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ben leinfelder's activity

From 05/25/2012 to 06/23/2012

06/22/2012

08:55 AM Metacat Revision 7284 (metacat): use production cn url for the resolve url
ben leinfelder

06/20/2012

01:46 PM Metacat Revision 7283 (metacat): remove the non-doi identifiers before updating the LTER - should save time on the update.
https://redmine.dataone.org/issues/2858 ben leinfelder

06/18/2012

11:57 PM Metacat Revision 7281 (metacat): use eml stylesheet tag (1.0.3)
ben leinfelder
11:57 PM Metacat Revision 7280 (metacat): use 1.0.2 d1_libclient jar (built by hudson)
ben leinfelder
03:43 PM Metacat Revision 7278 (metacat): set archived flag (true) when we set the obsoletedBy value in the ORE system metadata
ben leinfelder
02:27 PM Metacat Revision 7276 (metacat): update for 2.0.1 upgrade -- scripts, docs, readme
ben leinfelder
02:24 PM Metacat Revision 7275 (metacat): remove saxon jar (XSLT 2.0 support) with plans to re-add when we understand how to make it more lenient WRT to invalid character content in source XML
ben leinfelder
12:43 PM Metacat Revision 7274 (metacat): move to 1.0.2 d1_libclient jar for ORE generation change (URI for aggregation)
ben leinfelder
12:13 PM Metacat Revision 7273 (metacat): use the localId for obsoletes/obsoletedBy ORE system metadata (https://redmine.dataone.org/issues/2964)
ben leinfelder
12:12 PM Metacat Revision 7272 (metacat): use correct esa email list
ben leinfelder

06/11/2012

08:41 PM Metacat Revision 7271 (metacat): include xml-apis*.jar when building the LSID authority.war -- without this file the authority webapp has a fatal error (no class def found) on init.
ben leinfelder

06/07/2012

05:16 PM Metacat Revision 7270 (metacat): correct block formatting for tomcat config changes
ben leinfelder
05:01 PM Metacat Revision 7269 (metacat): add tomcat config options for DataONE identifiers with slashes
ben leinfelder
09:19 AM Metacat Revision 7263 (metacat): use 1.0.2 tag for EML stylesheets
ben leinfelder
09:04 AM Metacat Revision 7262 (metacat): update MN registration screen shot and amend instructions that say a nodeId will be assigned during registration.
add section about generating SM for a new Member Node that has existing Metacat data. ben leinfelder
08:23 AM Metacat Revision 7261 (metacat): use CN session when testing getLogRecords() and getOperationStatistics() becuase they are now protecting "sensitive" information
ben leinfelder
12:43 AM Metacat Revision 7259 (metacat): use RC for EML stylesheets before going to yet another minor revision number.
ben leinfelder
12:25 AM Metacat Revision 7258 (metacat): report errors during XML->HTML transform
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5618 ben leinfelder

06/06/2012

09:57 PM Metacat Revision 7257 (metacat): add 'fulldist' target to combine building of src and bin distributions
ben leinfelder
09:56 PM Metacat Revision 7256 (metacat): include gastil's changes re: pathquery and 'delete'
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516 ben leinfelder
07:39 PM Metacat Revision 7254 (metacat): Add details for configuring Apache to use client certificate authentication.
ben leinfelder
03:33 PM Metacat Revision 7253 (metacat): use production CN url as the default (instead of cn-dev)
ben leinfelder
01:13 PM Metacat Revision 7250 (metacat): remove distribution tar.gz and zip files on fullclean.
ben leinfelder
12:55 PM Metacat Revision 7249 (metacat): use iframe id for the login anchor since the anchor inside the iframe does not work.
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5619 ben leinfelder
12:50 PM Metacat Revision 7248 (metacat): get utilities source from the correct checkout location
ben leinfelder
12:50 PM Metacat Revision 7247 (metacat): clarify release notes for 2.0.0 (minor)
ben leinfelder
11:01 AM Metacat Revision 7246 (metacat): correct Javadoc link http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516
ben leinfelder

06/05/2012

09:42 PM Metacat Revision 7243 (metacat): apply Gastil's edits. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5516
ben leinfelder
09:20 PM Metacat Revision 7242 (metacat): add section about configuring the metacat.properties with the paths to the server certificate and key
ben leinfelder
07:02 PM Metacat Revision 7241 (metacat): remove unused replication properties (all certificate file based now)
ben leinfelder
04:46 PM Metacat Revision 7240 (metacat): use 1.0.1 DataONE jars
ben leinfelder
04:44 PM Metacat Revision 7239 (metacat): use KNB identifier table (post DOI generation) to update LTER identifier table.
https://redmine.dataone.org/issues/2857 ben leinfelder

06/04/2012

08:49 PM Metacat Revision 7234 (metacat): restrict getLogRecrods (both MN and CN) to be called only by admin users (the CN)
https://redmine.dataone.org/issues/2855 ben leinfelder
08:15 PM Metacat Revision 7233 (metacat): use updated tag for EML stylesheet-only changes
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5597 ben leinfelder
08:04 PM Metacat Revision 7232 (metacat): use updated tag for EML stylesheet-only changes
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5597 ben leinfelder

06/01/2012

12:47 PM Metacat Revision 7229 (metacat): do not include releaseCandidate property - does not seem to be used except for debian? packaging which was never fully implemented.
ben leinfelder
12:39 PM Metacat Revision 7228 (metacat): use non-snapshot D1 jars in prep for tagging/release. Still RCs
ben leinfelder
10:45 AM Metacat Revision 7227 (metacat): script to aid in converting denyFirst rules to allowFirst
https://redmine.dataone.org/issues/2613 ben leinfelder
10:40 AM Metacat Revision 7226 (metacat): use kepler account as default
ben leinfelder
10:39 AM Metacat Revision 7225 (metacat): use current default tomcat6 deploy directory
ben leinfelder
09:35 AM Metacat Revision 7224 (metacat): include test shoulder defaults for KNB, PISCO and LTER
ben leinfelder

05/31/2012

09:04 PM Metacat Revision 7222 (metacat): use metacat.properties to specify the default checksum algorithm to use -- this way it will be easy for us to switch to whatever DataONE decrees.
https://redmine.dataone.org/issues/2834 ben leinfelder
06:16 PM Metacat Revision 7221 (metacat): put(sm) for every pid we have a SM value for so that all members receive the entry event and can save locally.
ben leinfelder
02:11 PM Metacat Revision 7220 (metacat): add section about importing self-signed certificates into the Java keystore (now that we use strict verification on the java client side when calling replication endpoints).
ben leinfelder
02:01 PM Metacat Revision 7219 (metacat): a few additional notes about Metacat replication configuration.
ben leinfelder
10:53 AM Metacat Revision 7217 (metacat): ignore partition owner -- always attempt to look up form local store if we were unable to get the SM from the shared map.
ben leinfelder
10:13 AM Metacat Revision 7216 (metacat): do not check if this CN has a "perfect" copy of the SM identifiers -- we need any CN coming online to contribute the records that they have locally so that in the event that all three CNs have a partial view of things they all eventually share each others' SM entries.
ben leinfelder
09:19 AM Metacat Revision 7213 (metacat): push SystemMetadata entries from the CN that has them all to the shared map where other nodes may not have all entries. The CN with the complete copy only pushes SM entries that it does not own and that return as null because those are the ones that are missing on the other, non-complete CNs.
This is different from the previous approach where a stale CN tried to PULL it's missing entries from the shared map.... ben leinfelder

05/30/2012

10:00 PM Metacat Revision 7212 (metacat): trace level log for looping over EVERY pid in the system.
ben leinfelder
09:47 PM Metacat Revision 7211 (metacat): meant to log the guids (source) not the pids (target)
ben leinfelder
08:51 PM Metacat Revision 7210 (metacat): trace level log for looping over EVERY pid in the system.
ben leinfelder
08:18 PM Metacat Revision 7209 (metacat): logging for each step of shared identifiers loading.
ben leinfelder
08:07 PM Metacat Revision 7208 (metacat): remove pause/resume - seemed to make metacat just hang on SM retrieval. Add more logging when returned SM is null -- want to make sure it is becuase the local node "owns" the pid key even though there is no value for it.
ben leinfelder
06:12 PM Metacat Revision 7207 (metacat): due to hudson build issue, did not actually end up testing pause/resume -- trying that again
ben leinfelder
05:53 PM Metacat Revision 7206 (metacat): pause/resume was not enough. trying shutdown/restart
ben leinfelder
05:02 PM Metacat Revision 7205 (metacat): experiment with lifecycle pause/resume. hopefully it prevents our node from taking ownership of any keys before we are sure we have them all.
ben leinfelder
08:29 AM Metacat Revision 7204 (metacat): increase logging and add back in the call to saveLocally() in case the SM object has already been loaded into the shared map but before this node came back online.
ben leinfelder

05/29/2012

11:21 PM Metacat Revision 7203 (metacat): no need to call saveLocally explicitly since loading from the shared store triggers that behavior locally because of the configured listeners.
use an iterator over the shared identifiers in case this set is constantly changing. ben leinfelder
10:10 PM Metacat Revision 7202 (metacat): make only one DB call to look up local pids - no need to do a pstmt for every single shared pid.
ben leinfelder
09:05 PM Metacat Revision 7201 (metacat): on init (start up) launch a synchronization thread that ensures all shared identifier entries have a corresponding local System Metadata entry.
ben leinfelder
04:19 PM Metacat Revision 7200 (metacat): use 'allowFirst' for access rules. We have deprecated 'denyFirst' and deny rules in Metacat as of 2.0.0
ben leinfelder
03:02 PM Metacat Revision 7199 (metacat): handle https-only server configuration -- must pull resources from https not http for the skins etc.
ben leinfelder
02:53 PM Metacat Revision 7198 (metacat): handle https-only server configuration -- must pull resources from https not http for the skins etc.
ben leinfelder
10:31 AM Metacat Revision 7197 (metacat): fix NPE (logMetacat object was not initialized) that was occurring during store()
ben leinfelder
09:33 AM Metacat Revision 7196 (metacat): stack trace the HZ put exception during CN-CN replication
ben leinfelder
07:37 AM Metacat Revision 7195 (metacat): additional debugging statements for CONCURRENT_MAP_PUT error during CN-CN replication.
ben leinfelder

05/28/2012

01:25 PM Metacat Revision 7194 (metacat): include eml2.0.0beta4 DTD during Metacat build so that we can continue to accept (and validate) beta4 documents.
This arose when testing Metacat as DataONE Coordinating Node where legacy documents are being housed in the CN. ben leinfelder

05/27/2012

09:03 AM Metacat Revision 7193 (metacat): encode '/' and ':' in the DOI used for the resolve URL
ben leinfelder

05/25/2012

04:23 PM Metacat Revision 7191 (metacat): include revisions table in the initial temp table population.
use the "first" creator listed in the EML (either org or person).
use other reasonable default values as needed to fu...
ben leinfelder
02:30 PM Metacat Revision 7190 (metacat): add columns: publisher and pub_date. include default values for all columns - even data files should have title.
still a few todos but closer.
https://redmine.dataone.org/issues/2815
ben leinfelder
12:07 PM Metacat Revision 7189 (metacat): script to generate DOI registration spreadsheet
https://redmine.dataone.org/issues/2815 ben leinfelder
 

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