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Revision 5537

Added by ben leinfelder about 14 years ago

include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.

View differences:

ontologies.jsp
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<%@ page language="java"%>
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<%@page import="org.ecoinformatics.sms.ontology.bioportal.OntologyService,org.ecoinformatics.sms.ontology.bioportal.OntologyBean,java.util.List"%>
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<%
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/**
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 *
......
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<%@ include file="../../common/common-settings.jsp"%>


  		




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<%@ include file="../../common/configure-check.jsp"%>


  		




  
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<%


  		




  
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	// construct the drop down and the lookup key for the available ontologies


  		




  
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	StringBuffer dropDown = new StringBuffer();


  		




  
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	List<OntologyBean> beans = OntologyService.getInstance().getOntologyBeans();


  		




  
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	for (OntologyBean bean: beans) {


  		




  
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		dropDown.append("<option value='");


  		




  
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		dropDown.append(bean.getId());


  		




  
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		dropDown.append("'>");


  		




  
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		dropDown.append(bean.getDisplayLabel());


  		




  
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		dropDown.append("</option>");


  		




  
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	}


  		




  
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%>


  		




  
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<html>


  		




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<head>


  		




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<title>Semantic search</title>


  		




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<link rel="stylesheet" type="text/css" href="<%=STYLE_SKINS_URL%>/semtools/semtools.css">


  		




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<script type="text/javascript"


  		




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	src="<%=STYLE_SKINS_URL%>/semtools/search.js"></script>


  		




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<script type="text/javascript">


  		




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                    	    // Set defaults for this installation


  		




  ......




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	</table>


  		




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</form>


  		




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<h2>Available BioPortal Ontologies</h2>


  		




  
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<form method="POST" action="<%=SERVLET_URL%>" target="_top" id="bioportalRegistrationForm" name="bioportalRegistrationForm" ">


  		




  
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	<input name="qformat" value="semtools" type="hidden" />


  		




  
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	<table>


  		




  
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		<tr>


  		




  
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			<td>Action:</td>


  		




  
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			<td>


  		




  
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				<select name="action" id="action">


  		




  
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					<option value="registerOntology">Register Ontology</option>


  		




  
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					<option value="unregisterOntology">Unregister Ontology</option>


  		




  
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				</select>


  		




  
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			</td>


  		




  
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		</tr>


  		




  
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		<tr>


  		




  
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			<td>Ontology:</td>


  		




  
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			<td>


  		




  
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				<select name='id' id='id'>


  		




  
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					<%=dropDown.toString()%>


  		




  
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				</select>


  		




  
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			</td>


  		




  
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		</tr>


  		




  
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		<tr>


  		




  
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			<td colspan="2"><input type="submit" value="Submit"/></td>


  		




  
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		</tr>


  		




  
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	</table>


  		




  
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</form>


  		




  
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<h2>Ontology search (BioPortal)</h2>


  		




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<p>Ontologies can be located in BioPortal and then registered with Metacat. Use this search interface to find appropriate ontologies.</p>


  		




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<div id="bp_quick_jump"></div>


  		












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