Revision 4738
Added by walbridge almost 16 years ago
| register-dataset.cgi | ||
|---|---|---|
| 63 | 63 |
my $skinsDir = "${workingDirectory}/../style/skins";
|
| 64 | 64 |
my $templatesDir = abs_path("${workingDirectory}/../style/common/templates");
|
| 65 | 65 |
my $tempDir = $properties->getProperty('application.tempDir');
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| 66 |
my $dataDir = $properties->getProperty('application.datafilepath');
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|
| 66 | 67 |
|
| 67 | 68 |
# url configuration |
| 68 | 69 |
my $server = $properties->splitToTree(qr/\./, 'server'); |
| ... | ... | |
| 898 | 899 |
my $fileName = param("uploadname_$fileNum");
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| 899 | 900 |
my $contentType = param("uploadtype_$fileNum");
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| 900 | 901 |
my $filePerm = param("uploadperm_$fileNum");
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| 902 |
my $docid; |
|
| 903 |
my $outFile; |
|
| 901 | 904 |
my $cleanName = $fileName; |
| 902 | 905 |
|
| 903 |
# normalize input filenames; Windows filenames include full paths |
|
| 904 |
$cleanName =~ s/.*[\/\\](.*)/$1/; |
|
| 906 |
# process an _existing_ data file, which is already within Metacat. |
|
| 907 |
if ($fileHash =~ /ondisk/) {
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| 908 |
my $finfo = $fileHash; |
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| 909 |
$finfo =~ s/ondisk://g; |
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| 910 |
(my $docid, $fileHash) = split(":", $finfo);
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|
| 911 |
$outFile = $dataDir . "/" . $docid; |
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| 912 |
} else {
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| 913 |
# normalize input filenames; Windows filenames include full paths |
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| 914 |
$cleanName =~ s/.*[\/\\](.*)/$1/; |
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| 915 |
$outFile = $tempDir . "/" . $cleanName; |
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| 916 |
} |
|
| 917 |
debug("Registry: Reading file from disk: $outFile");
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|
| 905 | 918 |
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| 906 |
my $outFile = $tempDir . "/" . $cleanName; |
|
| 907 |
#debug("Reading file from disk: $outFile");
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| 908 |
|
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| 909 | 919 |
my $fileSize = stat($outFile)->size; |
| 910 | 920 |
if ($fileSize == 0) {
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| 911 | 921 |
push(@errorMessages, "file $fileName is zero bytes!"); |
| ... | ... | |
| 916 | 926 |
my $session = CGI::Session->load(); |
| 917 | 927 |
if ($session->is_empty) {
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| 918 | 928 |
push(@errorMessages, "Must be logged in to upload files."); |
| 919 |
debug("Not logged in, cannot upload files.");
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| 929 |
debug("Registry: Not logged in, cannot upload files.");
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| 920 | 930 |
return 0; |
| 921 | 931 |
} |
| 922 | 932 |
|
| 923 |
my $docid = newAccessionNumber($config->{'scope'});
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| 924 |
my $uploadReturn = uploadData($outFile, $docid); |
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| 925 |
if (!$uploadReturn) {
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| 926 |
debug("Registry: uploading the data failed.");
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|
| 933 |
if ($fileHash !~ /ondisk/) {
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| 934 |
$docid = newAccessionNumber($config->{'scope'});
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| 935 |
my $uploadReturn = uploadData($outFile, $docid); |
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| 936 |
if (!$uploadReturn) {
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| 937 |
debug("Registry: uploading the data failed.");
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| 938 |
} |
|
| 927 | 939 |
} |
| 928 |
|
|
| 929 | 940 |
my $entityid = $fileHash."001"; |
| 930 | 941 |
my $distribid = $fileHash."002"; |
| 931 | 942 |
|
| ... | ... | |
| 987 | 998 |
sub writeFile {
|
| 988 | 999 |
my $fileName = shift; |
| 989 | 1000 |
my $fileData; |
| 1001 |
my $fileName = shift; |
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| 990 | 1002 |
my $length = 0; |
| 991 | 1003 |
my $buffer; |
| 1004 |
|
|
| 992 | 1005 |
my $cleanName = $fileName; |
| 993 | 1006 |
|
| 994 | 1007 |
# normalize input filenames; Windows filenames include full paths |
| ... | ... | |
| 1008 | 1021 |
open(OUT,">$outputName") or die "Could not open: $!"; |
| 1009 | 1022 |
print OUT $fileData; |
| 1010 | 1023 |
close(OUT); |
| 1011 |
debug("Registry: output is: $outputName, length is: $length");
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|
| 1024 |
debug("Registry: writing output, result is: $outputName");
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| 1012 | 1025 |
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| 1013 | 1026 |
return ($outputName, $digest); |
| 1014 | 1027 |
} |
| 1015 | 1028 |
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| 1016 | 1029 |
sub deleteFile {
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| 1017 | 1030 |
my $input = shift; |
| 1018 |
my $fileName = $tempDir . "/" . $input; |
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| 1031 |
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| 1032 |
if ($input =~ /ondisk/) {
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| 1033 |
my $docid = $input; |
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| 1034 |
$docid =~ s/ondisk://g; |
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| 1035 |
# XXX FIXME once ondisk support is enabled |
|
| 1036 |
#my $response = $metacat->delete($docid); |
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| 1037 |
my $response; |
|
| 1038 |
if (!$response) {
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| 1039 |
my $msg = $metacat->getMessage(); |
|
| 1040 |
push(@errorMessages, "Failed to delete existing file. Error was: $msg\n"); |
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| 1041 |
debug("Registry: Delete -- Error is: $msg");
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| 1042 |
} else {
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| 1043 |
debug("Registry: Delete -- Success! Removed docid $docid");
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| 1044 |
} |
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| 1045 |
} else {
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| 1046 |
my $fileName = $tempDir . "/" . $input; |
|
| 1019 | 1047 |
|
| 1020 |
if (-e $fileName) {
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| 1021 |
unlink $fileName or |
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| 1022 |
debug("Registry: failed to delete file $fileName.");
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| 1023 |
} else {
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|
| 1024 |
debug("Registry: unable to find file $fileName");
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|
| 1048 |
if (-e $fileName) {
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| 1049 |
unlink $fileName or |
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| 1050 |
debug("Registry: failed to delete file $fileName.");
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| 1051 |
} else {
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| 1052 |
debug("Registry: unable to find file $fileName");
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|
| 1053 |
} |
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| 1054 |
if (!-e $fileName) {
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| 1055 |
debug("Registry: successfully deleted $fileName");
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| 1056 |
} |
|
| 1025 | 1057 |
} |
| 1026 |
if (!-e $fileName) {
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| 1027 |
debug("Registry: successfully deleted $fileName");
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|
| 1028 |
} |
|
| 1029 | 1058 |
} |
| 1030 | 1059 |
|
| 1031 | 1060 |
sub uploadData {
|
| ... | ... | |
| 2475 | 2504 |
dontOccur($doc, "./pubPlace", "pubPlace"); |
| 2476 | 2505 |
dontOccur($doc, "./project", "project"); |
| 2477 | 2506 |
|
| 2478 |
############ Code for checking ACL ##################### |
|
| 2479 |
dontOccur($doc, "//access/deny", "access/deny"); |
|
| 2507 |
# Code for checking ACL: with EML 2.1, we should only look within the top-level elements |
|
| 2480 | 2508 |
|
| 2481 |
$results = $doc->findnodes('//access/allow');
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|
| 2509 |
dontOccur($doc, "/eml:eml/access/deny", "access/deny"); |
|
| 2510 |
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|
| 2511 |
$results = $doc->findnodes('/eml:eml/access/allow');
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|
| 2482 | 2512 |
my $accessError = 0; |
| 2483 | 2513 |
|
| 2484 | 2514 |
foreach $node ($results->get_nodelist) {
|
| ... | ... | |
| 2530 | 2560 |
} |
| 2531 | 2561 |
|
| 2532 | 2562 |
# handle otherEntity objects, by populating the relevant file form elements |
| 2533 |
$results = $doc->findnodes('./otherEntity');
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|
| 2563 |
$results = $doc->findnodes('//otherEntity/physical');
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|
| 2564 |
my $upCount = 0; |
|
| 2534 | 2565 |
foreach $node ($results->get_nodelist) {
|
| 2535 |
# entityName |
|
| 2536 |
# physical/ |
|
| 2537 |
# size |
|
| 2538 |
# authentication |
|
| 2539 |
# dataformat/externallyDefinedFormat/formatName |
|
| 2540 |
# distribution/online |
|
| 2541 |
# distribution/access |
|
| 2566 |
my $distUrl = findValue($node, 'distribution/online/url'); |
|
| 2567 |
debug("Registry: found distUrl of value $distUrl.");
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|
| 2568 |
if ($distUrl !~ /^ecogrid/) {
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|
| 2569 |
my $error = "The file URL referenced is not a local resource and has been changed outside the registry. Please use Morpho to edit this document."; |
|
| 2570 |
push(@errorMessages, $error."\n"); |
|
| 2571 |
} else {
|
|
| 2572 |
# have a file with a ecogrid distUrl, use this to set up the file parameters |
|
| 2573 |
$distUrl =~ s/ecogrid:\/\/knb\///g; |
|
| 2574 |
my $accessResults = $doc->findnodes('distribution/access/allow');
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|
| 2575 |
my $accessRule = 'private'; |
|
| 2576 |
|
|
| 2577 |
foreach $node ($accessResults->get_nodelist) {
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|
| 2578 |
my @children = $node->childNodes; |
|
| 2579 |
my $permission = ""; |
|
| 2580 |
my $principal = ""; |
|
| 2581 |
for (my $i = 0; $i < scalar(@children); $i++) {
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|
| 2582 |
my $child = $children[$i]; |
|
| 2583 |
if ($child->nodeName eq 'principal') {
|
|
| 2584 |
$principal = $child->textContent(); |
|
| 2585 |
} elsif ($child->nodeName eq 'permission') {
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|
| 2586 |
$permission = $child->textContent(); |
|
| 2587 |
} |
|
| 2588 |
} |
|
| 2589 |
|
|
| 2590 |
if ($principal eq 'public' && $permission eq 'read') {
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|
| 2591 |
$accessRule = 'public'; |
|
| 2592 |
} |
|
| 2593 |
} |
|
| 2594 |
# overload the name with the ondisk status, the docid and the SHA1 sum |
|
| 2595 |
$$templateVars{"upload_$upCount"} = "ondisk:$distUrl:" . findValue($node, 'authentication');
|
|
| 2596 |
$$templateVars{"uploadname_$upCount"} = findValue($node, 'objectName');
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|
| 2597 |
$$templateVars{"uploadtype_$upCount"} = findValue($node, 'dataFormat/externallyDefinedFormat/formatName');
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|
| 2598 |
$$templateVars{"uploadperm_$upCount"} = $accessRule;
|
|
| 2599 |
debug("Registry: setting upload data: " . $$templateVars{"upload_$upCount"} . ", " . $$templateVars{"uploadname_$upCount"} . ", " . $$templateVars{"uploadtype_$upCount"} . ", " . $$templateVars{"uploadperm_$upCount"});
|
|
| 2600 |
$upCount++; |
|
| 2601 |
} |
|
| 2542 | 2602 |
} |
| 2603 |
if ($upCount > 0) {
|
|
| 2604 |
$$templateVars{"upCount"} = $upCount;
|
|
| 2605 |
} |
|
| 2606 |
|
|
| 2543 | 2607 |
dontOccur($doc, "./dataTable", "dataTable"); |
| 2544 | 2608 |
dontOccur($doc, "./spatialRaster", "spatialRaster"); |
| 2545 | 2609 |
dontOccur($doc, "./spatialVector", "spatialVector"); |
| ... | ... | |
| 4014 | 4078 |
|
| 4015 | 4079 |
my $result = $node->findnodes("$value");
|
| 4016 | 4080 |
if ($result->size > 0) {
|
| 4081 |
debug("Registry: error trying to find $value, $errVal.");
|
|
| 4017 | 4082 |
$error ="One of the following tags found: $errVal. Please use Morpho to edit this document"; |
| 4018 | 4083 |
push(@errorMessages, $error."\n"); |
| 4019 | 4084 |
} |
| ... | ... | |
| 4046 | 4111 |
|
| 4047 | 4112 |
################################################################################ |
| 4048 | 4113 |
# |
| 4049 |
# convert coord to degrees, minutes and seconds form. |
|
| 4050 |
# |
|
| 4051 |
################################################################################ |
|
| 4052 |
#sub convertCoord {
|
|
| 4053 |
# my $wx = shift; |
|
| 4054 |
# print $deg." ".$min." ".$sec; |
|
| 4055 |
# print "\n"; |
|
| 4056 |
#} |
|
| 4057 |
|
|
| 4058 |
|
|
| 4059 |
################################################################################ |
|
| 4060 |
# |
|
| 4061 | 4114 |
# print redirect html code |
| 4062 | 4115 |
# |
| 4063 | 4116 |
################################################################################ |
Also available in: Unified diff
Further fixes for allowing editing with otherEntity objects, completed deserialization and copying of file metadata from existing data objects (Bug #3319). Still needs more work.