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Revision 6721

Added by ben leinfelder over 12 years ago

generating ORE maps and creating/updating system metadata now. There are some Permission conversion issues to be worked out yet

View differences:

GenerateSystemMetadata.java
41 41 
import org.dataone.service.types.v1.SystemMetadata;
42 42 

  		




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import edu.ucsb.nceas.metacat.AccessionNumberException;


  		




  
  44
  
    
import edu.ucsb.nceas.metacat.DBUtil;


  		




  
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import edu.ucsb.nceas.metacat.DocumentImpl;


  		




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import edu.ucsb.nceas.metacat.IdentifierManager;


  		




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import edu.ucsb.nceas.metacat.McdbDocNotFoundException;


  		




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import edu.ucsb.nceas.metacat.admin.AdminException;


  		




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import edu.ucsb.nceas.metacat.dataone.SystemMetadataFactory;


  		




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import edu.ucsb.nceas.metacat.properties.PropertyService;


  		




  
  51
  
    
import edu.ucsb.nceas.metacat.util.DocumentUtil;


  		




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import edu.ucsb.nceas.utilities.PropertyNotFoundException;


  		




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import edu.ucsb.nceas.utilities.SortedProperties;


  		




  51
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  ......




  96
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    NotFound, NotImplemented, InvalidRequest, NoSuchAlgorithmException, AccessionNumberException, SQLException 


  		




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    {


  		




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        //get the list of ids with no SM


  		




  99
  
  
    
        List<String> idList = IdentifierManager.getInstance().getLocalIdsWithNoSystemMetadata(true);


  		




  
  102
  
    
        //List<String> idList = IdentifierManager.getInstance().getLocalIdsWithNoSystemMetadata(true);


  		




  
  103
  
    
        List<String> idList = DBUtil.getAllDocidsByType(null, true);


  		




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        for (String localId : idList) { 


  		




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            //for each id, add a system metadata doc


  		




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        	try {


  		




  
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        		log.debug("generating missing system metadata for " + localId);


  		




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        		generateMissingSystemMetadata(localId, includeOre);


  		




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        	} catch (Exception e) {


  		




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				log.error("Error generating system metadata for: " + localId, e);


  		




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			}


  		




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        }


  		




  108
  
  
    
        log.info("generateMissingSystemMetadata(token)");


  		




  
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        log.info("done generating missing system metadata");


  		




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    }


  		




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    /**


  		




  ......




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        	throw sf;


  		




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        }


  		




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        //insert the systemmetadata object or just update it


  		




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        boolean exists = IdentifierManager.getInstance().identifierExists(sm.getIdentifier().getValue());


  		




  
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        //insert the systemmetadata object or just update it as needed


  		




  
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        boolean exists = IdentifierManager.getInstance().systemMetadataExists(sm.getIdentifier().getValue());


  		




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        if (!exists) {


  		




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        	IdentifierManager.getInstance().createSystemMetadata(sm);


  		




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        }


  		












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