Revision 5633
Added by ben leinfelder about 14 years ago
| index.jsp | ||
|---|---|---|
| 1 | 1 |
<%@ page language="java"%> |
| 2 |
<%@page import="java.util.List"%> |
|
| 3 |
<%@page import="java.util.ArrayList"%> |
|
| 4 |
<%@page import="org.ecoinformatics.sms.SMS"%> |
|
| 5 |
<%@page import="org.ecoinformatics.sms.ontology.OntologyClass"%> |
|
| 6 |
|
|
| 7 | 2 |
<% |
| 8 | 3 |
/** |
| 9 | 4 |
* |
| ... | ... | |
| 29 | 24 |
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA |
| 30 | 25 |
*/ |
| 31 | 26 |
%> |
| 32 |
<% |
|
| 33 | 27 |
|
| 34 |
//harvest parameters |
|
| 35 |
String[] entityParam = request.getParameterValues("entity");
|
|
| 36 |
String[] characteristicParam = request.getParameterValues("characteristic");
|
|
| 37 |
String[] standardParam = request.getParameterValues("standard");
|
|
| 38 |
String[] protocolParam = request.getParameterValues("protocol");
|
|
| 39 |
String[] measurementParam = request.getParameterValues("measurement");
|
|
| 40 |
|
|
| 41 |
List<OntologyClass> activeEntities = new ArrayList<OntologyClass>(); |
|
| 42 |
List<OntologyClass> activeCharacteristics = new ArrayList<OntologyClass>(); |
|
| 43 |
List<OntologyClass> activeStandards = new ArrayList<OntologyClass>(); |
|
| 44 |
List<OntologyClass> activeProtocols = new ArrayList<OntologyClass>(); |
|
| 45 |
List<OntologyClass> activeMeasurements = new ArrayList<OntologyClass>(); |
|
| 46 |
|
|
| 47 |
// Entity |
|
| 48 |
if (entityParam != null) {
|
|
| 49 |
for (String entityString: entityParam) {
|
|
| 50 |
OntologyClass e = new OntologyClass(entityString); |
|
| 51 |
activeEntities.add(e); |
|
| 52 |
} |
|
| 53 |
} |
|
| 54 |
// Characteristic |
|
| 55 |
if (characteristicParam != null) {
|
|
| 56 |
for (String classString: characteristicParam) {
|
|
| 57 |
OntologyClass c = new OntologyClass(classString); |
|
| 58 |
activeCharacteristics.add(c); |
|
| 59 |
} |
|
| 60 |
} |
|
| 61 |
// Standard |
|
| 62 |
if (standardParam != null) {
|
|
| 63 |
for (String classString: standardParam) {
|
|
| 64 |
OntologyClass c = new OntologyClass(classString); |
|
| 65 |
activeStandards.add(c); |
|
| 66 |
} |
|
| 67 |
} |
|
| 68 |
// Protocol |
|
| 69 |
if (protocolParam != null) {
|
|
| 70 |
for (String classString: protocolParam) {
|
|
| 71 |
OntologyClass c = new OntologyClass(classString); |
|
| 72 |
activeProtocols.add(c); |
|
| 73 |
} |
|
| 74 |
} |
|
| 75 |
// Measurement |
|
| 76 |
// TODO: implement measurement expansion |
|
| 77 |
|
|
| 78 |
// construct the selection fields for existing annotations |
|
| 79 |
// Entity |
|
| 80 |
StringBuffer entityOptions = new StringBuffer(); |
|
| 81 |
List<OntologyClass> entities = SMS.getInstance().getAnnotationManager().getActiveEntities(activeCharacteristics, activeStandards); |
|
| 82 |
for (OntologyClass oc: entities) {
|
|
| 83 |
entityOptions.append("<option ");
|
|
| 84 |
entityOptions.append("title='");
|
|
| 85 |
entityOptions.append(oc.getURI()); |
|
| 86 |
entityOptions.append("' ");
|
|
| 87 |
entityOptions.append("value='");
|
|
| 88 |
entityOptions.append(oc.getURI()); |
|
| 89 |
entityOptions.append("'");
|
|
| 90 |
entityOptions.append(">");
|
|
| 91 |
entityOptions.append(oc.getName()); |
|
| 92 |
entityOptions.append("</option>");
|
|
| 93 |
} |
|
| 94 |
// Characteristic |
|
| 95 |
StringBuffer characteristicOptions = new StringBuffer(); |
|
| 96 |
List<OntologyClass> characteristics = SMS.getInstance().getAnnotationManager().getActiveCharacteristics(activeEntities, activeStandards); |
|
| 97 |
for (OntologyClass oc: characteristics) {
|
|
| 98 |
characteristicOptions.append("<option ");
|
|
| 99 |
characteristicOptions.append("title='");
|
|
| 100 |
characteristicOptions.append(oc.getURI()); |
|
| 101 |
characteristicOptions.append("' ");
|
|
| 102 |
characteristicOptions.append("value='");
|
|
| 103 |
characteristicOptions.append(oc.getURI()); |
|
| 104 |
characteristicOptions.append("'");
|
|
| 105 |
characteristicOptions.append(">");
|
|
| 106 |
characteristicOptions.append(oc.getName()); |
|
| 107 |
characteristicOptions.append("</option>");
|
|
| 108 |
} |
|
| 109 |
// Standard |
|
| 110 |
StringBuffer standardOptions = new StringBuffer(); |
|
| 111 |
List<OntologyClass> standards = SMS.getInstance().getAnnotationManager().getActiveStandards(activeEntities, activeCharacteristics); |
|
| 112 |
for (OntologyClass oc: standards) {
|
|
| 113 |
standardOptions.append("<option ");
|
|
| 114 |
standardOptions.append("title='");
|
|
| 115 |
standardOptions.append(oc.getURI()); |
|
| 116 |
standardOptions.append("' ");
|
|
| 117 |
standardOptions.append("value='");
|
|
| 118 |
standardOptions.append(oc.getURI()); |
|
| 119 |
standardOptions.append("'");
|
|
| 120 |
standardOptions.append(">");
|
|
| 121 |
standardOptions.append(oc.getName()); |
|
| 122 |
standardOptions.append("</option>");
|
|
| 123 |
} |
|
| 124 |
// Protocol TODO: filtering |
|
| 125 |
StringBuffer protocolOptions = new StringBuffer(); |
|
| 126 |
List<OntologyClass> protocols = SMS.getInstance().getAnnotationManager().getActiveProtocols(); |
|
| 127 |
for (OntologyClass oc: protocols) {
|
|
| 128 |
protocolOptions.append("<option ");
|
|
| 129 |
protocolOptions.append("title='");
|
|
| 130 |
protocolOptions.append(oc.getURI()); |
|
| 131 |
protocolOptions.append("' ");
|
|
| 132 |
protocolOptions.append("value='");
|
|
| 133 |
protocolOptions.append(oc.getURI()); |
|
| 134 |
protocolOptions.append("'");
|
|
| 135 |
protocolOptions.append(">");
|
|
| 136 |
protocolOptions.append(oc.getName()); |
|
| 137 |
protocolOptions.append("</option>");
|
|
| 138 |
} |
|
| 139 |
// Measurement TODO: filtering |
|
| 140 |
StringBuffer measurementOptions = new StringBuffer(); |
|
| 141 |
List<OntologyClass> measurements = SMS.getInstance().getAnnotationManager().getActiveMeasurements(); |
|
| 142 |
for (OntologyClass oc: measurements) {
|
|
| 143 |
measurementOptions.append("<option ");
|
|
| 144 |
measurementOptions.append("title='");
|
|
| 145 |
measurementOptions.append(oc.getURI()); |
|
| 146 |
measurementOptions.append("' ");
|
|
| 147 |
measurementOptions.append("value='");
|
|
| 148 |
measurementOptions.append(oc.getURI()); |
|
| 149 |
measurementOptions.append("'");
|
|
| 150 |
measurementOptions.append(">");
|
|
| 151 |
measurementOptions.append(oc.getName()); |
|
| 152 |
measurementOptions.append("</option>");
|
|
| 153 |
} |
|
| 154 |
%> |
|
| 155 |
|
|
| 156 | 28 |
<%@ include file="../../common/common-settings.jsp"%> |
| 157 | 29 |
<%@ include file="../../common/configure-check.jsp"%> |
| 158 | 30 |
|
| ... | ... | |
| 176 | 48 |
<script language="javascript" type="text/javascript" src="<%=STYLE_SKINS_URL%>/semtools/semtools.js"></script> |
| 177 | 49 |
<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/branding.js"></script> |
| 178 | 50 |
|
| 51 |
<script language="Javascript" type="text/JavaScript"> |
|
| 52 |
function populateActiveDomain(divId, class) {
|
|
| 53 |
var entity = $("#activeEntities").val() ? $("#activeEntities").val() : "";
|
|
| 54 |
var characteristic = $("#activeCharacteristics").val() ? $("#activeCharacteristics").val() : "";
|
|
| 55 |
var protocol = $("#activeProtocols").val() ? $("#activeProtocols").val() : "";
|
|
| 56 |
var measurement = $("#activeMeasurements").val() ? $("#activeMeasurements").val() : "";
|
|
| 57 |
|
|
| 58 |
var originalValue = $("#" + divId).val();
|
|
| 59 |
$("#" + divId).load(
|
|
| 60 |
"http://fred.msi.ucsb.edu:8080/knb/metacat", |
|
| 61 |
{
|
|
| 62 |
'action': "getactivedomain", |
|
| 63 |
'class': class, |
|
| 64 |
'entity': entity, |
|
| 65 |
'characteristic': characteristic, |
|
| 66 |
'protocol': protocol, |
|
| 67 |
'measurement': measurement |
|
| 68 |
}, |
|
| 69 |
function(response, status, xhr) {
|
|
| 70 |
if (status == "error") {
|
|
| 71 |
var msg = "Sorry but there was an error: "; |
|
| 72 |
$("#error").html(msg + xhr.status + " " + xhr.statusText);
|
|
| 73 |
} |
|
| 74 |
// set the original selected value |
|
| 75 |
$("#" + divId).val(originalValue);
|
|
| 76 |
}); |
|
| 77 |
} |
|
| 78 |
function initialize(source) {
|
|
| 79 |
if (source) {
|
|
| 80 |
source = source.id; |
|
| 81 |
} |
|
| 82 |
if (!source) {
|
|
| 83 |
source = ""; |
|
| 84 |
} |
|
| 85 |
if (source != 'activeEntities') {
|
|
| 86 |
populateActiveDomain('activeEntities', 'org.ecoinformatics.sms.annotation.Entity');
|
|
| 87 |
} |
|
| 88 |
if (source != 'activeCharacteristics') {
|
|
| 89 |
var v = $('#activeCharacteristics').val();
|
|
| 90 |
populateActiveDomain('activeCharacteristics', 'org.ecoinformatics.sms.annotation.Characteristic');
|
|
| 91 |
$('#activeCharacteristics').val(v);
|
|
| 92 |
} |
|
| 93 |
if (source != 'activeProtocols') {
|
|
| 94 |
var v = $('#activeProtocols').val();
|
|
| 95 |
populateActiveDomain('activeProtocols', 'org.ecoinformatics.sms.annotation.Protocol');
|
|
| 96 |
$('#activeProtocols').val(v);
|
|
| 97 |
} |
|
| 98 |
if (source != 'activeMeasurements') {
|
|
| 99 |
var v = $('#activeMeasurements').val();
|
|
| 100 |
populateActiveDomain('activeMeasurements', 'org.ecoinformatics.sms.annotation.Measurement');
|
|
| 101 |
$('#activeMeasurements').val(v);
|
|
| 102 |
} |
|
| 103 |
} |
|
| 104 |
</script> |
|
| 105 |
|
|
| 179 | 106 |
</head> |
| 180 |
<body> |
|
| 107 |
<body onload="initialize()">
|
|
| 181 | 108 |
<script language="javascript"> |
| 182 | 109 |
insertTemplateOpening("<%=CONTEXT_URL%>");
|
| 183 | 110 |
</script> |
| ... | ... | |
| 186 | 113 |
|
| 187 | 114 |
<h2>Annotation-based search</h2> |
| 188 | 115 |
|
| 116 |
<div id="error"> |
|
| 117 |
<!-- error messages here --> |
|
| 118 |
</div> |
|
| 119 |
|
|
| 189 | 120 |
<form method="POST" action="<%=SERVLET_URL%>" target="_top" id="searchForm" name="searchForm" onSubmit="return checkSearch(this)"> |
| 190 | 121 |
<input name="query" type="hidden" /> |
| 191 | 122 |
<input name="qformat" value="semtools" type="hidden" /> |
| ... | ... | |
| 218 | 149 |
</tr> |
| 219 | 150 |
<tr> |
| 220 | 151 |
<td> |
| 221 |
<select name="dynamicValue" id="dynamicValue" multiple="multiple" size="5" style="width: 100%">
|
|
| 222 |
<%=measurementOptions %>
|
|
| 152 |
<select name="activeMeasurements" id="activeMeasurements" multiple="multiple" size="5" style="width: 100%" onchange="initialize(this)">
|
|
| 153 |
<option>loading...</option>
|
|
| 223 | 154 |
</select> |
| 224 |
<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement"/>
|
|
| 155 |
<input type="hidden" name="activeMeasurementsClass" id="activeMeasurementsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement"/>
|
|
| 225 | 156 |
</td> |
| 226 | 157 |
</tr> |
| 227 | 158 |
<tr> |
| ... | ... | |
| 247 | 178 |
<tr> |
| 248 | 179 |
<td> |
| 249 | 180 |
(a) |
| 250 |
<select name="dynamicValue" id="dynamicValue" multiple="multiple" size="5" style="width: 216px">
|
|
| 251 |
<%=entityOptions %>
|
|
| 181 |
<select name="activeEntities" id="activeEntities" multiple="multiple" size="5" style="width: 216px" onchange="initialize(this)">
|
|
| 182 |
<option>loading...</option>
|
|
| 252 | 183 |
</select> |
| 253 |
<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity"/>
|
|
| 184 |
<input type="hidden" name="activeEntitiesClass" id="activeEntitiesClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity"/>
|
|
| 254 | 185 |
</td> |
| 255 | 186 |
</tr> |
| 256 | 187 |
<tr> |
| ... | ... | |
| 274 | 205 |
</tr> |
| 275 | 206 |
<tr> |
| 276 | 207 |
<td> |
| 277 |
<select name="dynamicValue" id="dynamicValue" multiple="multiple" size="5" style="width: 216px">
|
|
| 278 |
<%=characteristicOptions %>
|
|
| 208 |
<select name="activeCharacteristics" id="activeCharacteristics" multiple="multiple" size="5" style="width: 216px" onchange="initialize(this)">
|
|
| 209 |
<option>loading...</option>
|
|
| 279 | 210 |
</select> |
| 280 |
<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic"/>
|
|
| 211 |
<input type="hidden" name="activeCharacteristicsClass" id="activeCharacteristicsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic"/>
|
|
| 281 | 212 |
</td> |
| 282 | 213 |
</tr> |
| 283 | 214 |
<tr> |
| ... | ... | |
| 301 | 232 |
</tr> |
| 302 | 233 |
<tr> |
| 303 | 234 |
<td> |
| 304 |
<select name="dynamicValue" id="dynamicValue" multiple="multiple" size="5" style="width: 216px">
|
|
| 305 |
<%=standardOptions %>
|
|
| 235 |
<select name="activeStandards" id="activeStandards" multiple="multiple" size="5" style="width: 216px" onchange="initialize(this)">
|
|
| 236 |
<option>loading...</option>
|
|
| 306 | 237 |
</select> |
| 307 |
<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard"/>
|
|
| 238 |
<input type="hidden" name="activeStandardsClass" id="activeStandardsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard"/>
|
|
| 308 | 239 |
</td> |
| 309 | 240 |
</tr> |
| 310 | 241 |
<tr> |
| ... | ... | |
| 328 | 259 |
</tr> |
| 329 | 260 |
<tr> |
| 330 | 261 |
<td> |
| 331 |
<select name="dynamicValue" id="dynamicValue" multiple="multiple" size="5" style="width: 216px">
|
|
| 332 |
<%=protocolOptions %>
|
|
| 262 |
<select name="activeProtocols" id="activeProtocols" multiple="multiple" size="5" style="width: 216px" onchange="initialize(this)">
|
|
| 263 |
<option>loading...</option>
|
|
| 333 | 264 |
</select> |
| 334 |
<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol"/>
|
|
| 265 |
<input type="hidden" name="activeProtocolsClass" id="activeProtocolsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol"/>
|
|
| 335 | 266 |
</td> |
| 336 | 267 |
</tr> |
| 337 | 268 |
<tr> |
| ... | ... | |
| 350 | 281 |
<td colspan="3">From same Observation? <input type="checkbox" name="strict"/></td> |
| 351 | 282 |
</tr> |
| 352 | 283 |
<tr> |
| 353 |
<td colspan="3"><input type="submit" value="Search"/></td> |
|
| 284 |
<td colspan="3"> |
|
| 285 |
<input type="submit" value="Search"/> |
|
| 286 |
<input type="reset" value="Clear" onclick="$('#searchForm').get(0).reset(); initialize()"/>
|
|
| 287 |
</td> |
|
| 354 | 288 |
</tr> |
| 355 | 289 |
</table> |
| 356 | 290 |
<!-- |
Also available in: Unified diff
use jQuery to build active domain selections