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# Date Author Comment
5642 11/15/2010 11:47 AM berkley

remove temp files after multipart read

5641 11/15/2010 10:57 AM berkley

removing backup files

5640 11/15/2010 10:57 AM berkley

got the streaming mime multipart working

5639 11/12/2010 04:10 PM berkley

still working on mmp stream parsing

5638 11/10/2010 03:59 PM berkley

working on integrating streaming mmp into resourceHandler

5637 11/10/2010 03:25 PM berkley

more work on streaming mmp support

5636 11/09/2010 04:00 PM berkley

getting closer to a non-memory bound solution for mime multipart de/encoding

5635 11/09/2010 02:47 PM ben leinfelder

comment out debugging alert

5634 11/09/2010 02:27 PM ben leinfelder

use SERVLET_URL not fred

5633 11/09/2010 12:47 PM ben leinfelder

use jQuery to build active domain selections

5632 11/08/2010 05:25 PM ben leinfelder

starting to filter by active domains. still request-based, but would like to make asynchronous calls when populating the fields.

5631 10/28/2010 02:14 PM berkley

fixing files I didn't mean to check in

5630 10/28/2010 02:11 PM berkley

fixed a couple bugs with dates and fixed a major bug where metacat was reading the entire document from the database everytime a DocumentImpl instance was created even though it didn't need to

5629 10/27/2010 10:51 AM berkley

changes for dataone .5 schema updates

5628 10/27/2010 10:49 AM berkley

updating system metadata query doc type

5627 10/26/2010 01:15 PM berkley

removed old api jar

5626 10/26/2010 01:06 PM berkley

new service api jar

5625 10/21/2010 09:53 AM berkley

changed property name of the dataone_schema tag. fixed one hard coded bug

5624 10/20/2010 11:17 AM berkley

updated all exception codes to match spec

5623 10/20/2010 11:02 AM berkley

new config changes

5622 10/20/2010 11:02 AM berkley

fixed task 729

5621 10/19/2010 09:33 AM berkley

fixed a bunch of small errors, did some reformatting, and fixed a bug that I thought was fixed last week

5620 10/15/2010 02:36 PM berkley
5619 10/15/2010 02:34 PM berkley

fixed redmine task 864. Metacat will now download an http:// referenced schema when a reference is put in the xml_catalog table.

5618 10/15/2010 10:51 AM ben leinfelder

allow default style to be used for the registry (added login mapping)

5617 10/14/2010 03:21 PM berkley

fixing redmine task 738

5616 10/14/2010 02:56 PM berkley

fixing trac bug 828

5611 10/14/2010 11:21 AM berkley

minor changes to crudservicetest

5610 10/14/2010 11:21 AM berkley

adding a test that I forgot to check in a while back

5608 10/14/2010 11:08 AM berkley

test for the profiler

5607 10/14/2010 11:07 AM berkley

profiler code for metacat

5606 10/14/2010 11:07 AM berkley

exception to throw when the sax parse should stop

5605 10/14/2010 11:05 AM berkley

new client jar

5604 10/07/2010 01:33 PM ben leinfelder

look up the active annotation classes

5603 10/07/2010 01:13 PM Duane Costa

Bug 3835 - design and implement OAI-PMH compliant harvest subsystem

Improve handling of 'eml:eml/dataset/publisher' element to 'dc:publisher' element crosswalk.

5602 10/07/2010 11:51 AM ben leinfelder

browse/search/madlib hybrid sample

5601 10/06/2010 02:55 PM ben leinfelder

use newer SBC-ish style for the default skin

5600 10/06/2010 11:46 AM ben leinfelder

include css classes for skins (like default and semtools) that use the "subGroup" class

5599 10/06/2010 11:05 AM ben leinfelder

use newer SBC-ish style for the default skin

5598 09/28/2010 03:11 PM ben leinfelder

correctly set the map location based on organizationScope

5597 09/28/2010 03:09 PM ben leinfelder

correctly set the organizationScope from the request value - filters the search results by location

5596 09/27/2010 05:24 PM ben leinfelder

not sure why this did not come up earlier when I stared upgrading some of the jar dependencies, but I've been having problems deploying Metacat because of a xerces error. upgrading to 2.7.1 fixed it - thinking the xml-apis and xerces jars need to be somewhat in lockstep with each other.

5595 09/23/2010 03:54 PM berkley

added notes on packages to upload with knb-mn

5594 09/23/2010 02:39 PM ben leinfelder

use <p> consistently when providing a tooltip for the full class URI

5593 09/23/2010 02:35 PM ben leinfelder

number of changes:
-list measurements across the screen under their observation
-use title attributes for full ontology class URI, only show full URI for the entity class since there is horizontal room
-make the annotation box more compact and intuitive for both screens (details and search results)

5592 09/23/2010 02:33 PM ben leinfelder

make DP title bold in result set

5591 09/23/2010 01:07 PM ben leinfelder

nest annotation groupings nicely for each obs/meas

5590 09/23/2010 12:40 PM ben leinfelder

include nesting borders

5589 09/23/2010 12:24 PM ben leinfelder

integrate Annotation in resultset better

5588 09/23/2010 12:12 PM ben leinfelder

place annotation information in the same cell as the data package title/id

5587 09/23/2010 11:56 AM ben leinfelder

include content in a wrapper div for margins

5586 09/23/2010 11:54 AM ben leinfelder

comment out debugging alert()

5585 09/23/2010 11:52 AM ben leinfelder

do not make hyperlinks extra bold

5584 09/23/2010 11:51 AM ben leinfelder

reduce white space

5583 09/23/2010 11:51 AM ben leinfelder

include some gray in the paragraphs

5582 09/23/2010 11:41 AM berkley

changed log labels per trac 843

5581 09/23/2010 11:37 AM ben leinfelder

use "Myriad..." fonts, then cascade down to Arial, sans... Lifted from BioPortal L+F

5578 09/22/2010 05:00 PM ben leinfelder

only show that an annotation exists in the resultset, not the full details

5577 09/22/2010 11:55 AM berkley

fixed bug 818

5576 09/22/2010 11:23 AM ben leinfelder

make the header hyperlinks bold

5575 09/22/2010 11:07 AM ben leinfelder

reduce header font sizes

5574 09/22/2010 10:59 AM ben leinfelder

wrap content in div for margins
add bottom margin on header

5573 09/22/2010 10:58 AM ben leinfelder

include clearer font [size]
add leaf at right

5572 09/22/2010 10:42 AM berkley

new jar file

5571 09/22/2010 10:08 AM ben leinfelder

use light grey for backgrounds
dark grey for links

5570 09/22/2010 09:49 AM ben leinfelder

don't use green for links

5569 09/21/2010 04:50 PM ben leinfelder

include new graphic header for semtools skin.
adjust css to fit better

5568 09/21/2010 03:56 PM berkley

updated the metacatpopulator to use the d1 eml parser to create system metadata in a smarter fashion.

5567 09/21/2010 02:30 PM ben leinfelder

only surround main dataset with border to avoid a weird border artifact when displaying sub-groups of the eml package

5566 09/21/2010 02:29 PM ben leinfelder

include header/footer like in the old JS-based template

5565 09/21/2010 01:08 PM ben leinfelder

do away with the "eml-common.xsl" - it's not really worth it in terms of being able to customize for each skin

5564 09/21/2010 12:51 PM ben leinfelder

use sbclter css

5563 09/21/2010 12:34 PM ben leinfelder

use shared style sheets for rendering eml. this is sbclter/pisco-like

5562 09/21/2010 12:31 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5561 09/21/2010 12:31 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5560 09/21/2010 12:29 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5559 09/21/2010 11:26 AM berkley

better log message

5558 09/21/2010 11:03 AM ben leinfelder

remove duplicate "attributeindex" parameter

5557 09/21/2010 10:47 AM berkley

more debugging for objectInfo problem

5556 09/20/2010 03:23 PM berkley

checking for a null objectformat

5555 09/20/2010 03:07 PM berkley

checking for a null objectformat

5554 09/20/2010 02:52 PM berkley

checking for a null objectformat

5553 09/20/2010 02:49 PM berkley

backtracking

5552 09/20/2010 02:40 PM berkley

add some error output

5551 09/20/2010 02:38 PM berkley

add some error output

5550 09/20/2010 02:06 PM berkley

added a check for bad data into listObjects

5549 09/17/2010 04:29 PM berkley

commented out a println

5548 09/17/2010 11:34 AM berkley

new service api jar

5547 09/17/2010 10:48 AM berkley

updated DB scripts for D1 schemas

5546 09/16/2010 05:24 AM Duane Costa

Bug 3835 - design and implement OAI-PMH compliant harvest subsystem

Fix a bug in the EML to Dublin Core crosswalk XLSTs. First and last names were being concatenated. The fix is to place the space character inside an xsl:text element.

5545 09/14/2010 01:28 PM berkley

changed improper use of getFS() to a /. getFS() should never be used with a URL since it will return \ on windows which is not a valid separator in a URL.

5544 09/08/2010 02:32 PM ben leinfelder

removing unused search pages (leftover from 'default' skin copy)

5543 09/07/2010 04:30 PM ben leinfelder

separate the class and the ontology from the the URI for easier reading. putting them in a table also helps

5542 09/07/2010 03:49 PM ben leinfelder

include links from annotation to the data package metadata

5541 09/07/2010 03:06 PM ben leinfelder

include stylesheet to display annotation document on it's own (in addition to within a resultset)

5540 09/07/2010 02:40 PM ben leinfelder

include the column name that the measurement is mapped to

5539 09/07/2010 11:39 AM ben leinfelder

list the currently registered ontologies (in case someone wants to unregister them?)

5538 09/07/2010 10:06 AM ben leinfelder

rearrange the ontology registration page - bioportal-hosted ontologies come first

5537 09/06/2010 04:50 PM ben leinfelder

include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.

5536 09/03/2010 04:53 PM ben leinfelder

include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.