://projects.ecoinformatics.org/ecoinfo/issues/16222004-07-07T18:00:29ZMargaret O'Brienmob@msi.ucsb.edu
<p>A file that is valid according to the eml parser at<br /><a class="external" href="http://knb.ecoinformatics.org/emlparser/index.html">http://knb.ecoinformatics.org/emlparser/index.html</a> failed to pass the morpho<br />parser. Morpho cant tell me what the problem is, only that it cant save to the<br />network due to some bad eml. There were no apparent problems loading the file.<br />Also, the only place that morpho gave any eml error message is when I try to<br />save changes from the editor. There is no indication of a problem from the<br />save->network action, except that the icon in the upper right still says<br />"local", instead of changing to "network". The offending file is available at<br />the url above.</p> Bug #1515 (Resolved): taxon dialog checks input but allows invalid inputhttps://projects.ecoinformatics.org/ecoinfo/issues/15152004-04-19T16:43:11ZChad Berkleyberkley@nceas.ucsb.edu
<p>I pasted the text</p>
<blockquote><blockquote><blockquote><blockquote><blockquote>
</blockquote></blockquote></blockquote></blockquote></blockquote>
<p><<br />&<br />" <br />'</p>
<p>into a taxon name. it told me that was invalid input and that i needed to use<br />only letters or numbers, but then i just left the text there and it let me<br />continue. It probably should stop me from going on with those chars in the field.</p>