SEEK: Issueshttps://projects.ecoinformatics.org/ecoinfo/https://projects.ecoinformatics.org/ecoinfo/ecoinfo/favicon.ico?14691340362006-03-20T22:21:43ZEcoinformatics Redmine
Redmine Bug #2385 (In Progress): Querying with OR Conditions to DiGIR node for darwincore datahttps://projects.ecoinformatics.org/ecoinfo/issues/23852006-03-20T22:21:43ZDavid Sledgedsledge@lternet.edu
<p>If I query the DiGIR node with the following condition I get records back:</p>
<p><condition operator="LIKE" concept="ScientificName">trout</condition></p>
<p>But if I try the following OR statement, I don't get any records back:</p>
<p><OR><br /> <condition operator="LIKE" concept="Kingdom">trout</condition><br /> <condition operator="LIKE" concept="Phylum">trout</condition><br /> <condition operator="LIKE" concept="Class">trout</condition><br /> <condition operator="LIKE" concept="Order">trout</condition><br /> <condition operator="LIKE" concept="Genus">trout</condition><br /> <condition operator="LIKE" concept="SpecificEpithet">trout</condition><br /> <condition operator="LIKE" concept="InfraspecificEpithet">trout</condition><br /> <condition operator="LIKE" concept="ScientificName">trout</condition><br /> <condition operator="LIKE" concept="HigherTaxon">trout</condition><br /></OR></p> Bug #1596 (New): data integration of Niche Modeling in Ecogridhttps://projects.ecoinformatics.org/ecoinfo/issues/15962004-06-08T17:56:51ZBing Zhubzhu@sdsc.edu
<p>The goal of the task is to use existing data model within Ecogrid system such <br />as SRB to upload (bulkload) image files of Niche Modeling led by David <br />Stockwell into an Ecogrid data source, initially targeting at SRB system. <br />Metadata for image files is also injested into a backend database for the <br />chosen data management system such as MCAT in SRB.</p>
<p>With data stored in a Ecogrid data source, David can build Kepler workflow <br />using our Ecogrid calls to query and retrieve data from Ecogrid in the future.</p>
<p>Currently uploading data into SRB uses native SRB commands. This approach will <br />be replaced by Ecogrid's PUT call after it is implemented.</p> Bug #1448 (New): Refactor ProxyFactory to create TOSProxyDispatcher or LocalCacheTOSProxyhttps://projects.ecoinformatics.org/ecoinfo/issues/14482004-04-05T19:52:16ZAimee Stewartastewart@ku.edu
<p>TOSProxyDispatcher will query multiple proxies, both distributed and local;<br />LocalCacheTOSProxy will be optimized for querying all hierarchy providers in the<br />local cache. This will be postponed to maximize the functionality by e-science,<br />and because distributed proxies will not be available immediately.</p> Bug #1447 (Resolved): Refactor LocalDBTOSProxy to abstract DB accesshttps://projects.ecoinformatics.org/ecoinfo/issues/14472004-04-05T19:47:10ZAimee Stewartastewart@ku.eduBug #1444 (Resolved): Implement simple ProxyFactory to create LocalDBTOSProxy onlyhttps://projects.ecoinformatics.org/ecoinfo/issues/14442004-04-05T18:18:04ZAimee Stewartastewart@ku.eduBug #1403 (New): Add test database creation to build processhttps://projects.ecoinformatics.org/ecoinfo/issues/14032004-03-26T23:11:40ZAimee Stewartastewart@ku.eduBug #1402 (In Progress): Create small test database with hickory and mosseshttps://projects.ecoinformatics.org/ecoinfo/issues/14022004-03-26T23:11:18ZAimee Stewartastewart@ku.eduBug #1398 (Resolved): Send status report on implementation plan for e-Science meetinghttps://projects.ecoinformatics.org/ecoinfo/issues/13982004-03-26T16:53:57ZAimee Stewartastewart@ku.eduBug #1397 (In Progress): Implement highest priority interfaces (first 7 of following list of 9)https://projects.ecoinformatics.org/ecoinfo/issues/13972004-03-26T16:48:57ZAimee Stewartastewart@ku.edu
<p>1. getConcept - takes a GUID and returns a concept<br />2. findConcept - takes a partially filled out Taxonomic Exchange Schema (TES)<br />and returns a list of concepts weighted according to the chosen similarity<br />algorithm.<br />3. compareConcept - takes 2 GUIDs and returns a measure of similarity according<br />to the chosen similarity algorithm.<br />4. enterProviderData - allows input of concepts and relationships from a<br />particular provider into the Taxon Cache.<br />5. editRelationship - add, delete or edit a relationship between concepts for a<br />particular provider.<br />6. findRelatedConcept - find parents or children at a certain distance from a<br />given concept (grandparents, grandchildren, etc) according to a particular provider.<br />7. measureRelationship - takes 2 GUIDs and returns a measure of the relationship<br />according to the chosen relate algorithm.<br />8. compareConceptRelationships - takes a 2 concepts and 2 providers and compares<br />their positions within their respective trees according to the chosen relate<br />algorithm.<br />9. compareConceptLists - more discussion is needed on the requirements for this<br />method. Previously implemented methods should form the basis for the<br />implementation.</p> Bug #1379 (Resolved): solidify return format from public interfaces for Taxonomic Exchange Schema...https://projects.ecoinformatics.org/ecoinfo/issues/13792004-03-23T22:00:57ZAimee Stewartastewart@ku.eduBug #1336 (New): create ecology specific pipelineshttps://projects.ecoinformatics.org/ecoinfo/issues/13362004-02-09T19:07:03ZChad Berkleyberkley@nceas.ucsb.edu
<p>we need to build more ecology specific pipelines for kepler. these should be<br />the general text book type models like the lotka-volterra one that we build in<br />SEV. Rich and Mark had a long list of ones that they wanted to<br />implement...could you guys please add a list here in bugzilla?</p> Bug #1258 (In Progress): store, query, and access ontologies in ecogridhttps://projects.ecoinformatics.org/ecoinfo/issues/12582004-01-15T20:43:45ZMatt Jonesjones@nceas.ucsb.edu
<p>We discussed the ontology storage feature for the ecogrid system at the last<br />meeting in Santa Barbara (Oct 2003). See the summary from that meeting for<br />details, but highlights are:</p>
<p>1) Store ontologies as OWL XML docs<br />2) Query needs<br /> 2a) string match to find terms and definitions<br /> 2b) graphic based ontology querying (ie, navigate ontology)<br /> 2c) support reasoning based query operators (eg, subsumption)</p>
<p>Suggested at the meeting that we implement a grid service version of the SWI<br />package for querying.</p> Bug #1162 (In Progress): implement level III ecogrid methods for Xylopiahttps://projects.ecoinformatics.org/ecoinfo/issues/11622003-09-26T21:34:09ZMatt Jonesjones@nceas.ucsb.edu
<p>When the level III methods are well specified and somewhat stable, we need to<br />implement them for Xylopia. Peter volunteered Amy to do this.</p> Bug #1161 (Resolved): create wsdl for ecogrid level III interfaceshttps://projects.ecoinformatics.org/ecoinfo/issues/11612003-09-26T21:22:31ZMatt Jonesjones@nceas.ucsb.edu
<p>Need to build and checkin OGSA stubs in java for the Level III query methods. <br />This is still experimental stuff, thus lower priority. Methods are defined in<br />bug 1158 as well as the notes from the Seattle meeting in cvs.</p> Bug #1062 (Resolved): install and evaluate OSGA DAIhttps://projects.ecoinformatics.org/ecoinfo/issues/10622003-05-19T20:10:48ZMatt Jonesjones@nceas.ucsb.edu
<p>Need to look into the use of OSGA DAI as a possible distributed data service for<br />the EcoGrid. It may have already provided many of the features we need in a<br />data service in an OGSA compliant package.</p>
<p>Who: Bing</p>