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# Date Author Comment
5624 10/20/2010 11:17 AM berkley

updated all exception codes to match spec

5623 10/20/2010 11:02 AM berkley

new config changes

5622 10/20/2010 11:02 AM berkley

fixed task 729

5621 10/19/2010 09:33 AM berkley

fixed a bunch of small errors, did some reformatting, and fixed a bug that I thought was fixed last week

5620 10/15/2010 02:36 PM berkley
5619 10/15/2010 02:34 PM berkley

fixed redmine task 864. Metacat will now download an http:// referenced schema when a reference is put in the xml_catalog table.

5618 10/15/2010 10:51 AM ben leinfelder

allow default style to be used for the registry (added login mapping)

5617 10/14/2010 03:21 PM berkley

fixing redmine task 738

5616 10/14/2010 02:56 PM berkley

fixing trac bug 828

5611 10/14/2010 11:21 AM berkley

minor changes to crudservicetest

5610 10/14/2010 11:21 AM berkley

adding a test that I forgot to check in a while back

5608 10/14/2010 11:08 AM berkley

test for the profiler

5607 10/14/2010 11:07 AM berkley

profiler code for metacat

5606 10/14/2010 11:07 AM berkley

exception to throw when the sax parse should stop

5605 10/14/2010 11:05 AM berkley

new client jar

5604 10/07/2010 01:33 PM ben leinfelder

look up the active annotation classes

5603 10/07/2010 01:13 PM Duane Costa

Bug 3835 - design and implement OAI-PMH compliant harvest subsystem

Improve handling of 'eml:eml/dataset/publisher' element to 'dc:publisher' element crosswalk.

5602 10/07/2010 11:51 AM ben leinfelder

browse/search/madlib hybrid sample

5601 10/06/2010 02:55 PM ben leinfelder

use newer SBC-ish style for the default skin

5600 10/06/2010 11:46 AM ben leinfelder

include css classes for skins (like default and semtools) that use the "subGroup" class

5599 10/06/2010 11:05 AM ben leinfelder

use newer SBC-ish style for the default skin

5598 09/28/2010 03:11 PM ben leinfelder

correctly set the map location based on organizationScope

5597 09/28/2010 03:09 PM ben leinfelder

correctly set the organizationScope from the request value - filters the search results by location

5596 09/27/2010 05:24 PM ben leinfelder

not sure why this did not come up earlier when I stared upgrading some of the jar dependencies, but I've been having problems deploying Metacat because of a xerces error. upgrading to 2.7.1 fixed it - thinking the xml-apis and xerces jars need to be somewhat in lockstep with each other.

5595 09/23/2010 03:54 PM berkley

added notes on packages to upload with knb-mn

5594 09/23/2010 02:39 PM ben leinfelder

use <p> consistently when providing a tooltip for the full class URI

5593 09/23/2010 02:35 PM ben leinfelder

number of changes:
-list measurements across the screen under their observation
-use title attributes for full ontology class URI, only show full URI for the entity class since there is horizontal room
-make the annotation box more compact and intuitive for both screens (details and search results)

5592 09/23/2010 02:33 PM ben leinfelder

make DP title bold in result set

5591 09/23/2010 01:07 PM ben leinfelder

nest annotation groupings nicely for each obs/meas

5590 09/23/2010 12:40 PM ben leinfelder

include nesting borders

5589 09/23/2010 12:24 PM ben leinfelder

integrate Annotation in resultset better

5588 09/23/2010 12:12 PM ben leinfelder

place annotation information in the same cell as the data package title/id

5587 09/23/2010 11:56 AM ben leinfelder

include content in a wrapper div for margins

5586 09/23/2010 11:54 AM ben leinfelder

comment out debugging alert()

5585 09/23/2010 11:52 AM ben leinfelder

do not make hyperlinks extra bold

5584 09/23/2010 11:51 AM ben leinfelder

reduce white space

5583 09/23/2010 11:51 AM ben leinfelder

include some gray in the paragraphs

5582 09/23/2010 11:41 AM berkley

changed log labels per trac 843

5581 09/23/2010 11:37 AM ben leinfelder

use "Myriad..." fonts, then cascade down to Arial, sans... Lifted from BioPortal L+F

5578 09/22/2010 05:00 PM ben leinfelder

only show that an annotation exists in the resultset, not the full details

5577 09/22/2010 11:55 AM berkley

fixed bug 818

5576 09/22/2010 11:23 AM ben leinfelder

make the header hyperlinks bold

5575 09/22/2010 11:07 AM ben leinfelder

reduce header font sizes

5574 09/22/2010 10:59 AM ben leinfelder

wrap content in div for margins
add bottom margin on header

5573 09/22/2010 10:58 AM ben leinfelder

include clearer font [size]
add leaf at right

5572 09/22/2010 10:42 AM berkley

new jar file

5571 09/22/2010 10:08 AM ben leinfelder

use light grey for backgrounds
dark grey for links

5570 09/22/2010 09:49 AM ben leinfelder

don't use green for links

5569 09/21/2010 04:50 PM ben leinfelder

include new graphic header for semtools skin.
adjust css to fit better

5568 09/21/2010 03:56 PM berkley

updated the metacatpopulator to use the d1 eml parser to create system metadata in a smarter fashion.

5567 09/21/2010 02:30 PM ben leinfelder

only surround main dataset with border to avoid a weird border artifact when displaying sub-groups of the eml package

5566 09/21/2010 02:29 PM ben leinfelder

include header/footer like in the old JS-based template

5565 09/21/2010 01:08 PM ben leinfelder

do away with the "eml-common.xsl" - it's not really worth it in terms of being able to customize for each skin

5564 09/21/2010 12:51 PM ben leinfelder

use sbclter css

5563 09/21/2010 12:34 PM ben leinfelder

use shared style sheets for rendering eml. this is sbclter/pisco-like

5562 09/21/2010 12:31 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5561 09/21/2010 12:31 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5560 09/21/2010 12:29 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5559 09/21/2010 11:26 AM berkley

better log message

5558 09/21/2010 11:03 AM ben leinfelder

remove duplicate "attributeindex" parameter

5557 09/21/2010 10:47 AM berkley

more debugging for objectInfo problem

5556 09/20/2010 03:23 PM berkley

checking for a null objectformat

5555 09/20/2010 03:07 PM berkley

checking for a null objectformat

5554 09/20/2010 02:52 PM berkley

checking for a null objectformat

5553 09/20/2010 02:49 PM berkley

backtracking

5552 09/20/2010 02:40 PM berkley

add some error output

5551 09/20/2010 02:38 PM berkley

add some error output

5550 09/20/2010 02:06 PM berkley

added a check for bad data into listObjects

5549 09/17/2010 04:29 PM berkley

commented out a println

5548 09/17/2010 11:34 AM berkley

new service api jar

5547 09/17/2010 10:48 AM berkley

updated DB scripts for D1 schemas

5546 09/16/2010 05:24 AM Duane Costa

Bug 3835 - design and implement OAI-PMH compliant harvest subsystem

Fix a bug in the EML to Dublin Core crosswalk XLSTs. First and last names were being concatenated. The fix is to place the space character inside an xsl:text element.

5545 09/14/2010 01:28 PM berkley

changed improper use of getFS() to a /. getFS() should never be used with a URL since it will return \ on windows which is not a valid separator in a URL.

5544 09/08/2010 02:32 PM ben leinfelder

removing unused search pages (leftover from 'default' skin copy)

5543 09/07/2010 04:30 PM ben leinfelder

separate the class and the ontology from the the URI for easier reading. putting them in a table also helps

5542 09/07/2010 03:49 PM ben leinfelder

include links from annotation to the data package metadata

5541 09/07/2010 03:06 PM ben leinfelder

include stylesheet to display annotation document on it's own (in addition to within a resultset)

5540 09/07/2010 02:40 PM ben leinfelder

include the column name that the measurement is mapped to

5539 09/07/2010 11:39 AM ben leinfelder

list the currently registered ontologies (in case someone wants to unregister them?)

5538 09/07/2010 10:06 AM ben leinfelder

rearrange the ontology registration page - bioportal-hosted ontologies come first

5537 09/06/2010 04:50 PM ben leinfelder

include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.

5536 09/03/2010 04:53 PM ben leinfelder

include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.

5535 09/01/2010 02:19 PM ben leinfelder

include a page for [un]registering ontologies with the ontology manager in the semtools plugin

5534 08/31/2010 02:29 PM ben leinfelder

minor upgrade to commons-logging (1.0.3->1.0.4)

5533 08/30/2010 04:34 PM ben leinfelder

basic query can be issued and includes:
-match any/all
-from same observation
-for Entity, Characteristic, Standard, Protocol, Measurement

5532 08/27/2010 09:21 PM ben leinfelder

use same xercesImpl as geoserver (2.4)

5531 08/27/2010 07:28 PM ben leinfelder

upgrade to xalan 2.7 from 2.5.1 (geoserver was using 2.7 already)

5530 08/27/2010 02:59 PM ben leinfelder

upgrade commons-collections (3.2) and commons-lang (2.5) - avoid conflicts with semtools plugin that requires these newer jars.

5529 08/27/2010 02:29 PM ben leinfelder

upgrade the log4j jar - reduces the duplicate jars to wade though in the build process

5528 08/27/2010 02:24 PM ben leinfelder

don't include the semtools plugin in the default config

5527 08/27/2010 02:20 PM ben leinfelder

remove chad's local changes (server, db, etc) - but preserve the D1 config values that were added

5526 08/27/2010 12:27 PM berkley

new values for mets namespace

5525 08/27/2010 11:27 AM berkley

added METS schemas to db scripts

5524 08/27/2010 11:20 AM berkley

added METS schema to the catalog

5523 08/27/2010 11:09 AM berkley

moved the dataone types to the metacat.properties file

5522 08/27/2010 08:27 AM berkley

updated for new dataone jars

5521 08/27/2010 08:25 AM berkley

changes to work with new dataone jars

5520 08/27/2010 08:25 AM berkley

removing old service api jar

5519 08/27/2010 08:24 AM berkley

new dataone jars

5518 08/26/2010 05:10 PM ben leinfelder

include MetacatHandlerPlugin interface so that other projects [semtools] can extend the actions handled by Metcat without editing the codebase directly. The SemtoolsPlugin is the prototype for this and can be registered using the Metacat admin interface. Note that the plugin implementation class and supporting jars must be included in the webapp in order for the request to be handled correctly (the semtools build is injecting these as part of it's build process).