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# Date Author Comment
5696 12/07/2010 03:31 PM ben leinfelder

add stats to semtools

5694 12/07/2010 02:03 PM ben leinfelder

add stylesheet for rendering simple stats for access log

5690 12/06/2010 11:29 AM ben leinfelder

Make resultset more data package centric

5689 12/03/2010 05:08 PM ben leinfelder

select the tree node when exact match is found

5688 12/03/2010 04:24 PM ben leinfelder

check for exact class match when typing into search term - if there is one, then select it as the chosen term

5687 12/02/2010 04:16 PM ben leinfelder

always open the top level node of the tree when it loads

5686 12/02/2010 11:38 AM ben leinfelder

do not show visual indication of "focused" tree - it looks random because it mostly is (at least when refeshing it with the current active domain - the calls are all asynchronous so we don't ever really know which one will be created last and therefore gain the focus)

5685 12/02/2010 11:29 AM ben leinfelder

load search results when page first loads (browsing - no query constraints)

5684 12/02/2010 11:16 AM ben leinfelder

remove special ">>" character from style sheet
use absolute path to the spinner animated gif

5678 12/01/2010 12:07 PM ben leinfelder

include busy spinner when loading search results

5677 12/01/2010 10:29 AM ben leinfelder

using div tags for the search results now (with some tables too)

5676 12/01/2010 10:06 AM ben leinfelder

commit before trying div-only resultset

5675 11/30/2010 05:44 PM ben leinfelder

hide/show search result details for each matched row.

5672 11/30/2010 03:34 PM ben leinfelder

-use a tab for search options
-search results are in their own container now
-jquery ui and semtools css share same corner radius
-removed form-based "link" in resultset xsl

5669 11/30/2010 02:12 PM ben leinfelder

use jquery UI tabs to separate the Measurement criteria from E,C,P

5668 11/29/2010 04:44 PM ben leinfelder

-"Clear" button actually clears the form and refreshes the search results w/o constraints
-active domain check boxes are honored when refreshing active domain after selection is made in a different tree

5667 11/29/2010 03:49 PM ben leinfelder

"remember" selected/opened nodes when active domain is filtered on click. also using separate cookies for each tree so that it can remember it's state on page reload.

5666 11/23/2010 05:02 PM ben leinfelder

refresh the other trees with active domain when selection is made.
TODO: remember last selected node in the tree and open the tree to that node

5665 11/23/2010 04:18 PM ben leinfelder

asynchronously load search results after each tree selection event

5664 11/23/2010 11:54 AM ben leinfelder

add checkbox for active domain pruning on each tree.

5663 11/23/2010 09:34 AM ben leinfelder

prune the search tree - keep parents and children of matched nodes

5662 11/22/2010 06:34 PM ben leinfelder

set the selected concept as the value in the search field

5661 11/22/2010 04:37 PM ben leinfelder

remove bioportal search fields

5660 11/22/2010 04:25 PM ben leinfelder

include scroll bars for the jsTrees

5659 11/19/2010 04:42 PM ben leinfelder

no more aqua for search results

5658 11/19/2010 04:06 PM ben leinfelder

add search box for finding an entry in the tree

5656 11/19/2010 03:06 PM ben leinfelder

include jsTree for navigating the ontology hierarchy when making class selections for the search

5635 11/09/2010 02:47 PM ben leinfelder

comment out debugging alert

5634 11/09/2010 02:27 PM ben leinfelder

use SERVLET_URL not fred

5633 11/09/2010 12:47 PM ben leinfelder

use jQuery to build active domain selections

5632 11/08/2010 05:25 PM ben leinfelder

starting to filter by active domains. still request-based, but would like to make asynchronous calls when populating the fields.

5618 10/15/2010 10:51 AM ben leinfelder

allow default style to be used for the registry (added login mapping)

5604 10/07/2010 01:33 PM ben leinfelder

look up the active annotation classes

5602 10/07/2010 11:51 AM ben leinfelder

browse/search/madlib hybrid sample

5601 10/06/2010 02:55 PM ben leinfelder

use newer SBC-ish style for the default skin

5600 10/06/2010 11:46 AM ben leinfelder

include css classes for skins (like default and semtools) that use the "subGroup" class

5599 10/06/2010 11:05 AM ben leinfelder

use newer SBC-ish style for the default skin

5598 09/28/2010 03:11 PM ben leinfelder

correctly set the map location based on organizationScope

5597 09/28/2010 03:09 PM ben leinfelder

correctly set the organizationScope from the request value - filters the search results by location

5594 09/23/2010 02:39 PM ben leinfelder

use <p> consistently when providing a tooltip for the full class URI

5593 09/23/2010 02:35 PM ben leinfelder

number of changes:
-list measurements across the screen under their observation
-use title attributes for full ontology class URI, only show full URI for the entity class since there is horizontal room
-make the annotation box more compact and intuitive for both screens (details and search results)

5592 09/23/2010 02:33 PM ben leinfelder

make DP title bold in result set

5591 09/23/2010 01:07 PM ben leinfelder

nest annotation groupings nicely for each obs/meas

5590 09/23/2010 12:40 PM ben leinfelder

include nesting borders

5589 09/23/2010 12:24 PM ben leinfelder

integrate Annotation in resultset better

5588 09/23/2010 12:12 PM ben leinfelder

place annotation information in the same cell as the data package title/id

5587 09/23/2010 11:56 AM ben leinfelder

include content in a wrapper div for margins

5586 09/23/2010 11:54 AM ben leinfelder

comment out debugging alert()

5585 09/23/2010 11:52 AM ben leinfelder

do not make hyperlinks extra bold

5584 09/23/2010 11:51 AM ben leinfelder

reduce white space

5583 09/23/2010 11:51 AM ben leinfelder

include some gray in the paragraphs

5581 09/23/2010 11:37 AM ben leinfelder

use "Myriad..." fonts, then cascade down to Arial, sans... Lifted from BioPortal L+F

5578 09/22/2010 05:00 PM ben leinfelder

only show that an annotation exists in the resultset, not the full details

5576 09/22/2010 11:23 AM ben leinfelder

make the header hyperlinks bold

5575 09/22/2010 11:07 AM ben leinfelder

reduce header font sizes

5574 09/22/2010 10:59 AM ben leinfelder

wrap content in div for margins
add bottom margin on header

5573 09/22/2010 10:58 AM ben leinfelder

include clearer font [size]
add leaf at right

5571 09/22/2010 10:08 AM ben leinfelder

use light grey for backgrounds
dark grey for links

5570 09/22/2010 09:49 AM ben leinfelder

don't use green for links

5569 09/21/2010 04:50 PM ben leinfelder

include new graphic header for semtools skin.
adjust css to fit better

5567 09/21/2010 02:30 PM ben leinfelder

only surround main dataset with border to avoid a weird border artifact when displaying sub-groups of the eml package

5566 09/21/2010 02:29 PM ben leinfelder

include header/footer like in the old JS-based template

5565 09/21/2010 01:08 PM ben leinfelder

do away with the "eml-common.xsl" - it's not really worth it in terms of being able to customize for each skin

5564 09/21/2010 12:51 PM ben leinfelder

use sbclter css

5563 09/21/2010 12:34 PM ben leinfelder

use shared style sheets for rendering eml. this is sbclter/pisco-like

5562 09/21/2010 12:31 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5561 09/21/2010 12:31 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5560 09/21/2010 12:29 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5558 09/21/2010 11:03 AM ben leinfelder

remove duplicate "attributeindex" parameter

5544 09/08/2010 02:32 PM ben leinfelder

removing unused search pages (leftover from 'default' skin copy)

5543 09/07/2010 04:30 PM ben leinfelder

separate the class and the ontology from the the URI for easier reading. putting them in a table also helps

5542 09/07/2010 03:49 PM ben leinfelder

include links from annotation to the data package metadata

5541 09/07/2010 03:06 PM ben leinfelder

include stylesheet to display annotation document on it's own (in addition to within a resultset)

5540 09/07/2010 02:40 PM ben leinfelder

include the column name that the measurement is mapped to

5539 09/07/2010 11:39 AM ben leinfelder

list the currently registered ontologies (in case someone wants to unregister them?)

5538 09/07/2010 10:06 AM ben leinfelder

rearrange the ontology registration page - bioportal-hosted ontologies come first

5537 09/06/2010 04:50 PM ben leinfelder

include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.

5536 09/03/2010 04:53 PM ben leinfelder

include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.

5535 09/01/2010 02:19 PM ben leinfelder

include a page for [un]registering ontologies with the ontology manager in the semtools plugin

5533 08/30/2010 04:34 PM ben leinfelder

basic query can be issued and includes:
-match any/all
-from same observation
-for Entity, Characteristic, Standard, Protocol, Measurement

5509 08/23/2010 12:37 PM ben leinfelder

include bioportal widgets, at least for an example.
oboe-sbc and oboe are both registered as tests.

5504 08/19/2010 04:55 PM ben leinfelder

map the eml 2.1.0 documents to be rendered by the correct (existing) stylesheet.

5501 08/13/2010 01:50 PM Jing Tao

Merge 1.9.3 branch to the trunk.

5492 08/12/2010 11:31 AM ben leinfelder

merge 1.9.3 change to include karxml 2.1 documents in search/rendering

5476 08/04/2010 12:10 PM ben leinfelder

remove "indus" urls

5438 07/20/2010 03:56 PM berkley

adding dataone to the login org choice for the dev skin

5385 06/11/2010 05:00 PM ben leinfelder

starting point for semtools skin. augmenting default skin with Annotation documents.
not yet semantically enhanced search capabilities, but you can see a listing of both EML and Annotations on the server.

5372 05/25/2010 05:15 PM Jing Tao

Commit the change for Madhusudan Gujral from java.net.URL url = new java.net.URL;
to java.net.URL url = new java.net.URL;

5367 05/18/2010 04:27 PM Jing Tao

Fixed bug the download link didn't work.

5361 05/17/2010 03:36 PM Jing Tao

Add a mapping between kar xml namespace and karxml.xsl.

5360 05/17/2010 03:34 PM Jing Tao

Add a style sheet to transform kar xml document.

5357 05/14/2010 05:57 PM Jing Tao

Change the search query according to the karxml change.

5354 05/13/2010 04:28 PM Jing Tao

Change the return type from kar to the namespace.

5311 04/14/2010 11:31 AM daigle

Merge 1.9.2 changes back into the trunk

5202 01/27/2010 09:51 AM daigle

Populate esa home links with skin property value

5187 01/07/2010 01:37 PM daigle

change dropdown select event to work on IE.

5185 01/06/2010 02:05 PM daigle

Fix main cross browser gui compatibility issues in sanparks tpc skin.

5184 01/06/2010 02:05 PM daigle

Fix main cross browser gui compatibility issues in sanparks tpc skin.

5183 01/06/2010 02:03 PM daigle

Remove commas from the end of lists because they break IE

5182 01/06/2010 11:41 AM ben leinfelder

remove the "optional" tip since it is not currently optional