Morpho: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362015-03-27T21:56:52ZEcoinformatics Redmine
Redmine Bug #6701 (New): Entity descriptions can't be added outside wizardhttps://projects.ecoinformatics.org/ecoinfo/issues/67012015-03-27T21:56:52ZJessica Couturecouture@nceas.ucsb.edu
<p>I was trying to add entity descriptions after my tables had been imported and found that there is no way to go back and access this. Can this function be added so that this can be edited outside the initial data wizard has been closed?</p> Bug #6700 (New): Pub date fieldhttps://projects.ecoinformatics.org/ecoinfo/issues/67002015-03-27T21:54:54ZJessica Couturecouture@nceas.ucsb.edu
<p>The publication data defaults to the current date and there is no way to manually set this in Morpho. Can we have one added for datasets that had been published in the past?</p> Bug #6112 (New): Use .morpho when we release the morphohttps://projects.ecoinformatics.org/ecoinfo/issues/61122013-10-01T23:53:37ZJing Taotao@nceas.ucsb.edu
<p>Currently the default morpho home is .morpho2. It is great for users to test morpho without change the file structure. But the real release will use .morpho as the default directory.</p> Bug #5902 (Resolved): Replace "Owner" with "Creator" in Morpho interfacehttps://projects.ecoinformatics.org/ecoinfo/issues/59022013-04-10T21:20:59Zben leinfelderleinfelder@nceas.ucsb.edu
<p>Using the word 'Owner' in the Morpho UI was a mistake, and is misleading. We should not have used it in our web display either. In the US, data can not be owned, because neither copyright nor patent law applies to facts. EML does not have an owner field. There is no owner.</p> Bug #5900 (Rejected): There is no a menu item for editing the Access information in the Document ...https://projects.ecoinformatics.org/ecoinfo/issues/59002013-04-08T18:40:55ZJing Taotao@nceas.ucsb.edu
<p>There was a menu item for editing the access information in the Document menu. But now I can't find it. So how can i edit the access rules for the data package right now?</p> Bug #5898 (Resolved): Some issue in the RelicationPolicyPagehttps://projects.ecoinformatics.org/ecoinfo/issues/58982013-03-26T23:54:34ZJing Taotao@nceas.ucsb.edu
<p>Hi, ben:</p>
<p>When i finished the new data package wizard and click "add a new entity link", i got this error:<br /> [java] Exception in thread "AWT-EventQueue-0" java.lang.NumberFormatException: For input string: "" <br /> [java] at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)<br /> [java] at java.lang.Integer.parseInt(Integer.java:504)<br /> [java] at java.lang.Integer.valueOf(Integer.java:582)<br /> [java] at edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ReplicationPolicyPage.getReplicationPolicy(ReplicationPolicyPage.java:229)<br /> [java] at edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ReplicationPolicyPage.getPageData(ReplicationPolicyPage.java:336)<br /> [java] at edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ReplicationPolicyPage.getPageData(ReplicationPolicyPage.java:319)<br /> [java] at edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame.addPageDataToResultsMap(WizardContainerFrame.java:1961)<br /> [java] at edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame.collectDataFromPages(WizardContainerFrame.java:1058)<br /> [java] at edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame.finishAction(WizardContainerFrame.java:906)<br /> [java] at edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary$1.execute(Summary.java:248)<br /> [java] at edu.ucsb.nceas.morpho.util.GUIAction.actionPerformed(GUIAction.java:410)<br /> [java] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)<br /> [java] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)<br /> [java] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)<br /> [java] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)<br /> [java] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)<br /> [java] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)<br /> [java] at java.awt.Component.processMouseEvent(Component.java:6505)<br /> [java] at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)<br /> [java] at java.awt.Component.processEvent(Component.java:6270)<br /> [java] at java.awt.Container.processEvent(Container.java:2229)<br /> [java] at java.awt.Component.dispatchEventImpl(Component.java:4861)<br /> [java] at java.awt.Container.dispatchEventImpl(Container.java:2287)<br /> [java] at java.awt.Component.dispatchEvent(Component.java:4687)<br /> [java] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)<br /> [java] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)<br /> [java] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)<br /> [java] at java.awt.Container.dispatchEventImpl(Container.java:2273)<br /> [java] at java.awt.Window.dispatchEventImpl(Window.java:2719)<br /> [java] at java.awt.Component.dispatchEvent(Component.java:4687)<br /> [java] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:729)<br /> [java] at java.awt.EventQueue.access$200(EventQueue.java:103)<br /> [java] at java.awt.EventQueue$3.run(EventQueue.java:688)<br /> [java] at java.awt.EventQueue$3.run(EventQueue.java:686)<br /> [java] at java.security.AccessController.doPrivileged(Native Method)<br /> [java] at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)<br /> [java] at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)<br /> [java] at java.awt.EventQueue$4.run(EventQueue.java:702)<br /> [java] at java.awt.EventQueue$4.run(EventQueue.java:700)<br /> [java] at java.security.AccessController.doPrivileged(Native Method)<br /> [java] at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)<br /> [java] at java.awt.EventQueue.dispatchEvent(EventQueue.java:699)<br /> [java] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)<br /> [java] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)<br /> [java] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)<br /> [java] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)<br /> [java] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)<br /> [java] at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)</p> Bug #5889 (Resolved): Update documentation and installers to require Java 7https://projects.ecoinformatics.org/ecoinfo/issues/58892013-03-09T00:01:43Zben leinfelderleinfelder@nceas.ucsb.edu
<p>ECP is using OpenSAML 3.0 that is now requiring Java 7.</p> Bug #5888 (Resolved): Couldn't log in as a NCEAS account in Morphohttps://projects.ecoinformatics.org/ecoinfo/issues/58882013-03-08T19:13:58ZJing Taotao@nceas.ucsb.edu
<p>When I tried to log in the DataONE network as a NCEAS account, i got this error:<br /> [java] Could not authenticate: org/opensaml/core/config/InitializationException : Unsupported major.minor version 51.0<br /> [java] java.lang.UnsupportedClassVersionError: org/opensaml/core/config/InitializationException : Unsupported major.minor version 51.0<br /> [java] at java.lang.ClassLoader.defineClass1(Native Method)<br /> [java] at java.lang.ClassLoader.defineClassCond(ClassLoader.java:631)<br /> [java] at java.lang.ClassLoader.defineClass(ClassLoader.java:615)<br /> [java] at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)<br /> [java] at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)<br /> [java] at java.net.URLClassLoader.access$000(URLClassLoader.java:58)<br /> [java] at java.net.URLClassLoader$1.run(URLClassLoader.java:197)<br /> [java] at java.security.AccessController.doPrivileged(Native Method)<br /> [java] at java.net.URLClassLoader.findClass(URLClassLoader.java:190)<br /> [java] at java.lang.ClassLoader.loadClass(ClassLoader.java:306)<br /> [java] at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)<br /> [java] at java.lang.ClassLoader.loadClass(ClassLoader.java:247)<br /> [java] at edu.ucsb.nceas.morpho.dataone.EcpAuthentication.authenticate(EcpAuthentication.java:142)<br /> [java] at edu.ucsb.nceas.morpho.framework.LoginCommand.execute(LoginCommand.java:80)<br /> [java] at edu.ucsb.nceas.morpho.framework.ConnectionFrame$1.doInBackground(ConnectionFrame.java:367)<br /> [java] at javax.swing.SwingWorker$1.call(SwingWorker.java:277)<br /> [java] at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)<br /> [java] at java.util.concurrent.FutureTask.run(FutureTask.java:138)<br /> [java] at javax.swing.SwingWorker.run(SwingWorker.java:316)<br /> [java] at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)<br /> [java] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)<br /> [java] at java.lang.Thread.run(Thread.java:680)<br /> [java] LoginCommand: Login failed.<br /> [java] Login failed.<br /> [java] Please check the Caps Lock key and try again.</p> Bug #5887 (New): Handle the query result set which contains the revision chains of documentshttps://projects.ecoinformatics.org/ecoinfo/issues/58872013-03-07T23:48:28ZJing Taotao@nceas.ucsb.edu
<p>Morpho network query now experiences a performance issue because the merge of the network and local search results.</p>
<p>During the merge, morpho needs to make lots of calls the DataONE MN to get the revision chains.</p>
<p>The proposed solution is to add the revision chain for each eml document to the result set. This can avoid lots of network traffic.</p>
<p>So morpho needs to handle the new result set.</p> Bug #5886 (Resolved): Rework AccessPolicy and ReplicationPolicy editinghttps://projects.ecoinformatics.org/ecoinfo/issues/58862013-03-05T01:04:47Zben leinfelderleinfelder@nceas.ucsb.edu
<p>1. Move "Edit XXX Policy..." from the Documentation menu into File menu.<br />2. Add "Inherit from package" checkbox to the main edit page.<br />2a. Check the box if the data files all share the same access/replication policies as for the EML object<br />2b. If it is unchecked (policies differ) then display info message when it is checked my the user ("Existing Policy for the data object[s] will be overridden by changes made here")<br />3. Make the "Success" pop up message more pleasing (right now it looks like an error/warning box because it reuses the same mechanism for displaying warnings to the user).</p> Bug #5881 (Resolved): How can we change the access policy for the resource map documenthttps://projects.ecoinformatics.org/ecoinfo/issues/58812013-02-23T00:56:47ZJing Taotao@nceas.ucsb.edu
<p>When we create a data package with a data object by the new data package wizard and entity wizard, a resource map document will be generated as well.</p>
<p>Morpho has explicit ways to change the the access policy for the metadata and data objects. There is no explicit ways to modify the access policy for the resource map document. I guess we has implicit way for the resource map - it will be modified when you modify the access rules for the metadata object (eml document). However, this doesn't work. After i successfully modified the metadata's access policy, the resource map doesn't change.</p> Bug #5854 (Resolved): Include Replication Policy screen in the NDP wizard sequencehttps://projects.ecoinformatics.org/ecoinfo/issues/58542013-02-06T06:46:28Zben leinfelderleinfelder@nceas.ucsb.edu
<p>When I was updating the user guide, I added the Replication Policy instructions to the new datapackage wizard section even though it is not currently part of that 15 (!) step workflow. I think it should be considered for inclusion in the wizard since it is one of the main selling points of DataONE and having it in the wizard would highlight the importance of a solid replication strategy.</p>
<p>If we do not include it in the wizard sequence, then we might consider using a reasonable default (allow replication at 2 copies?) but this could be considered heavy handed and not appreciated by sensitive users.</p> Bug #5805 (In Progress): Local and Network revisions show at same time in search resultshttps://projects.ecoinformatics.org/ecoinfo/issues/58052013-01-24T00:31:32Zben leinfelderleinfelder@nceas.ucsb.edu
<p>I can see an older local version of a package in the search results along with the newer network version by doing the following steps:<br />1. Save new package to Local+Network<br />2. Edit title<br />3. Save only to Network<br />4. Launch the open dialog and see the two revisions -- the newer network one and the older local one.</p>
<p>This is somewhat accurate in that it captures exactly what versions are store where, but I do not think we want this behavior. Only the network (newest) revision should show. This may just be a search result merge issue.</p> Bug #5736 (New): Morpho DataONE refactor - trackerhttps://projects.ecoinformatics.org/ecoinfo/issues/57362012-11-19T23:33:24Zben leinfelderleinfelder@nceas.ucsb.eduBug #2852 (In Progress): Unable to delete a table that only includes the data file documentaionhttps://projects.ecoinformatics.org/ecoinfo/issues/28522007-05-24T18:49:32ZCallie Bowdishbowdish@nceas.ucsb.edu
<p>The option to delete the curreent data table is not avaialbe when only the attribues are listed. To test this Import a table , choose DESCRIBE - include only the data file documentation (but not the data file itself) in the package. The data menu has no options for deleting the table when only the attribures are listed. The edit feature does not work on this either I got a trim error.</p>