ben leinfelder's activity
From 11/27/2011 to 12/26/2011
12/22/2011
- 09:24 AM Metacat Revision 6816 (metacat): interpret permissions as hierarchical
- https://redmine.dataone.org/issues/2150
12/21/2011
- 01:00 PM Metacat Revision 6814 (metacat): remove flag for independent system metadata replication -- these entries are replicated along with the data/metadata objects or via hazelcast when the actual object is not on the server.
- 12:33 PM Metacat Revision 6813 (metacat): update documentation to reflect changes to replication (client certificate)
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516
- 10:52 AM Metacat Revision 6812 (metacat): include SSL settings for client certificate-based replication
12/20/2011
- 05:13 PM Metacat Revision 6811 (metacat): do not include the "v1" in the base url for the target MN
- 11:25 AM Metacat Revision 6808 (metacat): process the _current_ revision, not the latest!
- use direct object/system metadata insertion for ORE maps.
- 11:21 AM Metacat Revision 6807 (metacat): allow other Metacat process (system metadata and ORE generation) to directly insert objects and system metadata without having to go through the MN/CN methods.
- 11:19 AM Metacat Revision 6806 (metacat): sort the docids so that "old" revisions are processed before newer ones
12/19/2011
- 01:07 PM Metacat Revision 6805 (metacat): only attempt to unlock a lock if it was created (in the finally block)
- 12:56 PM Metacat Revision 6804 (metacat): update tests to comply with these chenages:
- new jars with many changes -- including new CN methods: ping, describe, listChecksumAlgorithm. Removed MN.setAccessPo...
12/16/2011
- 04:24 PM Metacat Revision 6803 (metacat): new jars with many changes -- including new CN methods: ping, describe, listChecksumAlgorithm. Removed MN.setAccessPolicy. Refactored CN.setOwner() to CN.setRightsHolder().
- 12:21 PM Metacat Revision 6802 (metacat): refresh the SystemMetadata entry for EML and referenced data files when parsing EML access rules -- this ensures our in-memory system metadata map is up to date WRT the DB entries.
- 11:00 AM Metacat Revision 6800 (metacat): add revision history to the generated ORE objects -- we use the revision history of the EML package as a basis because the each ORE revision mirrors the revision of the EML package.
- Add a placeholder for checking if an equivalent ORE map exists in the DataONE infrastructure - this will be a call to...
- 09:42 AM Metacat Revision 6797 (metacat): for test to compile, provide BaseException param for setReplicationStatus. I used a NotAuthorized instance.
- 09:37 AM Metacat Revision 6796 (metacat): adjust after refactoring tests that use EML queries
12/15/2011
- 05:32 PM Metacat Revision 6790 (metacat): query for deleted metadata when testing that replication communicated the deletion. to check data, we try to update the data object on the target node (which should fail)
- 05:11 PM Metacat Revision 6789 (metacat): add test for data locking
- 01:59 PM Metacat Revision 6788 (metacat): delete data and eml on the home Metacat and check that the change propagates to the target
- 01:29 PM Metacat Revision 6787 (metacat): set SystemMetadata.archived=true on MN.delete
- There is ongoing discussion on what the exact behavior should be here, but this mimics Metacat's delete-as-archive ac...
12/13/2011
- 05:28 PM Metacat Revision 6785 (metacat): actually include the test in the suite
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
- 05:17 PM Metacat Revision 6784 (metacat): EML replication test with insert, update and set access
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
- 05:06 PM Metacat Revision 6783 (metacat): only create guid->docid mapping during metadata replication if it does not already exist
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
- 04:50 PM Metacat Revision 6782 (metacat): do not treat access change as an update -- it should not attempt to retrieve the contents of the object
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
- 04:18 PM Metacat Revision 6780 (metacat): only create guid->docid mapping during data replication if it does not already exist
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
- 03:30 PM Metacat Revision 6779 (metacat): remove xml_acccess.docid reference (oops)
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
- 03:15 PM Metacat Revision 6778 (metacat): test update and set access during replication from A->B
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
- 12:22 PM Metacat Revision 6777 (metacat): updated D1 API -- removed Permission.REPLICATE and associated parameters
- 11:51 AM Metacat Revision 6776 (metacat): a minute for replication?
- 11:34 AM Metacat Revision 6775 (metacat): process system metadata before access rules (access control is now driven by GUID so the mapping needs to be there)
- 10:58 AM Metacat Revision 6773 (metacat): include SerialVersion in describe response
- https://redmine.dataone.org/issues/2135
NOTE: d1 jars should be replaced once all schema changes are finalized and th... - 09:17 AM Metacat Revision 6772 (metacat): comment out B->A test
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
12/12/2011
- 04:33 PM Metacat Revision 6771 (metacat): use correct URLs for replication/Metacat client
- 02:57 PM Metacat Revision 6770 (metacat): simple tests for 2-way data replication
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
- 01:22 PM Metacat Revision 6769 (metacat): ROLLBACK: check for non-public session in Metacat before showing the registry form
- http://bugzilla.ecoinformatics.org/process_bug.cgi
- 12:41 PM Metacat Revision 6768 (metacat): check for non-public session in Metacat before showing the registry form
- http://bugzilla.ecoinformatics.org/process_bug.cgi
- 11:26 AM Metacat Revision 6767 (metacat): redirect to the registry form following successful login - but allow an override in case we only want to render the success and stay there (ajax call from main sanparks page).
- 10:50 AM Metacat Revision 6766 (metacat): include 'archived' system metadata element in backing DB store
12/09/2011
- 04:25 PM Metacat Revision 6765 (metacat): include the logging level with configuring logger (with file appender) for replication and dataone
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5534
- 03:28 PM Metacat Revision 6764 (metacat): add ; to end of update command
- 03:11 PM Metacat Revision 6763 (metacat): add ; to end of update command
- 02:54 PM Metacat Revision 6762 (metacat): only update accessfileid for our new guid-based records
- 02:42 PM Metacat Revision 6761 (metacat): move latest postgres access upgrade statements to oracle script
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
- 02:35 PM Metacat Revision 6760 (metacat): include revision clause when updating the accessfileid on the xml_acccess table
- 12:12 PM Metacat Revision 6759 (metacat): remove docid column in favor of guid
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
- 10:20 AM Metacat Revision 6758 (metacat): include "esa" context in the data registry URL.
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5114
12/08/2011
- 02:06 PM Metacat Revision 6755 (metacat): fix tests:
- -insert default objectFormatList from d1_common (includes schemaLocation now)
-calculate checksum for the system meta... - 01:51 PM Metacat Revision 6754 (metacat): update with latest d1_common/d1_lib (includes latest schema changes)
- 01:15 PM Metacat Revision 6753 (metacat): prepared statement toString() does not include quotes (') around the inserted values -- now the test reflects this.
- 01:12 PM Metacat Revision 6752 (metacat): only handle 100 (consecutive!) docId generations per millisecond, otherwise the generated docid part is bigger than Long.MAX_VALUE and Metacat cannot fully handle that.
- 11:27 AM Metacat Revision 6751 (metacat): Metacat now keeps track of permissions on a per-version basis -- the test reflects this change in behavior.
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
- 11:22 AM Metacat Revision 6750 (metacat): check previous revision when attempting to update access control with EML 2.0.x docs
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
- 10:17 AM Metacat Revision 6749 (metacat): remove old access rules for a data object when they are being updated by rules contained in an EML document. Now the OnlineDataAccessTest EML 2.1.0 tests pass.
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
12/07/2011
- 05:31 PM Metacat Revision 6748 (metacat): construct the proper previousDocId when checking for update permission
- 05:05 PM Metacat Revision 6747 (metacat): for now, look up SystemMetadata directly from the table otherwise we won't have the latest access information. Need to refresh the in-memory copy everytime we edit the access policy via Metacat (includes EML parser)
- 05:04 PM Metacat Revision 6746 (metacat): check previous revision for permissions to update (includes data described by EML)
- 05:02 PM Metacat Revision 6745 (metacat): use correct "rev" column in xml_revisions table
- 12:18 PM Metacat Revision 6744 (metacat): refactor Metacat access handling to be on a per-revision basis so that it more closely aligns with the DataONE approach
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
12/06/2011
- 03:03 PM Metacat Revision 6740 (metacat): retry: add node name in the correct order for predicate navigation
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5561
- 02:51 PM Metacat Revision 6739 (metacat): update test to reflect newer change:
- handle queries with predicates correctly.
when docids are used in the return field look up, we need to make sure they... - 02:50 PM Metacat Revision 6738 (metacat): add node name in the correct order for predicate navigation
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5561
12/02/2011
- 05:32 PM Metacat Revision 6734 (metacat): handle queries with predicates correctly.
- when docids are used in the return field look up, we need to make sure they are included in the values in the correct...
- 11:27 AM Metacat Revision 6732 (metacat): close prepared statement only if not null
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5562
12/01/2011
- 01:30 PM Metacat Revision 6727 (metacat): ensure that the revision list is ordered ascending in case someone changes the sql query without realizing that it matters...
- 01:21 PM Metacat Revision 6726 (metacat): set the byte size of the ORE map before adding it
- 01:12 PM Metacat Revision 6725 (metacat): set/update the obsoletes/obsoletedBy fields in system metadata so that we always have a complete revision history for each object.
- Note: ORE maps do not have revision history...yet(?)
- 01:10 PM Metacat Revision 6724 (metacat): order the revision list, ascending.
- 11:57 AM Metacat Revision 6723 (metacat): removing unused class -- can't find a reference to it and it's causing compilation errors for me.
- 11:53 AM Metacat Revision 6722 (metacat): for "all" permission, return a list of READ, WRITE, CHANGE_PERMISSION
11/30/2011
- 05:31 PM Metacat Revision 6721 (metacat): generating ORE maps and creating/updating system metadata now. There are some Permission conversion issues to be worked out yet
- 05:25 PM Metacat Revision 6720 (metacat): look up access policy by guid or local id
- TODO: resolve the Metacat/EML "all" permission as it relates to DataONE (there is only READ, WRITE, CHANGE_PERMISSION...
- 05:23 PM Metacat Revision 6719 (metacat): make exception/error reporting clearer -- was getting lock messages when perhaps that was not the correct exception.
- 05:22 PM Metacat Revision 6718 (metacat): look up all docids is now a static method (ORE/SystemMetadata generation)
11/29/2011
- 03:43 PM Metacat Revision 6714 (metacat): evict the HazelCast SystemMetadata entry if we update the access control rules via Metacat's legacy API, otherwise stale SystemMetadata stays in memory instead of being looked up from the backing table store.
- 03:41 PM Metacat Revision 6713 (metacat): optionally include ORE generation/insertion into Metacat when generating SystemMetadata
- https://redmine.dataone.org/issues/2056
- 02:15 PM Metacat Revision 6712 (metacat): optionally include ORE generation/insertion into Metacat when generating SystemMetadata
- https://redmine.dataone.org/issues/2056
- 01:41 PM Metacat Revision 6710 (metacat): no need to cast docInfo entries to String -- they are all strings
- 01:39 PM Metacat Revision 6709 (metacat): set revision history, the create/update dates and the owner/submitter (correctly)
- 01:05 PM Metacat Revision 6708 (metacat): use shared method for looking up "docInfo" map -- both in Metacat replication and in D1 system metadata generation
- 12:38 PM Metacat Revision 6707 (metacat): make default formatting a little bit easier to read
- 12:33 PM Metacat Revision 6706 (metacat): reformat code -- no changes
- 12:31 PM Metacat Revision 6705 (metacat): refactor SystemMetadata creation into separate class from the MetacatHandler -- this will be shared by upgrade code and normal metacat api.
- 11:00 AM Metacat Revision 6704 (metacat): include all document revisions when generating "missing" system metadata
- TODO: revision graph captured in obsoletes/obsoletedBy
11/28/2011
- 04:09 PM Metacat Revision 6701 (metacat): simplify SystemMetadata generation -- will be done during Metacat upgrade for D1 features/support.
- 03:53 PM Metacat Revision 6700 (metacat): clean up populator; use IOUtils library to do string<->stream conversions
- 03:37 PM Metacat Revision 6699 (metacat): utilities jar should not be committed to Metacat otherwise we will not retrieve the tagged version during Metacat build process.
- 03:04 PM Metacat Revision 6698 (metacat): catch all possible exceptions
- 02:44 PM Metacat Revision 6697 (metacat): act as a registered CN when calling CN methods -- create(), for example, is restricted to only be callable by a node of type CN.
- 12:34 PM Metacat Revision 6695 (metacat): use IOUtils for testing read/write of XML strings. This goes along with the utilities project change to use the same apache commons IO library. Be sure to clean the utilities checkout in order to catch the right utilities svn tag when building!
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