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# Date Author Comment
5682 12/01/2010 03:21 PM berkley

new client jar

5681 12/01/2010 03:06 PM berkley

fixed date problem

5678 12/01/2010 12:07 PM ben leinfelder

include busy spinner when loading search results

5677 12/01/2010 10:29 AM ben leinfelder

using div tags for the search results now (with some tables too)

5676 12/01/2010 10:06 AM ben leinfelder

commit before trying div-only resultset

5675 11/30/2010 05:44 PM ben leinfelder

hide/show search result details for each matched row.

5672 11/30/2010 03:34 PM ben leinfelder

-use a tab for search options
-search results are in their own container now
-jquery ui and semtools css share same corner radius
-removed form-based "link" in resultset xsl

5671 11/30/2010 03:32 PM berkley

new values for updated schemas

5670 11/30/2010 03:30 PM berkley

got getChecksum working. working on delete now. all tests in d1clienttest now pass

5669 11/30/2010 02:12 PM ben leinfelder

use jquery UI tabs to separate the Measurement criteria from E,C,P

5668 11/29/2010 04:44 PM ben leinfelder

-"Clear" button actually clears the form and refreshes the search results w/o constraints
-active domain check boxes are honored when refreshing active domain after selection is made in a different tree

5667 11/29/2010 03:49 PM ben leinfelder

"remember" selected/opened nodes when active domain is filtered on click. also using separate cookies for each tree so that it can remember it's state on page reload.

5666 11/23/2010 05:02 PM ben leinfelder

refresh the other trees with active domain when selection is made.
TODO: remember last selected node in the tree and open the tree to that node

5665 11/23/2010 04:18 PM ben leinfelder

asynchronously load search results after each tree selection event

5664 11/23/2010 11:54 AM ben leinfelder

add checkbox for active domain pruning on each tree.

5663 11/23/2010 09:34 AM ben leinfelder

prune the search tree - keep parents and children of matched nodes

5662 11/22/2010 06:34 PM ben leinfelder

set the selected concept as the value in the search field

5661 11/22/2010 04:37 PM ben leinfelder

remove bioportal search fields

5660 11/22/2010 04:25 PM ben leinfelder

include scroll bars for the jsTrees

5659 11/19/2010 04:42 PM ben leinfelder

no more aqua for search results

5658 11/19/2010 04:06 PM ben leinfelder

add search box for finding an entry in the tree

5657 11/19/2010 03:23 PM berkley

changes for new d1 schemas

5656 11/19/2010 03:06 PM ben leinfelder

include jsTree for navigating the ontology hierarchy when making class selections for the search

5653 11/18/2010 11:24 AM berkley

new common with exception that should have been in delete

5647 11/16/2010 11:34 AM berkley

removing old libs

5646 11/16/2010 11:32 AM berkley

switching to new client library

5645 11/16/2010 11:27 AM berkley

adding common jar to metacat

5644 11/15/2010 03:26 PM berkley

adding getChecksum method

5635 11/09/2010 02:47 PM ben leinfelder

comment out debugging alert

5634 11/09/2010 02:27 PM ben leinfelder

use SERVLET_URL not fred

5633 11/09/2010 12:47 PM ben leinfelder

use jQuery to build active domain selections

5632 11/08/2010 05:25 PM ben leinfelder

starting to filter by active domains. still request-based, but would like to make asynchronous calls when populating the fields.

5631 10/28/2010 02:14 PM berkley

fixing files I didn't mean to check in

5630 10/28/2010 02:11 PM berkley

fixed a couple bugs with dates and fixed a major bug where metacat was reading the entire document from the database everytime a DocumentImpl instance was created even though it didn't need to

5628 10/27/2010 10:49 AM berkley

updating system metadata query doc type

5627 10/26/2010 01:15 PM berkley

removed old api jar

5626 10/26/2010 01:06 PM berkley

new service api jar

5623 10/20/2010 11:02 AM berkley

new config changes

5618 10/15/2010 10:51 AM ben leinfelder

allow default style to be used for the registry (added login mapping)

5605 10/14/2010 11:05 AM berkley

new client jar

5604 10/07/2010 01:33 PM ben leinfelder

look up the active annotation classes

5603 10/07/2010 01:13 PM Duane Costa

Bug 3835 - design and implement OAI-PMH compliant harvest subsystem

Improve handling of 'eml:eml/dataset/publisher' element to 'dc:publisher' element crosswalk.

5602 10/07/2010 11:51 AM ben leinfelder

browse/search/madlib hybrid sample

5601 10/06/2010 02:55 PM ben leinfelder

use newer SBC-ish style for the default skin

5600 10/06/2010 11:46 AM ben leinfelder

include css classes for skins (like default and semtools) that use the "subGroup" class

5599 10/06/2010 11:05 AM ben leinfelder

use newer SBC-ish style for the default skin

5598 09/28/2010 03:11 PM ben leinfelder

correctly set the map location based on organizationScope

5597 09/28/2010 03:09 PM ben leinfelder

correctly set the organizationScope from the request value - filters the search results by location

5596 09/27/2010 05:24 PM ben leinfelder

not sure why this did not come up earlier when I stared upgrading some of the jar dependencies, but I've been having problems deploying Metacat because of a xerces error. upgrading to 2.7.1 fixed it - thinking the xml-apis and xerces jars need to be somewhat in lockstep with each other.

5594 09/23/2010 02:39 PM ben leinfelder

use <p> consistently when providing a tooltip for the full class URI

5593 09/23/2010 02:35 PM ben leinfelder

number of changes:
-list measurements across the screen under their observation
-use title attributes for full ontology class URI, only show full URI for the entity class since there is horizontal room
-make the annotation box more compact and intuitive for both screens (details and search results)

5592 09/23/2010 02:33 PM ben leinfelder

make DP title bold in result set

5591 09/23/2010 01:07 PM ben leinfelder

nest annotation groupings nicely for each obs/meas

5590 09/23/2010 12:40 PM ben leinfelder

include nesting borders

5589 09/23/2010 12:24 PM ben leinfelder

integrate Annotation in resultset better

5588 09/23/2010 12:12 PM ben leinfelder

place annotation information in the same cell as the data package title/id

5587 09/23/2010 11:56 AM ben leinfelder

include content in a wrapper div for margins

5586 09/23/2010 11:54 AM ben leinfelder

comment out debugging alert()

5585 09/23/2010 11:52 AM ben leinfelder

do not make hyperlinks extra bold

5584 09/23/2010 11:51 AM ben leinfelder

reduce white space

5583 09/23/2010 11:51 AM ben leinfelder

include some gray in the paragraphs

5581 09/23/2010 11:37 AM ben leinfelder

use "Myriad..." fonts, then cascade down to Arial, sans... Lifted from BioPortal L+F

5578 09/22/2010 05:00 PM ben leinfelder

only show that an annotation exists in the resultset, not the full details

5576 09/22/2010 11:23 AM ben leinfelder

make the header hyperlinks bold

5575 09/22/2010 11:07 AM ben leinfelder

reduce header font sizes

5574 09/22/2010 10:59 AM ben leinfelder

wrap content in div for margins
add bottom margin on header

5573 09/22/2010 10:58 AM ben leinfelder

include clearer font [size]
add leaf at right

5572 09/22/2010 10:42 AM berkley

new jar file

5571 09/22/2010 10:08 AM ben leinfelder

use light grey for backgrounds
dark grey for links

5570 09/22/2010 09:49 AM ben leinfelder

don't use green for links

5569 09/21/2010 04:50 PM ben leinfelder

include new graphic header for semtools skin.
adjust css to fit better

5567 09/21/2010 02:30 PM ben leinfelder

only surround main dataset with border to avoid a weird border artifact when displaying sub-groups of the eml package

5566 09/21/2010 02:29 PM ben leinfelder

include header/footer like in the old JS-based template

5565 09/21/2010 01:08 PM ben leinfelder

do away with the "eml-common.xsl" - it's not really worth it in terms of being able to customize for each skin

5564 09/21/2010 12:51 PM ben leinfelder

use sbclter css

5563 09/21/2010 12:34 PM ben leinfelder

use shared style sheets for rendering eml. this is sbclter/pisco-like

5562 09/21/2010 12:31 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5561 09/21/2010 12:31 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5560 09/21/2010 12:29 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5558 09/21/2010 11:03 AM ben leinfelder

remove duplicate "attributeindex" parameter

5548 09/17/2010 11:34 AM berkley

new service api jar

5546 09/16/2010 05:24 AM Duane Costa

Bug 3835 - design and implement OAI-PMH compliant harvest subsystem

Fix a bug in the EML to Dublin Core crosswalk XLSTs. First and last names were being concatenated. The fix is to place the space character inside an xsl:text element.

5544 09/08/2010 02:32 PM ben leinfelder

removing unused search pages (leftover from 'default' skin copy)

5543 09/07/2010 04:30 PM ben leinfelder

separate the class and the ontology from the the URI for easier reading. putting them in a table also helps

5542 09/07/2010 03:49 PM ben leinfelder

include links from annotation to the data package metadata

5541 09/07/2010 03:06 PM ben leinfelder

include stylesheet to display annotation document on it's own (in addition to within a resultset)

5540 09/07/2010 02:40 PM ben leinfelder

include the column name that the measurement is mapped to

5539 09/07/2010 11:39 AM ben leinfelder

list the currently registered ontologies (in case someone wants to unregister them?)

5538 09/07/2010 10:06 AM ben leinfelder

rearrange the ontology registration page - bioportal-hosted ontologies come first

5537 09/06/2010 04:50 PM ben leinfelder

include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.

5536 09/03/2010 04:53 PM ben leinfelder

include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.

5535 09/01/2010 02:19 PM ben leinfelder

include a page for [un]registering ontologies with the ontology manager in the semtools plugin

5534 08/31/2010 02:29 PM ben leinfelder

minor upgrade to commons-logging (1.0.3->1.0.4)

5533 08/30/2010 04:34 PM ben leinfelder

basic query can be issued and includes:
-match any/all
-from same observation
-for Entity, Characteristic, Standard, Protocol, Measurement

5532 08/27/2010 09:21 PM ben leinfelder

use same xercesImpl as geoserver (2.4)

5531 08/27/2010 07:28 PM ben leinfelder

upgrade to xalan 2.7 from 2.5.1 (geoserver was using 2.7 already)

5530 08/27/2010 02:59 PM ben leinfelder

upgrade commons-collections (3.2) and commons-lang (2.5) - avoid conflicts with semtools plugin that requires these newer jars.

5529 08/27/2010 02:29 PM ben leinfelder

upgrade the log4j jar - reduces the duplicate jars to wade though in the build process

5528 08/27/2010 02:24 PM ben leinfelder

don't include the semtools plugin in the default config

5527 08/27/2010 02:20 PM ben leinfelder

remove chad's local changes (server, db, etc) - but preserve the D1 config values that were added