Metacat

do not use the jdk logging - this was being used with the datamanager for some reason (but not the rest of metacat).
we use log4j...

Add code from Bill Baker, which uses certficate to login metacat.

change name of workflowjobid parameter to be workflowjobname which is more accurate

Add session Validation action and session timeout functionality.

remove base dir definitions from configuration

point workflow requests to the new workflow servlet.

Move workflow scheduler lib files into their own directory

Remove metacat web servlet that was added last week

Change location of PropertyService to properties directory

Persist skin properties across installations

Change MetaCatVersion to MetacatVersion

includes ability to select null attributes for unions

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Add documentation files to the 'docs/dev/oaipmh' directory. * Delete two obsolete files. * Modify class description comment in MetacatRecordFactory.java

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair. * Terminate harvest if login failed. * Add runHarvester.sh shell script

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair.

fixes for first installation

include first as an available skin

Fix references to db classes that were moved and refactoring missed.

Create database and shared directories for database management code and shared code respectively.

Create replication directory. Move replication code there. Use log4j for replication logging (rollingfileappender). Beef up replication logging and error control.

Add the ability to delete a scheduled workflow (move status to deleted in database)

Added end time to workflow scheduler.

Propagate the kar id throughout the configuration screens.

Populate admin login user dropdown with configured admins

Input date formatting changes

Use context url instead of server IP. Server IP breaks if the server does not have an externally facing IP (behind a proxy server)

include datamanager configuration in the /admin utility (for FIRST project...and others down the road)

override the 10px margin that was added to the EML stylesheet that we are including.

Implement fix for Bug #4245: Harvester command line scripts don't execute.

-handle new(?) XPath for the question prompt and include in the CSV download
-sort the multiple choice options

fix name="...." attribute that was causing problems in IE (it was a typo, but not caught in firefox)
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4262

sort workflow run results by:
-date executed (desc)
-tpc name (asc)

sort workflow results by:
-date (desc)
-tpc name (asc)

Add debug statement

replace // with #

Created new AuthStub class to always authenticate.

Adjust width of workflow resultset column so download link shows up

Beef up search. Change pdf report element name.

Add upgrade scripts for 1.9.2 (scheduler tables)

Beef up comments

Added so axis call to workflow engine will work (attachments support)

Updates primarily for final workflow and run xml metadata design

remove duplicate jar - same version as existing one

axis-ant (1.3) support in metacat

moved axis-ant.jar to lsid_lib

axis-ant (1.3) support in metacat (may need additional jars)

Add svn ant jars and revert quartz jar back to 1.5.2 for compatibility issues.

Added tpc workflow search and browse capabilities

Add archival read funtionality (jar/kar/war files)

Added tpc workflow search and browse capabilities

Added tpc workflow search and browse capabilities

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
1. Refactor the 'eml' metadataPrefix into a distinct metadataPrefix value (and corresponding crosswalk class) for each EML version:
eml-2.0.0, eml-2.0.1, eml-2.1.0. (In recent VTC discussion, we decided not to add support for the older 'beta' versions of EML 2.0.0.)...

Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
Add support for request parameter "metadataPrefix=eml". This returns EML 2.1.0 records in an OAI-PMH format. EML 2.0.0 and 2.0.1 documents are first transformed to EML 2.1.0 using the eml201to210.xsl stylesheet that is packaged with the EML Utilities.

Begin development for Bug 3835: Design and implement OAI-PMH compliant harvest subsystem

Add redirect to skins directory.

include the "mock up" search fields

Fix reference to old common/eml-2.0.1 directory

Fix reference to old common/eml-2.0.1 directory

Further fixes to handle mixed-file uploads:
- set the fileCount object based on upCount existing files
- use ucount only if it exists; remove debugging'
- the entry form javascript now correctly tracks the file numbers, and can be relied on instead of using upCount...

fix bug #3950, make additional uploads stick when modifying a document

Change confirm page text to make it seem less like a receipt of completed information, which has confused a few NCEAS participants. Lower the visual impact of the horizontal rules.

Enable uploads for the default KNB skin. With the improvements to infrastructure Mike's done, this should work like a charm

do not duplicate the true/false indicators for the metadata vocab/value matrix

use recordNum instead of studentId for transposed data

use "recordNum" rather than "studentId"

omit studentId values from normal resultset
strip the html tags from the qti elements for both return formats

Removed spatial coverage requirement for KNB skin

disable output escaping for CDATA html elements

split vocab/value into two columns (can easily switch back to single column)

question choices and metadata selection controlled by a counter - can easily increase the number returned...note: probably need to make this a parameter for user or be intelligent about figuring what the widest question is (ie: does it have 5,10,20! metadata entries?)

include short answer prompts in the resultset view

include prompt for both multiple choice and short answer questions when downloading

omit the demographic data - this is not well-defined for the prototype

omit duplicate values in the for the standard metadata header section (columns for each question)

omit the metadata vocab/values from the normal header section since they will be used in the "matrix-style" header section

add vocab name/value matrix above data rows.
currently there is only a single column for the concatenated value of the vocab name + "/" + vocab value. it's so much easier!

reduce the extra whitespace on the transpose

hide the "transpose" checkbox except when on the data cart page

use name attributes for selection entity-attributes.
note: this is still a static version of which question-level metadata is being included in the resultset

only "correct" non-null values

allow both text nodes and cdata nodes to provide content for document data package values (FIRST)

include qPrompt and qChoice
need to quote the csv so that commas in the question text do not throw it off

Now the metadata attributes show as rows above the data.
very close!
todo: special handling for thesaurus (ie NBII/Bloom) metadata fields

pivot constrained to a List of specific attributes: studentId (record number), score, response.
This is the "lower half" of the return set (data).
now: on to the metadata header rows

Update version to 1.9.1. Add nrs ldap properties to configuration.

Now doing the dataquery/download in the FIRST skin's jsp rather than embedded in the Metacat servlet.
TODO: implement the very-custom data return format agreed upon by the FIRST team

add LDAP base to NRS skin properties

add UCNRS LDAP properties

Add date to log output

include pivot options for dataquery

Somehow log4j.properties is missing from head. Restoring it.

Introduce replication user. Use the fileutil writer methods instead of writing directly.

new datamanager feature!
Pivot a result set (rows to columns).
Handles simplest case:
-single id column (observation)
-single pivot column (pivot)

add date to log output

Use only one eml common stylesheet directory for all post 2.0.0 beta versions of eml. Point all eml versions to that directory in skin xml files.

Increase database.maximumConnections from 25 to 200

include NSF grant number

found more method that should be plural

removed duplicate variable settings

fixed path for sibling access