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From 02/08/2010 to 03/09/2010

03/04/2010

03:26 PM Bug #4856: Ontology Browser as a non-modal palette
IRC conversation:
----
bowers: what if instead of or in addition to drag and drop, it worked more palette like
[12:27...
ben leinfelder
10:39 AM Bug #4854: Integrate Context Annotation tab with Column Annotation tab
Started by making the CustomList have a madlib string representation of the context entry. The template is such:
"The...
ben leinfelder
10:00 AM Bug #4853: Save as Duplicate... should copy the Annotation too
Or should it?
It could also be an option since I can see wanting to get rid of the annotation (starting fresh) like i...
ben leinfelder

03/01/2010

02:36 PM Bug #4856: Ontology Browser as a non-modal palette
Use Proposals:
------------
1. Drag and Drop
-class can be selected from the tree and dragged to a:
-madlib field ...
ben leinfelder
09:42 AM Bug #4856 (New): Ontology Browser as a non-modal palette
From Shawn:
---
5. I still think we should display the current drop-down term
selection as a panel in the right-ha...
ben leinfelder
09:39 AM Bug #4855 (New): Reorder the Full Annotation rows to match madlib order
From Shawn:
---
2. The full annotation should be more closely aligned to the terms
used in the madlib. So, e.g., I...
ben leinfelder
09:37 AM Bug #4854 (New): Integrate Context Annotation tab with Column Annotation tab
Make one compete madlib for the column annotation.
---
1. I'd like to see the context annotation tab be folded int...
ben leinfelder
09:11 AM Bug #4853 (Resolved): Save as Duplicate... should copy the Annotation too
If you duplicate an EML package, the Annotation should be duplicated as well ben leinfelder

02/25/2010

01:32 PM Bug #4844 (Resolved): Dynamically resize Ontology selection fields
This used to work when I was using a label to render the ontology selection widget, but the text field does not resiz... ben leinfelder
12:03 PM Bug #4824: Ontology Browser - double click does not always select and close the popup
while working on this, I noticed that if you tab between windows (cmd+tab on Mac) you'd trigger the pop up to be show... ben leinfelder
11:34 AM Bug #4824: Ontology Browser - double click does not always select and close the popup
...because the tree is recreated during the search (typing in the text field), the double click listener was lost.
It...
ben leinfelder
11:13 AM Bug #4824: Ontology Browser - double click does not always select and close the popup
This seems to be happening when I type in the text field to initiate a search ben leinfelder
11:09 AM Bug #4819: "Column Annotation" view duplicates mappings
I should have been editing this bug instead of the bug about overwriting annotations. They were caused by the same is... ben leinfelder
10:51 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
-added logging
-use member variable for annotation page reference (used in event handling methods)
-reset the annotat...
ben leinfelder
09:57 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
and it's back ben leinfelder
09:42 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
this is working now. I've restricted how you can use the AnnotationPage's methods so as to avoid duplicating mappings... ben leinfelder

02/24/2010

03:16 PM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
here's my thinking:
-there should be a [rather lightweight] class that holds the tabbed pane
-this AnnotationTabPane ...
ben leinfelder
02:08 PM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
Alternatively, create StateChangeEvents that reflect the change regardless of where it happens, so that updates to th... Matt Jones
02:02 PM Bug #4836 (Resolved): Column Annotation page overwrites changes made in Full Annotation
Because of how I've set up the listener on the madlib tab, if you make a change directly to the annotation table, the... ben leinfelder
01:38 PM Bug #4833: Direct Annotation (table) is adding incomplete mappings
I introduced this bug when consolidation the code that looks up the current annotation and attribute. simple as omitt... ben leinfelder
01:27 PM Bug #4833 (Resolved): Direct Annotation (table) is adding incomplete mappings
When I double click a cell in the annotation table to select a class I end up completely hosing the annotation and th... ben leinfelder
01:16 PM Bug #4823: Save Annotations... menu option improvements
these are committed. 'course we have to figure out a better "whole package" save eventually. ben leinfelder
11:15 AM Bug #4822: Include "Annotation Context" tab for editing the contexts
done ben leinfelder
10:54 AM Bug #4822: Include "Annotation Context" tab for editing the contexts
Now using the Context tab to add/edit/remove the entries.
Now I just need to remove the Add/Remove Context... menu it...
ben leinfelder

02/23/2010

03:28 PM Bug #4822: Include "Annotation Context" tab for editing the contexts
the sizing issue has been dealt with. ben leinfelder
02:23 PM Bug #4822: Include "Annotation Context" tab for editing the contexts
added a new page that uses one of Morpho's CustomList widgets to make the modifications.
so far:
-the page is a third...
ben leinfelder
08:21 AM Bug #4822 (Resolved): Include "Annotation Context" tab for editing the contexts
Currently you can only add a new context relationship or remove an existing one. There is no dedicated UI for display... ben leinfelder
10:30 AM Bug #4825: Add Context is not saving the Relationship
now getting the class from the widget, whereas previously the whole class URI was in the text field ben leinfelder
09:51 AM Bug #4825 (Resolved): Add Context is not saving the Relationship
When you add a Context to the currently selected Observation, the context is saved in the XML, but the Relationship i... ben leinfelder
08:27 AM Bug #4824 (Resolved): Ontology Browser - double click does not always select and close the popup
I've intermittently found that double clicking the tree does not actually close the popup - instead it behaves like t... ben leinfelder
08:22 AM Bug #4823 (Resolved): Save Annotations... menu option improvements
1. There should be no ellipsis since there is not additional UI after invoking the option. (There should be when we s... ben leinfelder
05:23 PM Bug #4821: Changes in madlib view do not immediately show in table view
When the tab is changed, a column selection event is fired which triggers the annotation to be saved as it currently ... ben leinfelder
05:01 PM Bug #4821 (Resolved): Changes in madlib view do not immediately show in table view
If you enter an annotation in the "Column Annotation" tab then switch to the "Full Annotation" view you will not see ... ben leinfelder
04:45 PM Bug #4819: "Column Annotation" view duplicates mappings
I encountered another case where the values from one annotation were populating and saving in another column's.
I cha...
ben leinfelder

02/22/2010

03:27 PM Bug #4819: "Column Annotation" view duplicates mappings
Now "resetting" the madlib annotation tab so that the old values are not saved as a new mapping for the next selected... ben leinfelder
11:57 AM Bug #4819 (Resolved): "Column Annotation" view duplicates mappings
If you enter an Annotation using the Column Annotation madlib view, then switch to the table view and select another ... ben leinfelder

02/19/2010

10:33 AM Bug #4813: Include class label/description when searching
Now searching the labels that are included in the ontology. ben leinfelder
09:25 AM Bug #4813 (Resolved): Include class label/description when searching
Right now searches are fuzzy matching on the class name only. We should be looking into other text that is associated... ben leinfelder
10:01 AM Bug #4780: "Mad lib" annotation screen
closing for now - bound to be additional changes requested after review ben leinfelder
10:01 AM Bug #4814: Highlight search result matches in ontology browser
highlighting the first core match in the result tree ben leinfelder
09:27 AM Bug #4814 (Resolved): Highlight search result matches in ontology browser
Currently the tree expands and prunes to show only search matches, their ancestors, their children, and their sibling... ben leinfelder
09:04 AM Bug #4788: Popup lightweight ontology browser
closing this - i like how it's working at the moment. feels pretty natural to navigate and double click ben leinfelder

02/17/2010

10:15 AM Bug #4788: Popup lightweight ontology browser
would like to add:
-DOUBLE CLICK to select the class and close the popup
-text field should show currently selected c...
ben leinfelder
10:13 AM Bug #4794: "Mad lib" as a "Column View" tab
this is done - might be tweaked as others start to use it and provide feedback ben leinfelder
10:04 AM Bug #4794: "Mad lib" as a "Column View" tab
tweaked the padding of the data table so that the columns remain aligned with the annotation table that is now in a t... ben leinfelder
09:15 AM Bug #4794: "Mad lib" as a "Column View" tab
no more help text or scrollbars - fits nicely ben leinfelder

02/16/2010

02:23 PM Bug #4794: "Mad lib" as a "Column View" tab
I've parameterized the Annotation Page so that it omits the help text and the Observation/Measurement options and onl... ben leinfelder
01:40 PM Bug #4794: "Mad lib" as a "Column View" tab
oh, I also don't like that I have to save after each change in column selection (in case they have made a change in t... ben leinfelder
01:34 PM Bug #4794: "Mad lib" as a "Column View" tab
I've got the extra tab showing the contents of the same page that shows up when you "Annotate current column..."
This...
ben leinfelder

02/15/2010

08:01 AM Bug #4788: Popup lightweight ontology browser
also, ENTER key is not being captured by the popup - the underlying frame hears it first as if you've clicked the Ok ... ben leinfelder

02/13/2010

05:14 PM Bug #4788: Popup lightweight ontology browser
Now:
-CLICK on the field and the popup is shown
-TAB will save current selection from the popup
-ESC exits without sa...
ben leinfelder

02/12/2010

03:54 PM Bug #4794 (Resolved): "Mad lib" as a "Column View" tab
Include another tab where the Annotation Table resides. The "Column View" tab would show the madlib phrase for the cu... ben leinfelder
03:51 PM Bug #4774: Make spyglass icon more button-like
no more spyglass icon - replaced with a text field (for initiating searches) ben leinfelder
03:50 PM Bug #4780: "Mad lib" annotation screen
Reuse this madib UI in a tab where the Annotation Table is located.
When this "Column View" tab is selected:
-display...
ben leinfelder
03:46 PM Bug #4788: Popup lightweight ontology browser
This is working with some more room for refinement:
-TAB and/or ENTER key should trigger the selection and close the ...
ben leinfelder

02/11/2010

01:06 PM Bug #4779: Ontology Browser - use hybrid tree/table UI
this now works - updated the JTreeTable code from the java tutorial
http://java.sun.com/products/jfc/tsc/articles/boo...
ben leinfelder
10:39 AM Bug #4788 (Resolved): Popup lightweight ontology browser
Instead of the modal dialog, the browser should just be a super-duper-combobox ben leinfelder
06:07 PM Bug #4777: Ontology Browser - show only search matches in the tree
doing this in the "realtime ajaxy" style might be very resource intensive - especially as the number and size of the ... ben leinfelder
05:53 PM Bug #4777: Ontology Browser - show only search matches in the tree
I have the tree filtering for the searches now.
When no search term is entered, the tree resets itself (might want a ...
ben leinfelder

02/10/2010

09:57 AM Bug #4780: "Mad lib" annotation screen
added mad lib phrasing to the "Add Context..." menu:
"The Observation was made where the <Entity> was <Relationship>...
ben leinfelder
04:18 PM Bug #4780: "Mad lib" annotation screen
There's now a version of the mad lib form when you use the "Annotate current column..." option. ben leinfelder

02/09/2010

02:40 PM Bug #4780: "Mad lib" annotation screen
bowers: Here is the whole madlib (i think):
The <characteristic> of the <entity*> was recorded using the <standard>...
ben leinfelder
04:46 PM Bug #4780 (Resolved): "Mad lib" annotation screen
Discussed extensively on IRC, as well as a bit in email that kicked it off (bowers):
---
I think a "fill in the bla...
ben leinfelder
01:55 PM Bug #4768: UI for managing annotation ontologies
done for this round of plugin development - will revisit when loading remote (metacat) ontologies as well ben leinfelder
04:15 PM Bug #4768: UI for managing annotation ontologies
now loading new ontologies and unloading ontologies that are removed from the configuration ben leinfelder
01:54 PM Bug #4770: Load Annotations from Metacat in Annotation plugin
adding dependency on the UI bug so I can close that but still have a link.
My hunch is that we'll want to manage loca...
ben leinfelder
01:52 PM Bug #4776: Do not display ontology URI in any UI components
removed from the comment field and from the ontology browser ben leinfelder
04:32 PM Bug #4776 (Resolved): Do not display ontology URI in any UI components
We should be using a "friendlier" string to distinguish different ontologies instead of the formal URI.
versionInf...
ben leinfelder
01:51 PM Bug #4775: Ontology Browser - omit the ontology URI from top-level
ontology is not the top level - only the appropriate superclass[es] for the widget are shown.
the Ontology name appea...
ben leinfelder
04:28 PM Bug #4775 (Resolved): Ontology Browser - omit the ontology URI from top-level
The ontology browsing tree is confusing because the ontology URI for every active (and implicitly active) ontology is... ben leinfelder
01:27 PM Bug #4778: Ontology Browser - include more metadata about selected class
now showing two columns:
-class name
-ontology name (not the URI)
when you select a class, the description shows in ...
ben leinfelder
04:40 PM Bug #4778 (Resolved): Ontology Browser - include more metadata about selected class
Descriptions and labels and other documentation (?) that can be pulled form the ontology should be accessible when th... ben leinfelder
10:52 AM Bug #4779: Ontology Browser - use hybrid tree/table UI
base classes were already in Morpho for the Access control page.
Made some modifications for use with Onology browsin...
ben leinfelder
04:44 PM Bug #4779 (Resolved): Ontology Browser - use hybrid tree/table UI
Could augment the existing tree to include additional columns that will display additional information about the clas... ben leinfelder
04:35 PM Bug #4777 (Resolved): Ontology Browser - show only search matches in the tree
Searching for a match highlights and expands the tree to show the matches, but should also filter out non-matches.
...
ben leinfelder
04:25 PM Bug #4774 (Resolved): Make spyglass icon more button-like
The icon for launching the ontology browser should encourage clicks ben leinfelder

02/08/2010

03:10 PM Bug #4768: UI for managing annotation ontologies
created a very basic editor for the physical/logical mapping that is stored in Morpho's configuration.
It's just text...
ben leinfelder
09:43 AM Bug #4768: UI for managing annotation ontologies
You might see if the ontology manager/editor that Sean Riddle developed for Kepler could be reused in whole or part h... Matt Jones
10:15 AM Bug #4772 (New): Annotation cell selection also selects data table cell
It seems that part of column model sharing between the annotation table and the data table results in the cell select... ben leinfelder
 

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