include EML 2.1.1 documents in skin (path query search, mostly)
do not use replace() XPath function - it is 2.0 (not in Xalan)
increase height of the iframe classes to accommodate content
catch error when jQuery is not included in the page, but do nothing
include loadStats() method in branding.js to be reused more widely (with qformat parameter)
move jquery and jquery plugins from semtools to common directory - reuse in default skin
add download count for data entities (online distribution)
use simple mode - just read events tallied
make call to load stats when displaying the data package information
include stats for annotation and data package
include jquery and loadStats() method (in search.js)
use contextURL parameter
add stats to semtools
add stylesheet for rendering simple stats for access log
Make resultset more data package centric
select the tree node when exact match is found
check for exact class match when typing into search term - if there is one, then select it as the chosen term
always open the top level node of the tree when it loads
do not show visual indication of "focused" tree - it looks random because it mostly is (at least when refeshing it with the current active domain - the calls are all asynchronous so we don't ever really know which one will be created last and therefore gain the focus)
load search results when page first loads (browsing - no query constraints)
remove special ">>" character from style sheetuse absolute path to the spinner animated gif
include busy spinner when loading search results
using div tags for the search results now (with some tables too)
commit before trying div-only resultset
hide/show search result details for each matched row.
-use a tab for search options-search results are in their own container now-jquery ui and semtools css share same corner radius-removed form-based "link" in resultset xsl
use jquery UI tabs to separate the Measurement criteria from E,C,P
-"Clear" button actually clears the form and refreshes the search results w/o constraints-active domain check boxes are honored when refreshing active domain after selection is made in a different tree
"remember" selected/opened nodes when active domain is filtered on click. also using separate cookies for each tree so that it can remember it's state on page reload.
refresh the other trees with active domain when selection is made.TODO: remember last selected node in the tree and open the tree to that node
asynchronously load search results after each tree selection event
add checkbox for active domain pruning on each tree.
prune the search tree - keep parents and children of matched nodes
set the selected concept as the value in the search field
remove bioportal search fields
include scroll bars for the jsTrees
no more aqua for search results
add search box for finding an entry in the tree
include jsTree for navigating the ontology hierarchy when making class selections for the search
comment out debugging alert
use SERVLET_URL not fred
use jQuery to build active domain selections
starting to filter by active domains. still request-based, but would like to make asynchronous calls when populating the fields.
allow default style to be used for the registry (added login mapping)
look up the active annotation classes
browse/search/madlib hybrid sample
use newer SBC-ish style for the default skin
include css classes for skins (like default and semtools) that use the "subGroup" class
correctly set the map location based on organizationScope
correctly set the organizationScope from the request value - filters the search results by location
use <p> consistently when providing a tooltip for the full class URI
number of changes:-list measurements across the screen under their observation-use title attributes for full ontology class URI, only show full URI for the entity class since there is horizontal room-make the annotation box more compact and intuitive for both screens (details and search results)
make DP title bold in result set
nest annotation groupings nicely for each obs/meas
include nesting borders
integrate Annotation in resultset better
place annotation information in the same cell as the data package title/id
include content in a wrapper div for margins
comment out debugging alert()
do not make hyperlinks extra bold
reduce white space
include some gray in the paragraphs
use "Myriad..." fonts, then cascade down to Arial, sans... Lifted from BioPortal L+F
only show that an annotation exists in the resultset, not the full details
make the header hyperlinks bold
reduce header font sizes
wrap content in div for marginsadd bottom margin on header
include clearer font [size]add leaf at right
use light grey for backgroundsdark grey for links
don't use green for links
include new graphic header for semtools skin.adjust css to fit better
only surround main dataset with border to avoid a weird border artifact when displaying sub-groups of the eml package
include header/footer like in the old JS-based template
do away with the "eml-common.xsl" - it's not really worth it in terms of being able to customize for each skin
use sbclter css
use shared style sheets for rendering eml. this is sbclter/pisco-like
consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories
remove duplicate "attributeindex" parameter
removing unused search pages (leftover from 'default' skin copy)
separate the class and the ontology from the the URI for easier reading. putting them in a table also helps
include links from annotation to the data package metadata
include stylesheet to display annotation document on it's own (in addition to within a resultset)
include the column name that the measurement is mapped to
list the currently registered ontologies (in case someone wants to unregister them?)
rearrange the ontology registration page - bioportal-hosted ontologies come first
include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.
include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.
include a page for [un]registering ontologies with the ontology manager in the semtools plugin
basic query can be issued and includes:-match any/all-from same observation-for Entity, Characteristic, Standard, Protocol, Measurement
include bioportal widgets, at least for an example.oboe-sbc and oboe are both registered as tests.
map the eml 2.1.0 documents to be rendered by the correct (existing) stylesheet.
Merge 1.9.3 branch to the trunk.
merge 1.9.3 change to include karxml 2.1 documents in search/rendering
remove "indus" urls
adding dataone to the login org choice for the dev skin
starting point for semtools skin. augmenting default skin with Annotation documents.not yet semantically enhanced search capabilities, but you can see a listing of both EML and Annotations on the server.
Commit the change for Madhusudan Gujral from java.net.URL url = new java.net.URL;to java.net.URL url = new java.net.URL;